Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 782 results

3LZI
DownloadVisualize
BU of 3lzi by Molmil
RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanine
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M, Beckman, J, Blaha, G, Wang, J, Konigsberg, W.H.
Deposit date:2010-03-01
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Substitution of Ala for Tyr567 in RB69 DNA polymerase allows dAMP to be inserted opposite 7,8-dihydro-8-oxoguanine .
Biochemistry, 49, 2010
7WC2
DownloadVisualize
BU of 7wc2 by Molmil
Cryo-EM structure of alphavirus, Getah virus
Descriptor: Spike glycoprotein E1, Spike glycoprotein E2, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Wang, M, Sun, Z.Z, Wang, J.F.
Deposit date:2021-12-18
Release date:2022-11-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Implications for the pathogenicity and antigenicity of alpha viruses revealed by a 3.5 angstrom Cryo-EM structure of Getah virus
To Be Published
7WCO
DownloadVisualize
BU of 7wco by Molmil
Cryo-EM structure of alphavirus, Getah virus
Descriptor: Capsid protein, Spike glycoprotein E1, Spike glycoprotein E2
Authors:Wang, M, Sun, Z.Z, Wang, J.F.
Deposit date:2021-12-20
Release date:2022-11-02
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Implications for the pathogenicity and antigenicity of alpha viruses revealed by a 3.5 angstrom Cryo-EM structure of Getah virus
To Be Published
8Z4E
DownloadVisualize
BU of 8z4e by Molmil
Structure of human 18_14D scFv and 1G01 scFv in complex with influenza virus neuraminidase from A/Yunan/DQ001/2016 (H5N6)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Heavy chain of 18_14D scFv, ...
Authors:Wang, M, Peng, Q, Gao, Y, Shi, Y.
Deposit date:2024-04-17
Release date:2025-01-22
Method:ELECTRON MICROSCOPY (3 Å)
Cite:A human monoclonal antibody targeting the monomeric N6 neuraminidase confers protection against avian H5N6 influenza virus infection.
Nat Commun, 15, 2024
7W9S
DownloadVisualize
BU of 7w9s by Molmil
Crystal structure of the enterovirus 71 polymerase elongation complex (C1S3 form)
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, Genome polyprotein, MAGNESIUM ION, ...
Authors:Wang, M, Gong, P.
Deposit date:2021-12-10
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Crystal structure of a pre-chemistry viral RNA-dependent RNA polymerase suggests participation of two basic residues in catalysis.
Nucleic Acids Res., 50, 2022
4X1B
DownloadVisualize
BU of 4x1b by Molmil
Human serum transferrin with ferric ion bound at the C-lobe only
Descriptor: FE (III) ION, GLYCEROL, MALONATE ION, ...
Authors:Wang, M, Zhang, H, Sun, H.
Deposit date:2014-11-24
Release date:2015-04-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:"Anion clamp" allows flexible protein to impose coordination geometry on metal ions
Chem.Commun.(Camb.), 51, 2015
4X1D
DownloadVisualize
BU of 4x1d by Molmil
Ytterbium-bound human serum transferrin
Descriptor: GLYCEROL, MALONATE ION, Serotransferrin, ...
Authors:Wang, M, Zhang, H, Sun, H.
Deposit date:2014-11-24
Release date:2015-04-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:"Anion clamp" allows flexible protein to impose coordination geometry on metal ions
Chem.Commun.(Camb.), 51, 2015
3LZJ
DownloadVisualize
BU of 3lzj by Molmil
RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanine
Descriptor: CALCIUM ION, CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M, Beckman, J, Blaha, G, Wang, J, Konigsberg, W.H.
Deposit date:2010-03-01
Release date:2010-05-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Substitution of Ala for Tyr567 in RB69 DNA polymerase allows dAMP to be inserted opposite 7,8-dihydro-8-oxoguanine .
Biochemistry, 49, 2010
9Y9W
DownloadVisualize
BU of 9y9w by Molmil
Vibrio cholerae protein FrhA peptid-binding domain and adjacent split domain (S1127-F1439) in complex with peptide AGWTD X-ray crystallography structure
Descriptor: 1,2-ETHANEDIOL, Ala-Gly-Trp-Thr-Asp (AGWTD), CALCIUM ION, ...
Authors:Wang, M, Guo, S, Kinrade, B, Davies, P.
Deposit date:2025-09-15
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Peptide-based ligand antagonists block a Vibrio cholerae adhesin.
Febs Lett., 2025
9YBQ
DownloadVisualize
BU of 9ybq by Molmil
Vibrio cholerae protein FrhA peptid-binding domain and adjacent split domain (S1127-F1439) in complex with peptide AGYTD X-ray crystallography structure
Descriptor: ALA-GLY-TYR-THR-ASP, CALCIUM ION, Cadherin domain protein
Authors:Wang, M, Guo, S, Kinrade, B, Davies, P.
Deposit date:2025-09-17
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Peptide-based ligand antagonists block a Vibrio cholerae adhesin.
Febs Lett., 2025
2F48
DownloadVisualize
BU of 2f48 by Molmil
Crystal Structure of A Novel Fructose 1,6-Bisphosphate and AlF3 containing Pyrophosphate-dependent Phosphofructo-1-kinase Complex from Borrelia burgdorferi
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, ALUMINUM FLUORIDE, diphosphate--fructose-6-phosphate 1-phosphotransferase
Authors:Wang, M.
Deposit date:2005-11-22
Release date:2006-11-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal Structure of A Novel Fructose 1,6-Bisphosphate and AlF3 containing Pyrophosphate-dependent Phosphofructo-1-kinase Complex from Borrelia burgdorferi
TO BE PUBLISHED
8R1E
DownloadVisualize
BU of 8r1e by Molmil
crystal structure of acyl-CoA dehydrogenase FadE2 mutant (PA0508 M130G E296A Q303A) from Pseudomonas aeruginosa
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Probable acyl-CoA dehydrogenase, ...
Authors:Wang, M, Brear, P, Welch, M.
Deposit date:2023-11-01
Release date:2025-02-19
Last modified:2025-05-21
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Pseudomonas aeruginosa acyl-CoA dehydrogenases and structure-guided inversion of their substrate specificity.
Nat Commun, 16, 2025
2FXY
DownloadVisualize
BU of 2fxy by Molmil
Solution structure of 55-72 segment of staphylococcal nuclease
Descriptor: 18-mer peptide from Thermonuclease
Authors:Wang, M, Shan, L, Wang, J.F.
Deposit date:2006-02-07
Release date:2006-12-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Two peptide fragments G55-I72 and K97-A109 from staphylococcal nuclease exhibit different behaviors in conformational preferences for helix formation
Biopolymers, 83, 2006
2FXZ
DownloadVisualize
BU of 2fxz by Molmil
Solution structure of 97-109 segment of staphylococcal nuclease
Descriptor: 13-mer peptide from Thermonuclease
Authors:Wang, M, Shan, L, Wang, J.F.
Deposit date:2006-02-07
Release date:2006-12-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Two peptide fragments G55-I72 and K97-A109 from staphylococcal nuclease exhibit different behaviors in conformational preferences for helix formation
Biopolymers, 83, 2006
3NGI
DownloadVisualize
BU of 3ngi by Molmil
RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dG
Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ...
Authors:Wang, M, Wang, J, Konigsberg, W.H.
Deposit date:2010-06-11
Release date:2011-01-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.886 Å)
Cite:Variation in Mutation Rates Caused by RB69pol Fidelity Mutants Can Be Rationalized on the Basis of Their Kinetic Behavior and Crystal Structures.
J.Mol.Biol., 406, 2011
3NDK
DownloadVisualize
BU of 3ndk by Molmil
RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dG
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M, Wang, J, Konigsberg, W.H.
Deposit date:2010-06-07
Release date:2011-01-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Variation in Mutation Rates Caused by RB69pol Fidelity Mutants Can Be Rationalized on the Basis of Their Kinetic Behavior and Crystal Structures.
J.Mol.Biol., 406, 2011
3NHG
DownloadVisualize
BU of 3nhg by Molmil
RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dG
Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ...
Authors:Wang, M, Wang, J, Konigsberg, W.H.
Deposit date:2010-06-14
Release date:2011-01-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Variation in Mutation Rates Caused by RB69pol Fidelity Mutants Can Be Rationalized on the Basis of Their Kinetic Behavior and Crystal Structures.
J.Mol.Biol., 406, 2011
3NCI
DownloadVisualize
BU of 3nci by Molmil
RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolution
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M, Blaha, G, Steitz, T.A, Konigsberg, W.H, Wang, J.
Deposit date:2010-06-04
Release date:2011-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Insights into base selectivity from the 1.8 A resolution structure of an RB69 DNA polymerase ternary complex.
Biochemistry, 50, 2011
8PNG
DownloadVisualize
BU of 8png by Molmil
Crystal structure of the apo acyl-CoA dehydrogenase FadE2 (PA0508) from Pseudomonas aeruginosa
Descriptor: DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Wang, M, Brear, P, Welch, M.
Deposit date:2023-06-30
Release date:2025-01-15
Last modified:2025-05-21
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Pseudomonas aeruginosa acyl-CoA dehydrogenases and structure-guided inversion of their substrate specificity.
Nat Commun, 16, 2025
8PNS
DownloadVisualize
BU of 8pns by Molmil
Crystal structure of the acyl-CoA dehydrogenase PA0506 (FadE1) from Pseudomonas aeruginosa
Descriptor: Acyl-CoA dehydrogenase, DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Wang, M, Brear, P, Welch, M.
Deposit date:2023-06-30
Release date:2025-01-15
Last modified:2025-05-21
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Pseudomonas aeruginosa acyl-CoA dehydrogenases and structure-guided inversion of their substrate specificity.
Nat Commun, 16, 2025
3NE6
DownloadVisualize
BU of 3ne6 by Molmil
RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dG
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M, Wang, J, Konigsberg, W.H.
Deposit date:2010-06-08
Release date:2011-01-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Variation in Mutation Rates Caused by RB69pol Fidelity Mutants Can Be Rationalized on the Basis of Their Kinetic Behavior and Crystal Structures.
J.Mol.Biol., 406, 2011
3NAE
DownloadVisualize
BU of 3nae by Molmil
RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Guanidinohydantoin
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M, Beckman, J, Blaha, G, Wang, J, Konigsberg, W.H.
Deposit date:2010-06-01
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Substitution of Ala for Tyr567 in RB69 DNA Polymerase Allows dAMP and dGMP To Be Inserted opposite Guanidinohydantoin .
Biochemistry, 49, 2010
8PU5
DownloadVisualize
BU of 8pu5 by Molmil
Crystal structure of the Acyl-CoA dehydrogenase FadE1(PA0506) E441A from Pseudomonas aeruginosa complexed with C16CoA
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, NITRATE ION, ...
Authors:Wang, M, Brear, P, Welch, M.
Deposit date:2023-07-16
Release date:2025-02-12
Last modified:2025-05-21
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Pseudomonas aeruginosa acyl-CoA dehydrogenases and structure-guided inversion of their substrate specificity.
Nat Commun, 16, 2025
9VUZ
DownloadVisualize
BU of 9vuz by Molmil
an engineered light chain single-domain antibody targeting at mouse CD16
Descriptor: VHHL6
Authors:Wang, M.K, Xu, Q.Y, Yang, Z.L, Ying, T.L, Wu, Y.L.
Deposit date:2025-07-14
Release date:2025-11-05
Last modified:2025-11-26
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Engineering a novel light-chain single-domain antibody to enable IgG-format bispecific antibody design.
Antib Ther, 8, 2025
8PI2
DownloadVisualize
BU of 8pi2 by Molmil
Native alpha-1-antitrypsin at 1.5 Angstrom (Cys232Ser)
Descriptor: 1,2-ETHANEDIOL, Alpha-1-antitrypsin, DIMETHYL SULFOXIDE, ...
Authors:Wang, M, Irving, J.A.
Deposit date:2023-06-20
Release date:2023-07-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural determinants of instability in alpha-1-antitrypsin
To Be Published

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon