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PDB: 578 results

3SFW
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BU of 3sfw by Molmil
Crystal structure of dihydropyrimidinase from Brevibacillus agri NCHU1002
Descriptor: ACETATE ION, Dihydropyrimidinase, ZINC ION
Authors:Wang, W.C, Wu, H.M.
Deposit date:2011-06-14
Release date:2012-06-20
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of dihydropyrimidinase from Brevibacillus agri NCHU1002
To be Published
5W1R
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BU of 5w1r by Molmil
Cryo-EM structure of DNAPKcs
Descriptor: DNA-dependent protein kinase catalytic subunit
Authors:Sharif, H, Li, Y, Wu, H.
Deposit date:2017-06-04
Release date:2017-07-19
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Cryo-EM structure of the DNA-PK holoenzyme.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6KW3
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BU of 6kw3 by Molmil
The ClassA RSC-Nucleosome Complex
Descriptor: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC3, ...
Authors:Ye, Y.P, Wu, H, Chen, K.J, Verma, N, Cairns, B, Gao, N, Chen, Z.C.
Deposit date:2019-09-05
Release date:2019-11-13
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (7.13 Å)
Cite:Structure of the RSC complex bound to the nucleosome.
Science, 366, 2019
2MA1
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BU of 2ma1 by Molmil
Solution structure of HRDC1 domain of RecQ helicase from Deinococcus radiodurans
Descriptor: DNA helicase RecQ
Authors:Liu, S, Zhang, W, Gao, Z, Ming, Q, Hou, H, Lan, W, Wu, H, Cao, C, Dong, Y.
Deposit date:2013-06-24
Release date:2013-07-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of the N-terminal-most HRDC1 domain of RecQ helicase from Deinococcus radiodurans
To be Published
6KW4
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BU of 6kw4 by Molmil
The ClassB RSC-Nucleosome Complex
Descriptor: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC3, ...
Authors:Ye, Y.P, Wu, H, Chen, K.J, Verma, N, Cairns, B, Gao, N, Chen, Z.C.
Deposit date:2019-09-06
Release date:2019-11-13
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (7.55 Å)
Cite:Structure of the RSC complex bound to the nucleosome.
Science, 366, 2019
7WG3
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BU of 7wg3 by Molmil
Structural basis of interleukin-17B receptor in complex with a neutralizing antibody D9 for guiding humanization and affinity maturation for cancer therapy
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D9 Fab, IL17RB protein, ...
Authors:Lee, W.H, Chen, X.R, Liu, I.J, Lee, J.H, Hu, C.M, Wu, H.C, Wang, S.K, Lee, W.H, Ma, C.
Deposit date:2021-12-28
Release date:2022-11-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural basis of interleukin-17B receptor in complex with a neutralizing antibody for guiding humanization and affinity maturation.
Cell Rep, 41, 2022
6LM3
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BU of 6lm3 by Molmil
Neutralization mechanism of a monoclonal antibody targeting a porcine circovirus type 2 Cap protein conformational epitope
Descriptor: Capsid protein
Authors:Sun, Z, Huang, L, Xia, D, Wei, Y, Sun, E, Zhu, H, Bian, H, Wu, H, Feng, L, Wang, J, Liu, C.
Deposit date:2019-12-24
Release date:2020-02-12
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Neutralization Mechanism of a Monoclonal Antibody Targeting a Porcine Circovirus Type 2 Cap Protein Conformational Epitope.
J.Virol., 94, 2020
4LCT
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BU of 4lct by Molmil
Crystal Structure and Versatile Functional Roles of the COP9 Signalosome Subunit 1
Descriptor: COP9 signalosome complex subunit 1, SULFATE ION
Authors:Lee, J.-H, Yi, L, Li, J, Schweitzer, K, Borgmann, M, Naumann, M, Wu, H.
Deposit date:2013-06-23
Release date:2013-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure and versatile functional roles of the COP9 signalosome subunit 1.
Proc.Natl.Acad.Sci.USA, 110, 2013
4LEC
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BU of 4lec by Molmil
Human Methyltransferase-Like Protein 21A
Descriptor: Protein-lysine methyltransferase METTL21A, S-ADENOSYL-L-HOMOCYSTEINE, UNKNOWN ATOM OR ION
Authors:Dong, A, Zeng, H, Fenner, M, Wernimont, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2013-06-25
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:The Crystal Structure of Human Methyltransferase-Like Protein 21A in Complex with SAH
To be Published
3HCT
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BU of 3hct by Molmil
Crystal structure of TRAF6 in complex with Ubc13 in the P1 space group
Descriptor: TNF receptor-associated factor 6, Ubiquitin-conjugating enzyme E2 N, ZINC ION
Authors:Yin, Q, Lin, S.-C, Lamothe, B, Lu, M, Lo, Y.-C, Hura, G, Zheng, L, Rich, R.L, Campos, A.D, Myszka, D.G, Lenardo, M.J, Darnay, B.G, Wu, H.
Deposit date:2009-05-06
Release date:2009-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:E2 interaction and dimerization in the crystal structure of TRAF6.
Nat.Struct.Mol.Biol., 16, 2009
6JON
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BU of 6jon by Molmil
Crystal structures of phage NrS-1 N300-dNTPs-Mg2+ complex provide molecular mechanisms for substrate specificity
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MAGNESIUM ION, Primase
Authors:Guo, H.J, Li, M.J, Wu, H, Yu, F, He, J.H.
Deposit date:2019-03-22
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Crystal structures of phage NrS-1 N300-dNTPs-Mg2+complex provide molecular mechanisms for substrate specificity.
Biochem.Biophys.Res.Commun., 515, 2019
6JOP
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BU of 6jop by Molmil
Crystal structures of phage NrS-1 N300-dNTPs-Mg2+ complex provide molecular mechanisms for substrate specificity
Descriptor: MAGNESIUM ION, Primase, THYMIDINE-5'-TRIPHOSPHATE
Authors:Guo, H.J, Li, M.J, Wu, H, Yu, F, He, J.H.
Deposit date:2019-03-22
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.353 Å)
Cite:Crystal structures of phage NrS-1 N300-dNTPs-Mg2+complex provide molecular mechanisms for substrate specificity.
Biochem.Biophys.Res.Commun., 515, 2019
5Z8I
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BU of 5z8i by Molmil
Solution structure of the SBDbeta domain of yeast Ssa1
Descriptor: Heat shock protein SSA1
Authors:Gong, W, Hu, W, Wu, H, Perrett, S.
Deposit date:2018-01-31
Release date:2018-09-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The C-terminal GGAP motif of Hsp70 mediates substrate recognition and stress response in yeast.
J. Biol. Chem., 293, 2018
4QL1
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BU of 4ql1 by Molmil
Crystal structure of human WDR5 in complex with compound OICR-9429
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, N-(4-(4-methylpiperazin-1-yl)-3'-(morpholinomethyl)-[1,1'-biphenyl]-3-yl)-6-oxo-4-(trifluoromethyl)-1,6-dihydropyridine-3-carboxamide, ...
Authors:Dong, A, Dombrovski, L, Walker, J.R, Getlik, M, Kuznetsova, E, Smil, D, Barsyte, D, Li, F, Poda, G, Senisterra, G, Marcellus, R, Al-Awar, R, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Schapira, M, Vedadi, M, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2014-06-10
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Pharmacological targeting of the Wdr5-MLL interaction in C/EBP alpha N-terminal leukemia.
Nat.Chem.Biol., 11, 2015
4LD6
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BU of 4ld6 by Molmil
PWWP domain of human PWWP Domain-Containing Protein 2B
Descriptor: GLYCEROL, PWWP domain-containing protein 2B, UNKNOWN ATOM OR ION
Authors:Dong, A, Dombrovski, L, Tempel, W, Loppnau, P, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2013-06-24
Release date:2013-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of PWWP domain of human PWWP Domain-Containing Protein 2B
To be Published
5V7Z
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BU of 5v7z by Molmil
SSNMR Structure of the Human RIP1/RIP3 Necrosome
Descriptor: PRO-LEU-VAL-ASN-ILE-TYR-ASN-CYS-SER-GLY-VAL-GLN-VAL-GLY-ASP, THR-ILE-TYR-ASN-SER-THR-GLY-ILE-GLN-ILE-GLY-ALA-TYR-ASN-TYR-MET-GLU-ILE
Authors:Mompean, M, Li, W, Li, J, Laage, S, Siemer, A.B, Wu, H, McDermott, A.E.
Deposit date:2017-03-21
Release date:2018-03-28
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:The Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex.
Cell, 173, 2018
3KNV
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BU of 3knv by Molmil
Crystal structure of the RING and first zinc finger domains of TRAF2
Descriptor: TNF receptor-associated factor 2, ZINC ION
Authors:Yin, Q, Wu, H.
Deposit date:2009-11-12
Release date:2009-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for the lack of E2 interaction in the RING domain of TRAF2.
Biochemistry, 48, 2009
3C2S
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BU of 3c2s by Molmil
Structural Characterization of a Human Fc Fragment Engineered for Lack of Effector Functions
Descriptor: IGHM protein, ZINC ION, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Oganesyan, V, Wu, H, Dall'Acqua, W.F.
Deposit date:2008-01-25
Release date:2008-08-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterization of a human Fc fragment engineered for lack of effector functions.
Acta Crystallogr.,Sect.D, 64, 2008
2MB9
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BU of 2mb9 by Molmil
Human Bcl10 CARD
Descriptor: B-cell lymphoma/leukemia 10
Authors:Zheng, C, Bracken, C, Wu, H.
Deposit date:2013-07-26
Release date:2013-10-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Architecture of the CARMA1/Bcl10/MALT1 Signalosome: Nucleation-Induced Filamentous Assembly.
Mol.Cell, 51, 2013
5W0R
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BU of 5w0r by Molmil
Crystal structure of MBP fused activation-induced cytidine deaminase (AID) in complex with cacodylic acid
Descriptor: CACODYLATE ION, CALCIUM ION, MBP fused activation-induced cytidine deaminase, ...
Authors:Qiao, Q, Wang, L, Wu, H.
Deposit date:2017-05-31
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:AID Recognizes Structured DNA for Class Switch Recombination.
Mol. Cell, 67, 2017
5W0U
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BU of 5w0u by Molmil
Crystal structure of MBP fused activation-induced cytidine deaminase (AID) in complex with dCMP
Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*TP*GP*AP*AP*C)-3'), ...
Authors:Qiao, Q, Wang, L, Wu, H.
Deposit date:2017-05-31
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:AID Recognizes Structured DNA for Class Switch Recombination.
Mol. Cell, 67, 2017
5W1C
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BU of 5w1c by Molmil
Crystal structure of MBP fused activation-induced cytidine deaminase (AID) in complex with cytidine
Descriptor: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, CALCIUM ION, DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*TP*GP*AP*AP*C)-3'), ...
Authors:Qiao, Q, Wang, L, Wu, H.
Deposit date:2017-06-02
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:AID Recognizes Structured DNA for Class Switch Recombination.
Mol. Cell, 67, 2017
2PKU
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BU of 2pku by Molmil
Solution structure of PICK1 PDZ in complex with the carboxyl tail peptide of GluR2
Descriptor: PRKCA-binding protein, peptide (GLU)(SER)(VAL)(LYS)(ILE)
Authors:Pan, L, Wu, H, Shen, C, Shi, Y, Xia, J, Zhang, M.
Deposit date:2007-04-18
Release date:2007-11-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Clustering and synaptic targeting of PICK1 requires direct interaction between the PDZ domain and lipid membranes
Embo J., 26, 2007
6KW5
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BU of 6kw5 by Molmil
The ClassC RSC-Nucleosome Complex
Descriptor: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC3, ...
Authors:Ye, Y.P, Wu, H, Chen, K.J, Verma, N, Cairns, B, Gao, N, Chen, Z.C.
Deposit date:2019-09-06
Release date:2020-09-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (10.13 Å)
Cite:Structure of the RSC complex bound to the nucleosome
To Be Published
8G16
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BU of 8g16 by Molmil
CryoEM structure of cytoplasmic GAPDH under 24h Oxidative Stress
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.07 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023

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