4ZIB

Crystal Structure of the C-terminal domain of PylRS mutant bound with 3-benzothienyl-l-alanine and ATP

Summary for 4ZIB

DescriptorPyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ... (6 entities in total)
Functional Keywordsaminoacyl-trna synthetases, archaeal proteins, evolution, molecular, genetic code, substrate specificity, ligase
Biological sourceMethanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Cellular locationCytoplasm  Q8PWY1
Total number of polymer chains1
Total molecular weight34620.01
Authors
Nakamura, A.,Guo, L.T.,Wang, Y.S.,Soll, D. (deposition date: 2015-04-28, release date: 2016-03-02)
Primary citation
Englert, M.,Nakamura, A.,Wang, Y.S.,Eiler, D.,Soll, D.,Guo, L.T.
Probing the active site tryptophan of Staphylococcus aureus thioredoxin with an analog.
Nucleic Acids Res., 43:11061-11067, 2015
PubMed: 26582921 (PDB entries with the same primary citation)
DOI: 10.1093/nar/gkv1255
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.054 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.202100.4%7.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 4zib
no rotation
Molmil generated image of 4zib
rotated about x axis by 90°
Molmil generated image of 4zib
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 4zib
no rotation
Molmil generated image of 4zib
rotated about x axis by 90°
Molmil generated image of 4zib
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (4zib.pdb1.gz [95.88 KB])
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