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PDB: 12929 results

8H6L
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BU of 8h6l by Molmil
Cryo-EM structure of human exon-defined spliceosome in the early B state.
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Zhang, W, Zhan, X, Zhang, X, Bai, R, Lei, J, Yan, C, Shi, Y.
Deposit date:2022-10-18
Release date:2024-05-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural insights into human exon-defined spliceosome prior to activation.
Cell Res., 34, 2024
4JXR
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BU of 4jxr by Molmil
Crystal structure of a GNAT superfamily phosphinothricin acetyltransferase (Pat) from Sinorhizobium meliloti in complex with AcCoA
Descriptor: ACETYL COENZYME *A, Acetyltransferase, CITRATE ANION, ...
Authors:Majorek, K.A, Cooper, D.R, Porebski, P.J, Konina, K, Ahmed, M, Stead, M, Hillerich, B, Seidel, R, Bonanno, J.B, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-03-28
Release date:2013-05-15
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal structure of a GNAT superfamily phosphinothricin acetyltransferase (Pat) from Sinorhizobium meliloti in complex with AcCoA
To be Published
4J87
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BU of 4j87 by Molmil
Crystal structure of alpha-COP
Descriptor: coatomer subunit alpha
Authors:Ma, W, Goldberg, J.
Deposit date:2013-02-14
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Rules for the recognition of dilysine retrieval motifs by coatomer.
Embo J., 32, 2013
4J9S
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BU of 4j9s by Molmil
Human DNA polymerase eta-DNA translocated binary complex: with TA base pair
Descriptor: DNA (5'-D(*T*AP*TP*TP*TP*AP*TP*GP*AP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*TP*CP*AP*TP*A)-3'), DNA polymerase eta, ...
Authors:Zhao, Y, Gregory, M, Biertumpfel, C, Hua, Y, Hanaoka, F, Yang, W.
Deposit date:2013-02-16
Release date:2013-05-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mechanism of somatic hypermutation at the WA motif by human DNA polymerase eta.
Proc.Natl.Acad.Sci.USA, 110, 2013
4J9R
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BU of 4j9r by Molmil
Human DNA polymerase eta-DNA translocated binary complex with TG mispair
Descriptor: DNA (5'-D(*T*AP*CP*TP*TP*AP*TP*GP*AP*CP*GP*T)-3'), DNA (5'-D(P*TP*AP*CP*GP*TP*CP*AP*TP*G)-3'), DNA polymerase eta, ...
Authors:Zhao, Y, Gregory, M, Biertumpfel, C, Hua, Y, Hanaoka, F, Yang, W.
Deposit date:2013-02-16
Release date:2013-05-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Mechanism of somatic hypermutation at the WA motif by human DNA polymerase eta.
Proc.Natl.Acad.Sci.USA, 110, 2013
8UKE
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BU of 8uke by Molmil
Crystal Structure of Norbelladine O-methyltransferase variant in complex with SAH
Descriptor: CALCIUM ION, Norbelladine 4'-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kim, W, Zhang, Y.J.
Deposit date:2023-10-12
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme.
Nat Commun, 15, 2024
4JA9
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BU of 4ja9 by Molmil
Rat PP5 apo
Descriptor: MAGNESIUM ION, Serine/threonine-protein phosphatase 5
Authors:Haslbeck, V, Helmuth, M, Alte, F, Popowicz, G, Schmidt, W, Weiwad, M, Fischer, G, Gemmecker, G, Sattler, M, Striggow, F, Groll, M, Richter, K.
Deposit date:2013-02-18
Release date:2014-02-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Selective activators of protein phosphatase 5 target the auto-inhibitory mechanism.
Biosci.Rep., 35, 2015
4JBJ
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Structural mimicry for functional antagonism
Descriptor: Interferon-activable protein 202
Authors:Ru, H, Ni, X, Ma, F, Zhao, L, Ding, W, Hung, L.-W, Shaw, N, Cheng, G, Liu, Z.-J.
Deposit date:2013-02-19
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.692 Å)
Cite:Structural basis for termination of AIM2-mediated signaling by p202
Cell Res., 23, 2013
3SOV
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BU of 3sov by Molmil
The structure of a beta propeller domain in complex with peptide S
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Low-density lipoprotein receptor-related protein 6, ...
Authors:Wang, W, Bourhis, E, Zhang, Y, Rouge, L, Wu, Y, Franke, Y, Cochran, A.G.
Deposit date:2011-06-30
Release date:2011-09-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Wnt antagonists bind through a short peptide to the first beta-propeller domain of LRP5/6.
Structure, 19, 2011
8HIH
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BU of 8hih by Molmil
Cryo-EM structure of Mycobacterium tuberculosis transcription initiation complex with transcription factor GlnR
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Lin, W, Shi, J, Xu, J.C.
Deposit date:2022-11-20
Release date:2023-06-07
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:Structural insights into the transcription activation mechanism of the global regulator GlnR from actinobacteria.
Proc.Natl.Acad.Sci.USA, 120, 2023
3T7B
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BU of 3t7b by Molmil
Crystal Structure of N-acetyl-L-glutamate kinase from Yersinia pestis
Descriptor: Acetylglutamate kinase, GLUTAMIC ACID, S,R MESO-TARTARIC ACID
Authors:Demas, M.W, Solberg, R.G, Cooper, D.R, Chruszcz, M, Porebski, P.J, Zheng, H, Onopriyenko, O, Skarina, T, Savchenko, A, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-07-29
Release date:2011-09-14
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of N-acetyl-L-glutamate kinase from Yersinia pestis
To be Published
3SSV
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BU of 3ssv by Molmil
Engineered low-affinity halide-binding protein derived from YFP: fluoride complex
Descriptor: FLUORIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.861 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
4JHX
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BU of 4jhx by Molmil
Crystal structure of anabolic ornithine carbamoyltransferase from Vibrio vulnificus in complex with carbamoylphosphate and arginine
Descriptor: ARGININE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Shabalin, I.G, Bacal, P, Winsor, J, Grimshaw, S, Grabowski, M, Chordia, M.D, Shuvalova, L, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2013-03-05
Release date:2013-03-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures and kinetic properties of anabolic ornithine carbamoyltransferase from human pathogens Vibrio vulnificus and Bacillus anthracis
To be Published
4JIF
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BU of 4jif by Molmil
Co-crystal structure of ICAP1 PTB domain in complex with a KRIT1 peptide
Descriptor: Integrin beta-1-binding protein 1, Krev interaction trapped protein 1
Authors:Liu, W, Boggon, T.J.
Deposit date:2013-03-05
Release date:2013-05-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Cocrystal structure of the ICAP1 PTB domain in complex with a KRIT1 peptide.
Acta Crystallogr.,Sect.F, 69, 2013
8K5U
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BU of 8k5u by Molmil
Se-glycosyltransferase RsSenB
Descriptor: Se glycosyltransferase
Authors:Huang, W, Long, F.
Deposit date:2023-07-24
Release date:2024-02-07
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of RsSenB at 2.15 Angstroms resolution
To Be Published
3SVD
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BU of 3svd by Molmil
Engineered medium-affinity halide-binding protein derived from YFP: bromide complex
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-12
Release date:2012-07-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3TAP
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BU of 3tap by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-3) Position
Descriptor: 5'-D(*G*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', DNA polymerase I, ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-04
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.655 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3TCU
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BU of 3tcu by Molmil
Crystal Structure of NaK2K Channel D68E Mutant
Descriptor: POTASSIUM ION, Potassium channel protein
Authors:Sauer, D.B, Zeng, W, Raghunathan, S, Jiang, Y.
Deposit date:2011-08-09
Release date:2011-10-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Protein interactions central to stabilizing the K+ channel selectivity filter in a four-sited configuration for selective K+ permeation.
Proc.Natl.Acad.Sci.USA, 108, 2011
5Z2L
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BU of 5z2l by Molmil
Crystal structure of BdcA in complex with NADPH
Descriptor: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, Cyclic-di-GMP-binding biofilm dispersal mediator protein, ...
Authors:Yang, W.S, Hou, Y.J, Li, D.F, Wang, D.C.
Deposit date:2018-01-03
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A potential substrate binding pocket of BdcA plays a critical role in NADPH recognition and biofilm dispersal
Biochem. Biophys. Res. Commun., 497, 2018
8UEP
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BU of 8uep by Molmil
In-situ complex I, Active-Q10 (State-alpha)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
Authors:Zheng, W, Zhu, J, Zhang, K.
Deposit date:2023-10-02
Release date:2024-06-19
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
8UEY
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BU of 8uey by Molmil
In-situ complex I, Deactive class07
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ...
Authors:Zheng, W, Zhu, J, Zhang, K.
Deposit date:2023-10-02
Release date:2024-06-19
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
4JXU
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BU of 4jxu by Molmil
Structure of aminotransferase ilvE2 from Sinorhizobium meliloti complexed with PLP
Descriptor: Putative aminotransferase
Authors:Cooper, D.R, Cymborowski, M.T, Majorek, K.A, Niedzialkowska, E, Porebski, P.J, Stead, M, Hammonds, J, Seidel, R, Ahmed, M, Bonanno, J.B, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-03-28
Release date:2013-05-29
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of aminotransferase ilvE2 from Sinorhizobium meliloti complexed with PLP
To be Published
8UGD
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BU of 8ugd by Molmil
In-situ complex III, state I
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
Authors:Zheng, W, Zhang, K, Zhu, J.
Deposit date:2023-10-05
Release date:2024-06-19
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
8UEQ
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BU of 8ueq by Molmil
In-situ complex I with Q10 (State-beta)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
Authors:Zheng, W, Zhu, J, Zhang, K.
Deposit date:2023-10-02
Release date:2024-06-19
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
4JXT
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BU of 4jxt by Molmil
CID of human RPRD1A in complex with a phosphorylated peptide from RPB1-CTD
Descriptor: DNA-directed RNA polymerase II subunit RPB1, Regulation of nuclear pre-mRNA domain-containing protein 1A, UNKNOWN ATOM OR ION
Authors:Ni, Z, Xu, C, Tempel, W, El Bakkouri, M, Loppnau, P, Guo, X, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Greenblatt, J.F, Structural Genomics Consortium (SGC)
Deposit date:2013-03-28
Release date:2013-11-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation.
Nat.Struct.Mol.Biol., 21, 2014

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PDB entries from 2024-08-07

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