Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12920 件

5KAB
DownloadVisualize
BU of 5kab by Molmil
Protein Tyrosine Phosphatase 1B Delta helix 7, P185G mutant in complex with TCS401, open state
分子名称: 2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
著者Choy, M.S, Machado, L.E.S.F, Peti, W, Page, R.
登録日2016-06-01
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.968 Å)
主引用文献Conformational Rigidity and Protein Dynamics at Distinct Timescales Regulate PTP1B Activity and Allostery.
Mol. Cell, 65, 2017
1LWJ
DownloadVisualize
BU of 1lwj by Molmil
CRYSTAL STRUCTURE OF T. MARITIMA 4-ALPHA-GLUCANOTRANSFERASE/ACARBOSE COMPLEX
分子名称: 4-ALPHA-GLUCANOTRANSFERASE, CALCIUM ION, MODIFIED ACARBOSE PENTASACCHARIDE
著者Roujeinikova, A, Raasch, C, Sedelnikova, S, Liebl, W, Rice, D.W.
登録日2002-05-31
公開日2002-08-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA 4-ALPHA-GLUCANOTRANSFERASE AND ITS ACARBOSE COMPLEX: IMPLICATIONS FOR SUBSTRATE SPECIFICITY AND CATALYSIS
J.Mol.Biol., 321, 2002
8PCT
DownloadVisualize
BU of 8pct by Molmil
Structure of serine-beta-lactamase CTX-M-14 following the time-resolved active site binding of boric acid and subsequent glycerol-boric acid-ester formation, 2500 ms
分子名称: BORATE ION, Beta-lactamase, SULFATE ION, ...
著者Prester, A, Perbandt, M, Galchenkova, M, Oberthuer, D, Yefanov, O, Hinrichs, W, Rohde, H, Betzel, C.
登録日2023-06-11
公開日2024-06-26
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024
5J41
DownloadVisualize
BU of 5j41 by Molmil
Glutathione S-transferase bound with hydrolyzed Piperlongumine
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-(3,4,5-trimethoxyphenyl)propanoic acid, GLUTATHIONE, ...
著者Harshbarger, W, Gondi, S, Ficarro, S, Hunter, J, Udayakumar, D, Gurbani, D, Marto, J, Westover, K.
登録日2016-03-31
公開日2016-11-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.19035351 Å)
主引用文献Structural and Biochemical Analyses Reveal the Mechanism of Glutathione S-Transferase Pi 1 Inhibition by the Anti-cancer Compound Piperlongumine.
J. Biol. Chem., 292, 2017
8PCM
DownloadVisualize
BU of 8pcm by Molmil
Structure of serine-beta-lactamase CTX-M-14 following the time-resolved active site binding of boric acid and subsequent glycerol-boric acid-ester formation, 80 ms
分子名称: BORATE ION, Beta-lactamase, SULFATE ION, ...
著者Prester, A, Perbandt, M, Galchenkova, M, Oberthuer, D, Yefanov, O, Hinrichs, W, Rohde, H, Betzel, C.
登録日2023-06-11
公開日2024-06-26
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024
8F3W
DownloadVisualize
BU of 8f3w by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) PAPAPAP variant penicillin bound form from Enterococcus faecium
分子名称: OPEN FORM - PENICILLIN G, Penicillin binding protein 5, SULFATE ION
著者Schoenle, M.V, D'Andrea, E.D, Choy, M.S, Peti, W, Page, R.
登録日2022-11-10
公開日2023-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam antibiotics
To Be Published
8F3X
DownloadVisualize
BU of 8f3x by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) Poly-Gly variant apo form from Enterococcus faecium
分子名称: Penicillin binding protein 5, SULFATE ION
著者Schoenle, M.V, D'Andrea, E.D, Choy, M.S, Peti, W, Page, R.
登録日2022-11-10
公開日2023-11-15
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam antibiotics
To Be Published
8U5G
DownloadVisualize
BU of 8u5g by Molmil
Crystal structure of the co-expressed SDS22:PP1:I3 complex
分子名称: E3 ubiquitin-protein ligase PPP1R11, FE (III) ION, PHOSPHATE ION, ...
著者Choy, M.S, Peti, W, Page, R.
登録日2023-09-12
公開日2023-12-06
最終更新日2024-01-03
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献The SDS22:PP1:I3 complex: SDS22 binding to PP1 loosens the active site metal to prime metal exchange.
J.Biol.Chem., 300, 2023
8F3Y
DownloadVisualize
BU of 8f3y by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) Poly-Gly variant penicillin bound form from Enterococcus faecium
分子名称: OPEN FORM - PENICILLIN G, Penicillin binding protein 5, SULFATE ION
著者Schoenle, M.V, D'Andrea, E.D, Choy, M.S, Peti, W, Page, R.
登録日2022-11-10
公開日2023-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam antibiotics
To Be Published
8EY3
DownloadVisualize
BU of 8ey3 by Molmil
Contact-dependent growth inhibition (CDI) immunity protein from E. coli O32:H37
分子名称: Cys_rich_CPCC domain-containing protein, FE (III) ION, SODIUM ION
著者Michalska, K, Stols, L, Eschenfeldt, W, Goulding, C.W, Hayes, C.S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2022-10-26
公開日2023-11-08
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Contact-dependent growth inhibition (CDI) immunity protein from E. coli O32:H37
To Be Published
8PCI
DownloadVisualize
BU of 8pci by Molmil
Structure of serine-beta-lactamase CTX-M-14 following the time-resolved active site binding of boric acid, 5000 ms
分子名称: BORATE ION, Beta-lactamase, SULFATE ION
著者Prester, A, Perbandt, M, Galchenkova, M, Oberthuer, D, Yefanov, O, Hinrichs, W, Rohde, H, Betzel, C.
登録日2023-06-11
公開日2024-06-26
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024
8PCN
DownloadVisualize
BU of 8pcn by Molmil
Structure of serine-beta-lactamase CTX-M-14 following the time-resolved active site binding of boric acid and subsequent glycerol-boric acid-ester formation, 100 ms
分子名称: BORATE ION, Beta-lactamase, SULFATE ION, ...
著者Prester, A, Perbandt, M, Galchenkova, M, Oberthuer, D, Yefanov, O, Hinrichs, W, Rohde, H, Betzel, C.
登録日2023-06-11
公開日2024-06-26
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024
8F3V
DownloadVisualize
BU of 8f3v by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) PAPAPAP variant apo form from Enterococcus faecium
分子名称: Penicillin binding protein 5, SULFATE ION
著者Schoenle, M.V, D'Andrea, E.D, Choy, M.S, Peti, W, Page, R.
登録日2022-11-10
公開日2023-11-15
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam antibiotics
To Be Published
8PCP
DownloadVisualize
BU of 8pcp by Molmil
Structure of serine-beta-lactamase CTX-M-14 following the time-resolved active site binding of boric acid and subsequent glycerol-boric acid-ester formation, 250 ms
分子名称: BORATE ION, Beta-lactamase, SULFATE ION, ...
著者Prester, A, Perbandt, M, Galchenkova, M, Oberthuer, D, Yefanov, O, Hinrichs, W, Rohde, H, Betzel, C.
登録日2023-06-11
公開日2024-06-26
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024
8PCB
DownloadVisualize
BU of 8pcb by Molmil
Structure of serine-beta-lactamase CTX-M-14 following the time-resolved active site binding of boric acid, 80 ms
分子名称: BORATE ION, Beta-lactamase, SULFATE ION
著者Prester, A, Perbandt, M, Galchenkova, M, Oberthuer, D, Yefanov, O, Hinrichs, W, Rohde, H, Betzel, C.
登録日2023-06-11
公開日2024-06-26
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024
5J1W
DownloadVisualize
BU of 5j1w by Molmil
Crystal structure of human CLK1 in complex with pyrido[3,4-g]quinazoline derivative ZW31 (compound 14)
分子名称: Dual specificity protein kinase CLK1, GLYCEROL, PHOSPHATE ION, ...
著者Chaikuad, A, Esvan, Y.J, Zeinyeh, W, Boibessot, T, Nauton, L, Thery, V, Loaec, N, Meijer, L, Giraud, F, Moreau, P, Anizon, F, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
登録日2016-03-29
公開日2016-05-04
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Discovery of pyrido[3,4-g]quinazoline derivatives as CMGC family protein kinase inhibitors: Design, synthesis, inhibitory potency and X-ray co-crystal structure.
Eur.J.Med.Chem., 118, 2016
8PCC
DownloadVisualize
BU of 8pcc by Molmil
Structure of serine-beta-lactamase CTX-M-14 following the time-resolved active site binding of boric acid, 100 ms
分子名称: BORATE ION, Beta-lactamase, SULFATE ION
著者Prester, A, Perbandt, M, Galchenkova, M, Oberthuer, D, Yefanov, O, Hinrichs, W, Rohde, H, Betzel, C.
登録日2023-06-11
公開日2024-06-26
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024
5J28
DownloadVisualize
BU of 5j28 by Molmil
Ki67-PP1g (protein phosphatase 1, gamma isoform) holoenzyme complex
分子名称: Antigen KI-67, MALONATE ION, SODIUM ION, ...
著者Kumar, G.S, Peti, W, Page, R.
登録日2016-03-29
公開日2016-10-05
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Ki-67 and RepoMan mitotic phosphatases assemble via an identical, yet novel mechanism.
Elife, 5, 2016
2JB2
DownloadVisualize
BU of 2jb2 by Molmil
The structure of L-amino acid oxidase from Rhodococcus opacus in complex with L-phenylalanine.
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, L-AMINO ACID OXIDASE, PHENYLALANINE
著者Faust, A, Niefind, K, Hummel, W, Schomburg, D.
登録日2006-12-01
公開日2007-01-30
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The Structure of a Bacterial L-Amino Acid Oxidase from Rhodococcus Opacus Gives New Evidence for the Hydride Mechanism for Dehydrogenation
J.Mol.Biol., 367, 2007
5COQ
DownloadVisualize
BU of 5coq by Molmil
The effect of valine to alanine mutation on InhA enzyme crystallization pattern and substrate binding loop conformation and flexibility
分子名称: 5-HEXYL-2-(2-METHYLPHENOXY)PHENOL, Enoyl-[acyl-carrier-protein] reductase [NADH], NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Li, H.-J, Lai, C.-T, Liu, N, Yu, W, Shah, S, Bommineni, G.R, Perrone, V, Garcia-Diaz, M, Tonge, P.J, Simmerling, C.
登録日2015-07-20
公開日2015-08-05
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Rational Modulation of the Induced-Fit Conformational Change for Slow-Onset Inhibition in Mycobacterium tuberculosis InhA.
Biochemistry, 54, 2015
5CP8
DownloadVisualize
BU of 5cp8 by Molmil
The effect of isoleucine to alanine mutation on InhA enzyme crystallization pattern and substrate binding loop conformation and flexibility
分子名称: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5-HEXYL-2-(2-METHYLPHENOXY)PHENOL, ...
著者Li, H.-J, Lai, C.-T, Liu, N, Yu, W, Shah, S, Bommineni, G.R, Perrone, V, Garcia-Diaz, M, Tonge, P.J, Simmerling, C.
登録日2015-07-21
公開日2015-08-05
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Rational Modulation of the Induced-Fit Conformational Change for Slow-Onset Inhibition in Mycobacterium tuberculosis InhA.
Biochemistry, 54, 2015
8PCE
DownloadVisualize
BU of 8pce by Molmil
Structure of serine-beta-lactamase CTX-M-14 following the time-resolved active site binding of boric acid, 250 ms
分子名称: BORATE ION, Beta-lactamase, SULFATE ION
著者Prester, A, Perbandt, M, Galchenkova, M, Oberthuer, D, Yefanov, O, Hinrichs, W, Rohde, H, Betzel, C.
登録日2023-06-11
公開日2024-06-26
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024
6N9X
DownloadVisualize
BU of 6n9x by Molmil
Structure of bacteriophage T7 lagging-strand DNA polymerase (D5A/E7A) and gp4 (helicase/primase) bound to DNA including RNA/DNA hybrid, and an incoming dTTP (LagS3)
分子名称: DNA primase/helicase, DNA-directed DNA polymerase, MAGNESIUM ION, ...
著者Gao, Y, Fox, T, Val, N, Yang, W.
登録日2018-12-04
公開日2019-03-06
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structures and operating principles of the replisome.
Science, 363, 2019
8F9K
DownloadVisualize
BU of 8f9k by Molmil
TMEM106B doublet filaments extracted from MSTD neurodegenerative human brain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Transmembrane protein 106B
著者Hoq, M.R, Bharath, S.R, Jiang, W.
登録日2022-11-23
公開日2023-11-22
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cross-beta helical filaments of Tau and TMEM106B in gray and white matter of multiple system tauopathy with presenile dementia.
Acta Neuropathol, 145, 2023
8PCG
DownloadVisualize
BU of 8pcg by Molmil
Structure of serine-beta-lactamase CTX-M-14 following the time-resolved active site binding of boric acid, 2000 ms
分子名称: BORATE ION, Beta-lactamase, SULFATE ION
著者Prester, A, Perbandt, M, Galchenkova, M, Oberthuer, D, Yefanov, O, Hinrichs, W, Rohde, H, Betzel, C.
登録日2023-06-11
公開日2024-06-26
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon