Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1554 results

1J0Q
DownloadVisualize
BU of 1j0q by Molmil
Solution Structure of Oxidized Bovine Microsomal Cytochrome b5 mutant V61H
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, cytochrome b5
Authors:Wu, H, Huang, Z, Cao, C, Zhang, Q, Wang, Y.-H, Ma, J.-B, Xue, L.-L.
Deposit date:2002-11-20
Release date:2003-08-12
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The solution structure of the oxidized bovine microsomal cytochrome b5 mutant V61H
Biochem.Biophys.Res.Commun., 307, 2003
8FXT
DownloadVisualize
BU of 8fxt by Molmil
Escherichia coli periplasmic Glucose-Binding Protein glucose complex: Acrylodan conjugate attached at W183C
Descriptor: 1-[6-(dimethylamino)naphthalen-2-yl]propan-1-one, CALCIUM ION, D-galactose/methyl-galactoside binding periplasmic protein MglB, ...
Authors:Allert, M.J, Kumar, S, Wang, Y, Beese, L.S, Hellinga, H.W.
Deposit date:2023-01-25
Release date:2023-08-30
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Chromophore carbonyl twisting in fluorescent biosensors encodes direct readout of protein conformations with multicolor switching.
Commun Chem, 6, 2023
1TQH
DownloadVisualize
BU of 1tqh by Molmil
Covalent Reaction intermediate Revealed in Crystal Structure of the Geobacillus stearothermophilus Carboxylesterase Est30
Descriptor: Carboxylesterase precursor, PROPYL ACETATE, SULFATE ION
Authors:Liu, P, Wang, Y.F, Ewis, H.E, Abdelal, A.T, Lu, C.D, Harrison, R.W, Weber, I.T.
Deposit date:2004-06-17
Release date:2004-09-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Covalent reaction intermediate revealed in crystal structure of the Geobacillus stearothermophilus carboxylesterase Est30.
J.Mol.Biol., 342, 2004
6JDJ
DownloadVisualize
BU of 6jdj by Molmil
Crystal structure of AcrIIC2 dimer in complex with partial Nme1Cas9
Descriptor: AcrIIC2, CRISPR-associated endonuclease Cas9
Authors:Cheng, Z, Huang, X, Sun, W, Wang, Y.
Deposit date:2019-02-01
Release date:2019-05-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Inhibition of CRISPR-Cas9 ribonucleoprotein complex assembly by anti-CRISPR AcrIIC2.
Nat Commun, 10, 2019
4J1R
DownloadVisualize
BU of 4j1r by Molmil
Crystal Structure of GSK3b in complex with inhibitor 15R
Descriptor: (2R)-2-(1H-indol-3-ylmethyl)-1,4-dihydropyrido[2,3-b]pyrazin-3(2H)-one, Glycogen synthase kinase-3 beta, PHOSPHATE ION, ...
Authors:Zhan, C, Wang, Y, Wach, J, Sheehan, P, Zhong, C, Harris, R, Patskovsky, Y, Bishop, J, Haggarty, S, Ramek, A, Berry, K, O'Herin, C, Koehler, A.N, Hung, A.W, Young, D.W, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-02-01
Release date:2013-03-20
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:Fragment-based approach using diversity-oriented synthesis yields a GSK3b inhibitor
To be Published
3S56
DownloadVisualize
BU of 3s56 by Molmil
HIV-1 protease triple mutants V32I, I47V, V82I with antiviral drug saquinavir
Descriptor: (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide, ACETATE ION, Protease
Authors:Tie, Y.-F, Wang, Y.-F, Weber, I.T.
Deposit date:2011-05-20
Release date:2012-03-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Critical differences in HIV-1 and HIV-2 protease specificity for clinical inhibitors.
Protein Sci., 21, 2012
7CI2
DownloadVisualize
BU of 7ci2 by Molmil
Crystal structure of AcrVA2 in complex with partial MbCpf1
Descriptor: AcrVA2, MbCpf1
Authors:Chen, P, Cheng, Z, Wang, Y.
Deposit date:2020-07-07
Release date:2020-10-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Study on Anti-CRISPR Protein AcrVA2
Prog.Biochem.Biophys., 2021
3S53
DownloadVisualize
BU of 3s53 by Molmil
HIV-1 protease triple mutants V32I, I47V, V82I with antiviral drug darunavir in space group P212121
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, IODIDE ION, PHOSPHATE ION, ...
Authors:Tie, Y.-F, Wang, Y.-F, Weber, I.T.
Deposit date:2011-05-20
Release date:2012-03-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Critical differences in HIV-1 and HIV-2 protease specificity for clinical inhibitors.
Protein Sci., 21, 2012
7CE2
DownloadVisualize
BU of 7ce2 by Molmil
The Crystal structure of TeNT Hc complexed with neutralizing antibody
Descriptor: Tetanus toxin, neutralizing antibody heavy chain, neutralizing antibody light chain
Authors:Wang, X, Wang, Y, Wu, C, Yu, J, Liao, H.
Deposit date:2020-06-21
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural basis of tetanus toxin neutralization by native human monoclonal antibodies.
Cell Rep, 35, 2021
4J71
DownloadVisualize
BU of 4j71 by Molmil
Crystal Structure of GSK3b in complex with inhibitor 1R
Descriptor: (2R)-2-methyl-1,4-dihydropyrido[2,3-b]pyrazin-3(2H)-one, CHLORIDE ION, Glycogen synthase kinase-3 beta, ...
Authors:Zhan, C, Wang, Y, Wach, J, Sheehan, P, Zhong, C, Harris, R, Patskovsky, Y, Bishop, J, Haggarty, S, Ramek, A, Berry, K, O'Herin, C, Koehler, A.N, Hung, A.W, Young, D.W, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-02-12
Release date:2013-03-20
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Fragment-based approach using diversity-oriented synthesis yields a GSK3b inhibitor
To be Published
6D6V
DownloadVisualize
BU of 6d6v by Molmil
CryoEM structure of Tetrahymena telomerase with telomeric DNA at 4.8 Angstrom resolution
Descriptor: DNA (5'-D(P*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*G)-3'), RNA (159-MER), Telomerase associated protein p65, ...
Authors:Jiang, J, Wang, Y, Susac, L, Chan, H, Basu, R, Zhou, Z.H, Feigon, J.
Deposit date:2018-04-22
Release date:2018-05-30
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structure of Telomerase with Telomeric DNA.
Cell, 173, 2018
8JHW
DownloadVisualize
BU of 8jhw by Molmil
The first crystal structure of a H-2Kb-restricted decapeptide from Cryptosporidium parvum
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Fan, S, Wang, Y.
Deposit date:2023-05-25
Release date:2024-05-29
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:The first crystal structure of a H-2Kb-restricted decapeptide from Cryptosporidium parvum
To Be Published
8JHV
DownloadVisualize
BU of 8jhv by Molmil
The first crystal structure of a H-2Kb-restricted decapeptide from Cryptosporidium parvum
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-B alpha chain, ...
Authors:Fan, S, Wang, Y, Zhao, J.
Deposit date:2023-05-25
Release date:2024-05-29
Method:X-RAY DIFFRACTION (3.47 Å)
Cite:The first crystal structure of a H-2Kb-restricted decapeptide from Cryptosporidium parvum
To Be Published
1HS7
DownloadVisualize
BU of 1hs7 by Molmil
VAM3P N-TERMINAL DOMAIN SOLUTION STRUCTURE
Descriptor: SYNTAXIN VAM3
Authors:Dulubova, I, Yamaguchi, T, Wang, Y, Sudhof, T.C, Rizo, J.
Deposit date:2000-12-24
Release date:2001-03-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Vam3p structure reveals conserved and divergent properties of syntaxins.
Nat.Struct.Biol., 8, 2001
4ZIB
DownloadVisualize
BU of 4zib by Molmil
Crystal Structure of the C-terminal domain of PylRS mutant bound with 3-benzothienyl-l-alanine and ATP
Descriptor: 1,2-ETHANEDIOL, 3-(1-benzothiophen-3-yl)-L-alanine, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Nakamura, A, Guo, L.T, Wang, Y.S, Soll, D.
Deposit date:2015-04-28
Release date:2016-03-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.054 Å)
Cite:Probing the active site tryptophan of Staphylococcus aureus thioredoxin with an analog.
Nucleic Acids Res., 43, 2015
1I87
DownloadVisualize
BU of 1i87 by Molmil
SOLUTION STRUCTURE OF THE WATER-SOLUBLE FRAGMENT OF RAT HEPATIC APOCYTOCHROME B5
Descriptor: CYTOCHROME B5
Authors:Falzone, C.J, Wang, Y, Vu, B.C, Scott, N.L, Bhattacharya, S, Lecomte, J.T.
Deposit date:2001-03-12
Release date:2001-05-16
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural and dynamic perturbations induced by heme binding in cytochrome b5.
Biochemistry, 40, 2001
2FTU
DownloadVisualize
BU of 2ftu by Molmil
solution structure of domain 3 of RAP
Descriptor: Alpha-2-macroglobulin receptor-associated protein, domain 3
Authors:Lee, D, Walsh, J.D, Wang, Y.-X.
Deposit date:2006-01-24
Release date:2006-05-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:RAP uses a histidine switch to regulate its interaction with LRP in the ER and Golgi.
Mol.Cell, 22, 2006
3S54
DownloadVisualize
BU of 3s54 by Molmil
HIV-1 protease triple mutants V32I, I47V, V82I with antiviral drug darunavir in space group P21212
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, ACETATE ION, CHLORIDE ION, ...
Authors:Tie, Y.-F, Wang, Y.-F, Weber, I.T.
Deposit date:2011-05-20
Release date:2012-03-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Critical differences in HIV-1 and HIV-2 protease specificity for clinical inhibitors.
Protein Sci., 21, 2012
5ZEN
DownloadVisualize
BU of 5zen by Molmil
Crystal structure of human topoisomerase II beta in complex with DNA: a new quaternary conformation showing opening of the protein-linked DNA-gate
Descriptor: DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'), DNA (5'-D(P*AP*GP*CP*TP*CP*GP*GP*CP*T)-3'), DNA topoisomerase 2-beta, ...
Authors:Chen, S.F, Wang, Y.R, Chan, N.L.
Deposit date:2018-02-27
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural insights into the gating of DNA passage by the topoisomerase II DNA-gate.
Nat Commun, 9, 2018
7E35
DownloadVisualize
BU of 7e35 by Molmil
Crystal structure of the SARS-CoV-2 papain-like protease (PLPro) C112S mutant bound to compound S43
Descriptor: N-[(3-acetamidophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide, Non-structural protein 3, ZINC ION
Authors:Liu, J, Wang, Y, Xu, X, Pan, L.
Deposit date:2021-02-08
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Development of potent and selective inhibitors targeting the papain-like protease of SARS-CoV-2.
Cell Chem Biol, 28, 2021
7D4S
DownloadVisualize
BU of 7d4s by Molmil
apo-form cyclic trinucleotide synthase CdnD
Descriptor: Cyclic AMP-AMP-GMP synthase, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION
Authors:Yang, C.-S, Hou, M.-H, Tsai, C.-L, Wang, Y.-C, Ko, T.-P, Chen, Y.
Deposit date:2020-09-24
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal structure and functional implication of a bacterial cyclic AMP-AMP-GMP synthetase.
Nucleic Acids Res., 49, 2021
1I8C
DownloadVisualize
BU of 1i8c by Molmil
SOLUTION STRUCTURE OF THE WATER-SOLUBLE FRAGMENT OF RAT HEPATIC APOCYTOCHROME B5
Descriptor: CYTOCHROME B5
Authors:Falzone, C.J, Wang, Y, Vu, B.C, Scott, N.L, Bhattacharya, S, Lecomte, J.T.
Deposit date:2001-03-13
Release date:2001-05-16
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural and dynamic perturbations induced by heme binding in cytochrome b5.
Biochemistry, 40, 2001
7D4J
DownloadVisualize
BU of 7d4j by Molmil
ddATP complex of cyclic trinucleotide synthase CdnD
Descriptor: 2',3'-dideoxyadenosine triphosphate, Cyclic AMP-AMP-GMP synthase, MAGNESIUM ION
Authors:Yang, C.-S, Hou, M.-H, Tsai, C.-L, Wang, Y.-C, Ko, T.-P, Chen, Y.
Deposit date:2020-09-24
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal structure and functional implication of a bacterial cyclic AMP-AMP-GMP synthetase.
Nucleic Acids Res., 49, 2021
7D48
DownloadVisualize
BU of 7d48 by Molmil
apo-form cyclic trinucleotide synthase CdnD
Descriptor: Cyclic AMP-AMP-GMP synthase, SODIUM ION
Authors:Yang, C.-S, Hou, M.-H, Tsai, C.-L, Wang, Y.-C, Ko, T.-P, Chen, Y.
Deposit date:2020-09-23
Release date:2021-03-17
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure and functional implication of a bacterial cyclic AMP-AMP-GMP synthetase.
Nucleic Acids Res., 49, 2021
6LP2
DownloadVisualize
BU of 6lp2 by Molmil
Structure of Lpg2148/UBE2N-Ub complex
Descriptor: Ubiquitin, Ubiquitin-conjugating enzyme E2 N, Uncharacterized protein lpg2148
Authors:Feng, Y, Wang, Y, Huang, Y, Li, D.
Deposit date:2020-01-08
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.479 Å)
Cite:Structure of Lpg2148/UBE2N-Ub complex
To Be Published

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon