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PDB: 12920 件

7M80
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Human DNA Pol eta with dA-ended primer and dATP: in crystallo reaction for 100 s
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
著者Gregory, M.T, Gao, Y, Yang, W.
登録日2021-03-29
公開日2021-06-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction.
Proc.Natl.Acad.Sci.USA, 118, 2021
7M86
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Human DNA Pol eta S113A with dA-ended primer and dATP: in crystallo reaction for 140 s
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
著者Gregory, M.T, Gao, Y, Yang, W.
登録日2021-03-29
公開日2021-06-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction.
Proc.Natl.Acad.Sci.USA, 118, 2021
7M8C
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Human DNA Pol eta S113A with rA-ended primer and dATP: in crystallo reaction for 230 s
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
著者Gregory, M.T, Gao, Y, Yang, W.
登録日2021-03-29
公開日2021-06-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction.
Proc.Natl.Acad.Sci.USA, 118, 2021
7MBR
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Cryo-EM structure of zebrafish TRPM5 in the presence of 6 uM calcium (apo state)
分子名称: (25R)-14beta,17beta-spirost-5-en-3beta-ol, (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ruan, Z, Lu, W, Du, J, Haley, E.
登録日2021-04-01
公開日2021-07-07
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY
主引用文献Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition.
Nat.Struct.Mol.Biol., 28, 2021
7MBS
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Cryo-EM structure of zebrafish TRPM5 in the presence of 6 uM calcium (open state)
分子名称: (25R)-14beta,17beta-spirost-5-en-3beta-ol, (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ruan, Z, Lu, W, Du, J, Haley, E.
登録日2021-04-01
公開日2021-07-07
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY
主引用文献Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition.
Nat.Struct.Mol.Biol., 28, 2021
7MBT
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Cryo-EM structure of zebrafish TRPM5 E337A mutant in the presence of 5 mM calcium (low calcium occupancy in the transmembrane domain)
分子名称: (25R)-14beta,17beta-spirost-5-en-3beta-ol, (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ruan, Z, Lu, W, Du, J, Haley, E.
登録日2021-04-01
公開日2021-07-07
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY
主引用文献Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition.
Nat.Struct.Mol.Biol., 28, 2021
7MBQ
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Cryo-EM structure of zebrafish TRPM5 in the presence of 5 mM calcium
分子名称: (25R)-14beta,17beta-spirost-5-en-3beta-ol, (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ruan, Z, Lu, W, Du, J, Haley, E.
登録日2021-04-01
公開日2021-07-07
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition.
Nat.Struct.Mol.Biol., 28, 2021
7MBU
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BU of 7mbu by Molmil
Cryo-EM structure of zebrafish TRPM5 E337A mutant in the presence of 5 mM calcium (high calcium occupancy in the transmembrane domain)
分子名称: (25R)-14beta,17beta-spirost-5-en-3beta-ol, (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ruan, Z, Lu, W, Du, J, Haley, E.
登録日2021-04-01
公開日2021-07-07
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY
主引用文献Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition.
Nat.Struct.Mol.Biol., 28, 2021
7MBV
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BU of 7mbv by Molmil
Cryo-EM structure of zebrafish TRPM5 in the presence of 5 mM calcium and 0.5 mM NDNA
分子名称: (25R)-14beta,17beta-spirost-5-en-3beta-ol, (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ruan, Z, Lu, W, Du, J, Haley, E.
登録日2021-04-01
公開日2021-07-07
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition.
Nat.Struct.Mol.Biol., 28, 2021
7MOY
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Structure of HDAC2 in complex with an inhibitor (compound 19)
分子名称: (1S)-6-ethyl-N-{(1S)-1-[5-(2-ethyl-1-oxo-1,2-dihydroisoquinolin-6-yl)-1H-imidazol-2-yl]-7,7-dihydroxynonyl}-6-azaspiro[2.5]octane-1-carboxamide, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Klein, D.J, Yu, W.
登録日2021-05-03
公開日2021-07-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
7MOT
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Structure of HDAC2 in complex with an inhibitor (compound 9)
分子名称: 5-{(1S)-7,7-dihydroxy-1-[(1-methylazetidine-3-carbonyl)amino]nonyl}-2-phenyl-1H-imidazole-4-carboxamide, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Klein, D.J, Yu, W.
登録日2021-05-03
公開日2021-07-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
7MOS
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Structure of HDAC2 in complex with a macrocyclic inhibitor (compound 4)
分子名称: (3S,18S,20aR)-18-(6,6-dihydroxyoctyl)-1,5,6,7,8,18,19,20a-octahydro-4H-14,17-epiminoazeto[1,2-g][1,7,10,13]benzoxatriazacycloheptadecin-20(2H)-one, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Klein, D.J, Yu, W.
登録日2021-05-03
公開日2021-07-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.704 Å)
主引用文献Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
7MOX
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BU of 7mox by Molmil
Structure of HDAC2 in complex with an inhibitor (compound 14)
分子名称: (1S)-N-[(1S)-7,7-dihydroxy-1-{4-[(1R,4S)-1,2,3,4-tetrahydro-1,4-methanonaphthalen-6-yl]-1H-imidazol-2-yl}nonyl]-6-methyl-6-azaspiro[2.5]octane-1-carboxamide, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Klein, D.J, Yu, W.
登録日2021-05-03
公開日2021-07-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
7MOZ
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Structure of HDAC2 in complex with a macrocyclic inhibitor (compound 25)
分子名称: (1R,3S,6S,18R,27R)-6-(6,6-dihydroxyoctyl)-5,8,18,27,34-pentaazahexacyclo[25.2.2.1~7,10~.1~11,15~.1~14,18~.0~1,3~]tetratriaconta-7,9,11(33),12,14,16-hexaene-4,32-dione (non-preferred name), CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Klein, D.J, Yu, W.
登録日2021-05-03
公開日2021-07-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.543 Å)
主引用文献Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
7MSY
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BU of 7msy by Molmil
Structure of CalU17 from the Calicheamicin Biosynthesis Pathway of Micromonospora echinospora
分子名称: CALCIUM ION, CHLORIDE ION, CalU17, ...
著者Kosgei, A.J, Miller, M.D, Xu, W, Van Lanen, S.G, Thorson, J.S, Phillips Jr, G.N.
登録日2021-05-12
公開日2021-07-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Acta Crystallogr.,Sect.F, 78, 2022
7ML6
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BU of 7ml6 by Molmil
Structure of CalU17 from the Calicheamicin Biosynthesis Pathway of Micromonospora echinospora
分子名称: CalU17, GLYCEROL
著者Kosgei, A.J, Miller, M.D, Xu, W, Van Lanen, S.G, Thorson, J.S, Phillips Jr, G.N.
登録日2021-04-27
公開日2021-07-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Acta Crystallogr.,Sect.F, 78, 2022
7MDW
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BU of 7mdw by Molmil
CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb105
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, nanobody Nb105, ...
著者Huang, W, Taylor, D.J.
登録日2021-04-06
公開日2021-08-11
実験手法ELECTRON MICROSCOPY (3.58 Å)
主引用文献Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7MEJ
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CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb36
分子名称: Nanobody Nb21, Nanobody Nb36, Spike protein S1
著者Huang, W, Taylor, D.J.
登録日2021-04-06
公開日2021-08-11
実験手法ELECTRON MICROSCOPY (3.55 Å)
主引用文献Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7ME7
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BU of 7me7 by Molmil
CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb17 and Nb105
分子名称: Nanobody Nb105, Nanobody Nb17, Spike protein S1
著者Huang, W, Taylor, D.J.
登録日2021-04-06
公開日2021-08-11
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7MMN
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BU of 7mmn by Molmil
Crystal Structure of the Prefusion RSV F Glycoprotein bound by human antibody AM14
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, AM14 Fab Heavy Chain, AM14 Fab Light Chain, ...
著者Harshbarger, W, Malito, E.
登録日2021-04-29
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.57 Å)
主引用文献Improved epitope resolution of the prefusion trimer-specific antibody AM14 bound to the RSV F glycoprotein.
Mabs, 13, 2021
7MWX
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Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2 with tamarin CD81
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2A12 Fab Heavy Chain, ...
著者Kumar, A, Hossain, R.A, Yost, S.A, Bu, W, Wang, Y, Dearborn, A.D, Grakoui, A, Cohen, J.I, Marcotrigiano, J.
登録日2021-05-17
公開日2021-09-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.32 Å)
主引用文献Structural insights into hepatitis C virus receptor binding and entry.
Nature, 598, 2021
7MWS
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Crystal structure of tamarin CD81 large extracellular loop
分子名称: CD81 protein, GLYCEROL, TETRAETHYLENE GLYCOL
著者Kumar, A, Hossain, R.A, Yost, S.A, Bu, W, Wang, Y, Dearborn, A.D, Grakoui, A, Cohen, J.I, Marcotrigiano, J.
登録日2021-05-17
公開日2021-09-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insights into hepatitis C virus receptor binding and entry.
Nature, 598, 2021
7MWW
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Structure of hepatitis C virus envelope full-length glycoprotein 2 (eE2) from J6 genotype
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2A12 Fab Heavy chain, ...
著者Kumar, A, Hossain, R.A, Yost, S.A, Bu, W, Wang, Y, Dearborn, A.D, Grakoui, A, Cohen, J.I, Marcotrigiano, J.
登録日2021-05-17
公開日2021-09-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Structural insights into hepatitis C virus receptor binding and entry.
Nature, 598, 2021
7MBP
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Cryo-EM structure of zebrafish TRPM5 in the presence of 1 mM EDTA
分子名称: (25R)-14beta,17beta-spirost-5-en-3beta-ol, (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ruan, Z, Lu, W, Du, J, Haley, E.
登録日2021-04-01
公開日2021-09-22
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition.
Nat.Struct.Mol.Biol., 28, 2021
7AGA
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Structure of SARS-CoV-2 Main Protease bound to AT7519
分子名称: 3C-like proteinase, 4-{[(2,6-dichlorophenyl)carbonyl]amino}-N-piperidin-4-yl-1H-pyrazole-3-carboxamide, CHLORIDE ION, ...
著者Guenther, S, Reinke, P, Oberthuer, D, Yefanov, O, Gelisio, L, Ginn, H, Lieske, J, Domaracky, M, Brehm, W, Rahmani Mashour, A, White, T.A, Knoska, J, Pena Esperanza, G, Koua, F, Tolstikova, A, Groessler, M, Fischer, P, Hennicke, V, Fleckenstein, H, Trost, F, Galchenkova, M, Gevorkov, Y, Li, C, Awel, S, Paulraj, L.X, Ullah, N, Andaleeb, H, Werner, N, Falke, S, Hinrichs, W, Alves Franca, B, Schwinzer, M, Brognaro, H, Perbandt, M, Tidow, H, Seychell, B, Beck, T, Meier, S, Doyle, J.J, Giseler, H, Melo, D, Dunkel, I, Lane, T.J, Peck, A, Saouane, S, Hakanpaeae, J, Meyer, J, Noei, H, Boger, J, Gribbon, P, Ellinger, B, Kuzikov, M, Wolf, M, Zhang, L, Ehrt, C, Pletzer-Zelgert, J, Wollenhaupt, J, Feiler, C, Weiss, M, Schulz, E.C, Mehrabi, P, Norton-Baker, B, Schmidt, C, Lorenzen, K, Schubert, R, Han, H, Chari, A, Fernandez Garcia, Y, Turk, D, Hilgenfeld, R, Rarey, M, Zaliani, A, Chapman, H.N, Pearson, A, Betzel, C, Meents, A.
登録日2020-09-22
公開日2020-12-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease.
Science, 372, 2021

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