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4ZIB

Crystal Structure of the C-terminal domain of PylRS mutant bound with 3-benzothienyl-l-alanine and ATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0005524molecular_functionATP binding
A0043039biological_processtRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 501
ChainResidue
AATP504
AHOH607
AHOH660
AHOH662
AHOH693

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 502
ChainResidue
AHOH686
AHOH702
AGLU396
ASER399
AMG503
AATP504

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 503
ChainResidue
AGLU396
AMG502
AATP504
AHOH659
AHOH686
AHOH726

site_idAC4
Number of Residues26
Detailsbinding site for residue ATP A 504
ChainResidue
AARG330
AGLU332
AHIS338
ALEU339
APHE342
AMET344
AGLU396
ALEU397
ASER398
ASER399
AGLY421
AGLY423
AARG426
AMG501
AMG502
AMG503
AEDO510
AHOH607
AHOH651
AHOH659
AHOH660
AHOH662
AHOH674
AHOH686
AHOH693
AHOH702

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 505
ChainResidue
AASN241
AARG439
AALA440
AASN448
AGLY449
AHOH612

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 506
ChainResidue
ATYR242
AGLU249
ALYS431
AHIS432

site_idAC7
Number of Residues3
Detailsbinding site for residue EDO A 507
ChainResidue
AASP256
AARG257
AHIS369

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 508
ChainResidue
AASP373
ALYS375
AHIS392
AGLY393
AHOH663

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO A 509
ChainResidue
AASP313
AMET350
AGLY412
AILE413
AASP414
ALYS415
AHOH605

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 510
ChainResidue
AHIS338
AASP394
AGLU396
AARG426
AATP504

site_idAD2
Number of Residues6
Detailsbinding site for residue EDO A 511
ChainResidue
ATYR272
AASN307
AARG310
ALYS311
AGLU357
AGLU444

site_idAD3
Number of Residues7
Detailsbinding site for residue 4OG A 512
ChainResidue
AMET300
ALEU301
AALA302
ALEU305
AMET344
ASER399
AHOH651

218853

PDB entries from 2024-04-24

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