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PDB: 663 results

4Y7N
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BU of 4y7n by Molmil
The Structure Insight into 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation.
Descriptor: DNA (29-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Wang, L, Chong, J, Wang, D.
Deposit date:2015-02-15
Release date:2015-07-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex.
Nature, 523, 2015
4Y52
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BU of 4y52 by Molmil
Crystal structure of 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation.
Descriptor: DNA (29-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Wang, L, Chong, J, Wang, D.
Deposit date:2015-02-11
Release date:2015-07-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex.
Nature, 523, 2015
1ZOK
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BU of 1zok by Molmil
PDZ1 Domain Of Synapse Associated Protein 97
Descriptor: Presynaptic protein SAP97
Authors:Wang, L, Piserchio, A, Mierke, D.F.
Deposit date:2005-05-13
Release date:2005-06-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Characterization of the Intermolecular Interactions of Synapse-associated Protein-97 with the NR2B Subunit of N-Methyl-D-aspartate Receptors.
J.Biol.Chem., 280, 2005
4QVD
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BU of 4qvd by Molmil
E.coli Hfq in complex with RNA Ads
Descriptor: RNA (5'-R(*AP*AP*CP*UP*AP*AP*A)-3'), RNA-binding protein Hfq
Authors:Wang, L.J, Wang, W.W, Li, F.D, Wu, J.H, Gong, Q.G, Shi, Y.Y.
Deposit date:2014-07-14
Release date:2015-05-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.972 Å)
Cite:Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq
Nucleic Acids Res., 43, 2015
4U7P
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BU of 4u7p by Molmil
Crystal structure of DNMT3A-DNMT3L complex
Descriptor: DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Wang, L, Guo, X, Li, J, Xiao, J, Yin, X, He, S, Wang, J, Xu, Y.
Deposit date:2014-07-31
Release date:2014-11-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.821 Å)
Cite:Structural insight into autoinhibition and histone H3-induced activation of DNMT3A
Nature, 517, 2015
4YPR
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BU of 4ypr by Molmil
Crystal Structure of D144N MutY bound to its anti-substrate
Descriptor: A/G-specific adenine glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(*T*GP*TP*CP*CP*AP*CP*GP*TP*CP*T)-3'), ...
Authors:Wang, L, Lee, S, Verdine, G.L.
Deposit date:2015-03-13
Release date:2015-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase.
J.Biol.Chem., 290, 2015
4YOQ
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BU of 4yoq by Molmil
Crystal Structure of MutY bound to its anti-substrate
Descriptor: A/G-specific adenine glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(*T*GP*TP*CP*CP*AP*CP*GP*TP*CP*T)-3'), ...
Authors:Wang, L, Lee, S, Verdine, G.L.
Deposit date:2015-03-11
Release date:2015-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase.
J.Biol.Chem., 290, 2015
4YPH
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BU of 4yph by Molmil
Crystal Structure of MutY bound to its anti-substrate with the disulfide cross-linker reduced
Descriptor: A/G-specific adenine glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(TP*GP*TP*CP*CP*AP*CP*GP*TP*CP*T)-3'), ...
Authors:Wang, L, Lee, S, Verdine, G.L.
Deposit date:2015-03-12
Release date:2015-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase.
J.Biol.Chem., 290, 2015
4R77
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BU of 4r77 by Molmil
Crystal structure of choline kinase LicA from Streptococcus pneumoniae
Descriptor: Choline kinase
Authors:Wang, L, Jiang, Y.L, Zhou, C.Z, Chen, Y.X.
Deposit date:2014-08-27
Release date:2015-08-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural and enzymatic characterization of the choline kinase LicA from Streptococcus pneumoniae
Plos One, 10, 2015
4X67
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BU of 4x67 by Molmil
Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesions.
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Wang, L, Chong, J, Wang, D.
Deposit date:2014-12-07
Release date:2015-02-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions.
Proc.Natl.Acad.Sci.USA, 112, 2015
4X6A
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BU of 4x6a by Molmil
Crystal structure of yeast RNA polymerase II encountering oxidative Cyclopurine DNA lesions
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Wang, L, Chong, J, Wang, D.
Deposit date:2014-12-07
Release date:2015-02-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.96 Å)
Cite:Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions.
Proc.Natl.Acad.Sci.USA, 112, 2015
6FXD
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BU of 6fxd by Molmil
Crystal structure of MupZ from Pseudomonas fluorescens
Descriptor: MupZ
Authors:Wang, L, Parnell, A, Williams, C, Bakar, N.A, van der Kamp, M.W, Simpson, T.J, Race, P.R, Crump, M.P, Willis, C.L.
Deposit date:2018-03-08
Release date:2019-03-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Rieske oxygenase/epoxide hydrolase-catalysed reaction cascade creates oxygen heterocycles in mupirocin biosynthesis
Nat Catal, 2018
8SBD
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BU of 8sbd by Molmil
Cryo-EM structure of insulin amyloid-like fibril that is composed of two antiparallel protofilaments
Descriptor: Insulin A chain, Insulin B chain
Authors:Wang, L.W, Hall, C, Uchikawa, E, Chen, D.L, Choi, E, Zhang, X.W, Bai, X.C.
Deposit date:2023-04-03
Release date:2023-08-30
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis of insulin fibrillation.
Sci Adv, 9, 2023
9J0H
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BU of 9j0h by Molmil
The crystal structure of styrene monooxygenase StyA from Streptomyces vilmorinianum
Descriptor: styrene monooxygenase/indole monooxygenase family protein
Authors:Wang, L, Zhou, J.
Deposit date:2024-08-02
Release date:2025-03-19
Last modified:2025-05-14
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Structural and Mechanistic Insight into the Enantioselectivity of (R)-Selective Styrene Monooxygenases: A Tug-of-War between Proximal and Distal Residues.
Angew.Chem.Int.Ed.Engl., 64, 2025
9IS7
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BU of 9is7 by Molmil
Paracandidimonas lactea CP group II intron 2S state
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (153-MER), ...
Authors:Wang, L, Xie, J.H, Zhang, C, Zou, J, Huang, Z, Shang, S, Chen, X, Yang, Y, Liu, J, Dong, H, Huang, D, Su, Z.
Deposit date:2024-07-17
Release date:2025-02-12
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Structural basis of circularly permuted group II intron self-splicing.
Nat.Struct.Mol.Biol., 2025
9J6Y
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BU of 9j6y by Molmil
Lactobacillus salivarius ROOL RNA hexamer
Descriptor: MAGNESIUM ION, RNA (550-MER)
Authors:Wang, L, Xie, J.H, Shang, S.T, Su, Z.M.
Deposit date:2024-08-17
Release date:2025-03-19
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Cryo-EM reveals mechanisms of natural RNA multivalency.
Science, 388, 2025
3Q4A
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BU of 3q4a by Molmil
Crystal structure of the TPR domain of CHIP complexed with phosphorylated Smad1 peptide
Descriptor: STIP1 homology and U box-containing protein 1, Smad1 peptide
Authors:Wang, L, Chen, L, Wu, J.W.
Deposit date:2010-12-23
Release date:2011-03-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.542 Å)
Cite:Molecular Mechanism of the Negative Regulation of Smad1/5 Protein by Carboxyl Terminus of Hsc70-interacting Protein (CHIP).
J.Biol.Chem., 286, 2011
9J3T
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BU of 9j3t by Molmil
Enterococcus faecalis ROOL RNA octamer
Descriptor: RNA (580-MER)
Authors:Wang, L, Xie, J.H, Shang, S.T, Su, Z.M.
Deposit date:2024-08-08
Release date:2025-03-19
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM reveals mechanisms of natural RNA multivalency.
Science, 388, 2025
9J3R
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BU of 9j3r by Molmil
Enterococcus faecalis ROOL RNA tetramer
Descriptor: RNA (580-MER)
Authors:Wang, L, Xie, J.H, Shang, S.T, Su, Z.M.
Deposit date:2024-08-08
Release date:2025-03-19
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (4.72 Å)
Cite:Cryo-EM reveals mechanisms of natural RNA multivalency.
Science, 388, 2025
9ISV
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BU of 9isv by Molmil
Enterococcus faecalis ROOL RNA monomer
Descriptor: RNA (580-MER)
Authors:Wang, L, Xie, J.H, Su, Z.M.
Deposit date:2024-07-18
Release date:2025-03-19
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Cryo-EM reveals mechanisms of natural RNA multivalency.
Science, 388, 2025
3Q47
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BU of 3q47 by Molmil
Crystal structure of TPR domain of CHIP complexed with pseudophosphorylated Smad1 peptide
Descriptor: STIP1 homology and U box-containing protein 1, Smad1 peptide
Authors:Wang, L, Chen, L, Wu, J.W.
Deposit date:2010-12-23
Release date:2011-03-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.705 Å)
Cite:Molecular Mechanism of the Negative Regulation of Smad1/5 Protein by Carboxyl Terminus of Hsc70-interacting Protein (CHIP).
J.Biol.Chem., 286, 2011
3Q49
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BU of 3q49 by Molmil
Crystal structure of the TPR domain of CHIP complexed with Hsp70-C peptide
Descriptor: Hsp70-C peptide, STIP1 homology and U box-containing protein 1
Authors:Wang, L, Chen, L, Wu, J.W.
Deposit date:2010-12-23
Release date:2011-03-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.543 Å)
Cite:Molecular Mechanism of the Negative Regulation of Smad1/5 Protein by Carboxyl Terminus of Hsc70-interacting Protein (CHIP).
J.Biol.Chem., 286, 2011
7CWS
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BU of 7cws by Molmil
SARS-CoV-2 Spike Proteins Trimer in Complex with FC05 and H014 Fabs Cocktail
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy Chain of FC05 Fab, ...
Authors:Wang, L, Wang, X.
Deposit date:2020-08-31
Release date:2020-12-16
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure-based development of human antibody cocktails against SARS-CoV-2.
Cell Res., 31, 2021
8XTR
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BU of 8xtr by Molmil
Comamonas testosteroni KF-1 circularly permuted group II intron 2S state
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (219-MER), ...
Authors:Wang, L, Xie, J.H, Zhang, C, Zou, J, Huang, Z, Shang, S, Chen, X, Yang, Y, Liu, J, Dong, H, Huang, D, Su, Z.
Deposit date:2024-01-11
Release date:2025-02-12
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Structural basis of circularly permuted group II intron self-splicing.
Nat.Struct.Mol.Biol., 2025
8XTP
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Comamonas testosteroni KF-1 circularly permuted group II intron Post-2S state
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (133-MER), ...
Authors:Wang, L, Xie, J.H, Zhang, C, Zou, J, Huang, Z.R, Shang, S.T, Chen, X.Y, Yang, Y, Liu, J, Dong, H.H, Huang, D.M, Su, Z.M.
Deposit date:2024-01-11
Release date:2025-02-12
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of circularly permuted group II intron self-splicing.
Nat.Struct.Mol.Biol., 2025

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PDB entries from 2025-06-11

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