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PDB: 12929 results

3NUD
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The structure of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase from mycobacterium tuberculosis complexed with phenylalanine
Descriptor: PHENYLALANINE, PHOSPHATE ION, Probable 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AroG
Authors:Parker, E.J, Jameson, G.B, Jiao, W, Webby, C.J, Baker, E.N, Baker, H.M.
Deposit date:2010-07-06
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Synergistic allostery, a sophisticated regulatory network for the control of aromatic amino acid biosynthesis in Mycobacterium tuberculosis
J.Biol.Chem., 285, 2010
2G8H
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BU of 2g8h by Molmil
B. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)
Descriptor: 5'-D(*AP*TP*GP*TP*CP*G)-3', 5'-R(*UP*CP*GP*AP*CP*A)-3', MAGNESIUM ION, ...
Authors:Nowotny, M, Yang, W.
Deposit date:2006-03-02
Release date:2006-04-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release.
Embo J., 25, 2006
3NX2
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Enterobacter sp. Px6-4 Ferulic Acid Decarboxylase in complex with substrate analogues
Descriptor: 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, Ferulic acid decarboxylase
Authors:Gu, W, Yang, J.K, Lou, Z.Y, Meng, Z.H, Zhang, K.-Q.
Deposit date:2010-07-12
Release date:2011-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural Basis of Enzymatic Activity for the Ferulic Acid Decarboxylase (FADase) from Enterobacter sp. Px6-4
Plos One, 6, 2011
2G8Y
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The structure of a putative malate/lactate dehydrogenase from E. coli.
Descriptor: 1,2-ETHANEDIOL, Malate/L-lactate dehydrogenases, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Cuff, M.E, Skarina, T, Edwards, A, Savchenko, A, Cymborowski, M, Minor, W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-03-03
Release date:2006-04-25
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The structure of a putative malate/lactate dehydrogenase from E. coli.
To be Published
3O1U
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Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase
Descriptor: Alpha-ketoglutarate-dependent dioxygenase AlkB, DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDV)P*AP*CP*CP*GP*T)-3'), ...
Authors:Yi, C, Jia, G, Hou, G, Dai, Q, Zhang, W, Zheng, G, Jian, X, Yang, C.-G, Cui, Q, He, C.
Deposit date:2010-07-22
Release date:2010-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase.
Nature, 468, 2010
1J74
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Crystal Structure of Mms2
Descriptor: MMS2
Authors:Moraes, T.F, Edwards, R.A, McKenna, S, Pastushok, L, Xiao, W, Glover, J.N.M, Ellison, M.J.
Deposit date:2001-05-15
Release date:2001-08-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the human ubiquitin conjugating enzyme complex, hMms2-hUbc13.
Nat.Struct.Biol., 8, 2001
3EYV
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BU of 3eyv by Molmil
Anti-Lewis Y Fab fragment with Lewis Y antigen in the presence of zinc ions
Descriptor: GLYCEROL, ZINC ION, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-alpha-D-glucopyranose, ...
Authors:Farrugia, W, Scott, A.M, Ramsland, P.A.
Deposit date:2008-10-22
Release date:2009-11-03
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A possible role for metallic ions in the carbohydrate cluster recognition displayed by a lewis y specific antibody.
Plos One, 4, 2009
3O1O
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Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase
Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase AlkB, DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), ...
Authors:Yi, C, Jia, G, Hou, G, Dai, Q, Zhang, W, Zheng, G, Jian, X, Yang, C.-G, Cui, Q, He, C.
Deposit date:2010-07-21
Release date:2010-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase
Nature, 468, 2010
1UYC
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Human Hsp90-alpha with 9-Butyl-8-(2,5-dimethoxy-benzyl)-9H-purin-6-ylamine
Descriptor: 9-BUTYL-8-(2,5-DIMETHOXY-BENZYL)-9H-PURIN-6-YLAMINE, HEAT SHOCK PROTEIN HSP 90-ALPHA
Authors:Wright, L, Barril, X, Dymock, B, Sheridan, L, Surgenor, A, Beswick, M, Drysdale, M, Collier, A, Massey, A, Davies, N, Fink, A, Fromont, C, Aherne, W, Boxall, K, Sharp, S, Workman, P, Hubbard, R.E.
Deposit date:2004-03-02
Release date:2004-07-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Activity Relationships in Purine-Based Inhibitor Binding to Hsp90 Isoforms
Chem.Biol., 11, 2004
1J7D
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BU of 1j7d by Molmil
Crystal Structure of hMms2-hUbc13
Descriptor: MMS2, UBIQUITIN-CONJUGATING ENZYME E2-17 KDA
Authors:Moraes, T.F, Edwards, R.A, McKenna, S, Pashushok, L, Xiao, W, Glover, J.N.M, Ellison, M.J.
Deposit date:2001-05-16
Release date:2001-08-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the human ubiquitin conjugating enzyme complex, hMms2-hUbc13.
Nat.Struct.Biol., 8, 2001
1UY7
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BU of 1uy7 by Molmil
Human Hsp90-alpha with 9-Butyl-8-(4-methoxy-benzyl)-9H-purin-6-ylamine
Descriptor: 9-BUTYL-8-(4-METHOXYBENZYL)-9H-PURIN-6-AMINE, HEAT SHOCK PROTEIN HSP 90-ALPHA
Authors:Wright, L, Barril, X, Dymock, B, Sheridan, L, Surgenor, A, Beswick, M, Drysdale, M, Collier, A, Massey, A, Davies, N, Fink, A, Fromont, C, Aherne, W, Boxall, K, Sharp, S, Workman, P, Hubbard, R.E.
Deposit date:2004-03-02
Release date:2004-07-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Activity Relationships in Purine-Based Inhibitor Binding to Hsp90 Isoforms
Chem.Biol., 11, 2004
2G3A
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BU of 2g3a by Molmil
Crystal structure of putative acetyltransferase from Agrobacterium tumefaciens
Descriptor: acetyltransferase
Authors:Cymborowski, M, Xu, X, Chruszcz, M, Zheng, H, Gu, J, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-02-17
Release date:2006-03-14
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of putative acetyltransferase from Agrobacterium tumefaciens
To be Published
2L62
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BU of 2l62 by Molmil
Protein and metal cluster structure of the wheat metallothionein domain g-Ec-1. The second part of the puzzle.
Descriptor: EC protein I/II, ZINC ION
Authors:Loebus, J, Peroza, E.A, Bluethgen, N, Fox, T, Meyer-Klaucke, W, Zerbe, O, Freisinger, E.
Deposit date:2010-11-12
Release date:2011-05-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Protein and metal cluster structure of the wheat metallothionein domain gamma-E(c)-1: the second part of the puzzle.
J.Biol.Inorg.Chem., 16, 2011
2G6J
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BU of 2g6j by Molmil
Structure of rat nNOS (L337N) heme domain (4-aminobiopterin bound) complexed with NO
Descriptor: (1S,2S)-1-(2,4-DIAMINOPTERIDIN-6-YL)PROPANE-1,2-DIOL, ACETATE ION, ARGININE, ...
Authors:Li, H, Igarashi, J, Jamal, J, Yang, W, Poulos, T.L.
Deposit date:2006-02-24
Release date:2006-08-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural studies of constitutive nitric oxide synthases with diatomic ligands bound.
J.Biol.Inorg.Chem., 11, 2006
1URS
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BU of 1urs by Molmil
X-ray structures of the maltose-maltodextrin binding protein of the thermoacidophilic bacterium Alicyclobacillus acidocaldarius
Descriptor: MALTOSE-BINDING PROTEIN, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Schafer, K, Magnusson, U, Scheffel, F, Schiefner, A, Sandgren, M.O.J, Diederichs, K, Welte, W, Hulsmann, A, Schneider, E, Mowbray, S.L.
Deposit date:2003-11-04
Release date:2003-12-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:X-Ray Structures of the Maltose-Maltodextrin-Binding Protein of the Thermoacidophilic Bacterium Alicyclobacillus Acidocaldarius Provide Insight Into Acid Stability of Proteins
J.Mol.Biol., 335, 2004
1IQS
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BU of 1iqs by Molmil
Minimized average structure of MTH1880 from Methanobacterium Thermoautotrophicum
Descriptor: MTH1880
Authors:Lee, C.H, Shin, J, Bang, E, Jung, J.W, Yee, A, Arrowsmith, C.H, Lee, W.
Deposit date:2001-07-29
Release date:2002-07-29
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of a novel calcium binding protein, MTH1880, from Methanobacterium thermoautotrophicum.
Protein Sci., 13, 2004
1V59
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BU of 1v59 by Molmil
Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+
Descriptor: Dihydrolipoamide dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Adachi, W, Suzuki, K, Tsunoda, M, Sekiguchi, T, Reed, L.J, Takenaka, A.
Deposit date:2003-11-21
Release date:2005-02-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+
To be Published
2PC6
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BU of 2pc6 by Molmil
Crystal structure of putative acetolactate synthase- small subunit from Nitrosomonas europaea
Descriptor: CALCIUM ION, Probable acetolactate synthase isozyme III (Small subunit), UNKNOWN LIGAND
Authors:Petkowski, J.J, Chruszcz, M, Zimmerman, M.D, Zheng, H, Cymborowski, M.T, Skarina, T, Onopriyenko, O, Savchenko, A, Edwards, A, Minor, W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-03-29
Release date:2007-04-10
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of TM0549 and NE1324--two orthologs of E. coli AHAS isozyme III small regulatory subunit.
Protein Sci., 16, 2007
3IBZ
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BU of 3ibz by Molmil
Crystal structure of putative tellurium resistant like protein (TerD) from Streptomyces coelicolor A3(2)
Descriptor: CALCIUM ION, Putative tellurium resistant like protein TerD, SULFATE ION
Authors:Klimecka, M, Chruszcz, M, Cymborowski, M, Xu, X, Cui, H, Joachimiak, A, Edwards, A, Savchenko, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-07-17
Release date:2009-08-18
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of putative tellurium resistant like protein (TerD) from Streptomyces coelicolor A3(2)
To be Published
2PMY
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BU of 2pmy by Molmil
EF-hand domain of human RASEF
Descriptor: CALCIUM ION, RAS and EF-hand domain-containing protein, SULFATE ION, ...
Authors:Zhu, H, Shen, Y, Wang, J, Tempel, W, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2007-04-23
Release date:2007-05-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:EF-hand domain of human RASEF
To be Published
3IH4
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BU of 3ih4 by Molmil
TM1030 crystallized at 277K
Descriptor: Transcriptional regulator, TetR family
Authors:Koclega, K.D, Chruszcz, M, Bujacz, G, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-07-29
Release date:2009-08-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:'Hot' macromolecular crystals.
Cryst.Growth Des., 10, 2010
2PM5
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BU of 2pm5 by Molmil
Human alpha-defensin 1 derivative (HNP1)
Descriptor: Neutrophil defensin 1 (HNP-1) (HP-1) (HP1) (Defensin, alpha 1), PHOSPHATE ION
Authors:Lubkowski, J, Pazgier, M, Lu, W.
Deposit date:2007-04-20
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Human alpha-defensin 1 derivative (HNP1)
To be Published
2PR9
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BU of 2pr9 by Molmil
Mu2 adaptin subunit (AP50) of AP2 adaptor (second domain), complexed with GABAA receptor-gamma2 subunit-derived internalization peptide DEEYGYECL
Descriptor: AP-2 complex subunit mu-1, GABA(A) receptor subunit gamma-2 peptide
Authors:Vahedi-Faridi, A, Haucke, V, Kittler, J.T, Kukhtina, V, Moss, S.J, Saenger, W, Chen, G.-J, Tretter, V, Smith, K, Yan, Z, McAinsh, K, Arancibia-Carcamo, L.
Deposit date:2007-05-04
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Regulation of synaptic inhibition by phospho-dependent binding of the AP2 complex to a YECL motif in the GABAA receptor gamma2 subunit.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2JKH
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BU of 2jkh by Molmil
Factor Xa - cation inhibitor complex
Descriptor: 3-[(3~{a}~{S},4~{R},8~{a}~{S},8~{b}~{R})-4-[5-(5-chloranylthiophen-2-yl)-1,2-oxazol-3-yl]-1,3-bis(oxidanylidene)-4,6,7,8,8~{a},8~{b}-hexahydro-3~{a}~{H}-pyrrolo[3,4-a]pyrrolizin-2-yl]propyl-trimethyl-azanium, ACTIVATED FACTOR XA HEAVY CHAIN, CALCIUM ION, ...
Authors:Salonen, L.M, Bucher, C, Banner, D.W, Benz, J, Haap, W, Mary, J.L, Schweizer, W.B, Seiler, P, Kuster, O, Diederich, F.
Deposit date:2008-08-28
Release date:2009-01-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Cation-Pi Interactions at the Active Site of Factor Xa: Dramatic Enhancement Upon Stepwise N-Alkylation of Ammonium Ions.
Angew.Chem.Int.Ed.Engl., 48, 2009
2PSS
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BU of 2pss by Molmil
The structure of Plasmodium falciparum spermidine synthase in its apo-form
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, GLYCEROL, SULFATE ION, ...
Authors:Dufe, V.T, Qiu, W, Muller, I.B, Hui, R, Walter, R.D, Al-Karadaghi, S, Structural Genomics Consortium (SGC)
Deposit date:2007-05-07
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Plasmodium falciparum spermidine synthase in complex with the substrate decarboxylated S-adenosylmethionine and the potent inhibitors 4MCHA and AdoDATO.
J.Mol.Biol., 373, 2007

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