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PDB: 12662 results

2D55
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Structural, physical and biological characteristics of RNA.DNA binding agent N8-actinomycin D
Descriptor: ACTINOMYCIN D, DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3')
Authors:Shinomiya, M, Chu, W, Carlson, R.G, Weaver, R.F, Takusagawa, F.
Deposit date:1995-05-01
Release date:1995-10-15
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of the 2:1 Complex between D(Gaagcttc) and the Anticancer Drug Actinomycin D.
J.Mol.Biol., 225, 1992
3Q5J
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Crystal structure of the amino-terminal domain of HSP90 from Leishmania major, LMJF33.0312:M1-K213 in the presence of 17-DMAP-geldanamycin
Descriptor: (4E,6Z,8S,9S,10E,12S,13R,14S,16R)-19-{[3-(dimethylamino)propyl]amino}-13-hydroxy-8,14-dimethoxy-4,10,12,16-tetramethyl-3,20,22-trioxo-2-azabicyclo[16.3.1]docosa-1(21),4,6,10,18-pentaen-9-yl carbamate, Heat shock protein 83-1
Authors:Wernimont, A.K, Tempel, W, Lin, Y.H, Hutchinson, A, MacKenzie, F, Fairlamb, A, Cossar, D, Zhao, Y, Schapira, M, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Ferguson, M.A.J, Hui, R, Pizarro, J.C, Hills, T, Structural Genomics Consortium (SGC)
Deposit date:2010-12-28
Release date:2011-02-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the amino-terminal domain of HSP90 from Leishmania major, LMJF33.0312:M1-K213 in the presence of 17-DMAP-geldanamycin.
To be Published
3QTB
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Structure of the universal stress protein from Archaeoglobus fulgidus in complex with dAMP
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, ACETATE ION, Uncharacterized protein
Authors:Tkaczuk, K.L, Shumilin, I.A, Chruszcz, M, Cymborowski, M, Xu, X, Di Leo, R, Savchenko, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-02-22
Release date:2011-03-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and functional insight into the universal stress protein family.
Evol Appl, 6, 2013
3QXH
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Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ADP and 8-aminocaprylic acid
Descriptor: 1,2-ETHANEDIOL, 8-aminooctanoic acid, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Porebski, P.J, Klimecka, M.M, Chruszcz, M, Murzyn, K, Minor, C, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-03-01
Release date:2011-03-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.
Febs J., 279, 2012
3QTE
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BU of 3qte by Molmil
Crystal structure of human alpha-defensin 6 (H27W mutant)
Descriptor: CHLORIDE ION, Defensin-6, GLYCEROL
Authors:Pazgier, M, Lu, W.
Deposit date:2011-02-22
Release date:2012-01-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Human alpha-defensin 6 promotes mucosal innate immunity through self-assembled peptide nanonets.
Science, 337, 2012
3QXL
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BU of 3qxl by Molmil
Crystal structure of the CDC25 Domain from Ral-specific Guanine-nucleotide Exchange Factor RalGPS1a
Descriptor: Ras-specific guanine nucleotide-releasing factor RalGPS1
Authors:Peng, W, Xu, J, Guan, X, Sun, Y, Li, X, Zhang, X.C, Rao, Z.
Deposit date:2011-03-02
Release date:2011-05-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.237 Å)
Cite:Structural study of the Cdc25 domain from Ral-specific guanine-nucleotide exchange factor RalGPS1a.
Protein Cell, 2, 2011
3QXS
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BU of 3qxs by Molmil
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ANP
Descriptor: 1,2-ETHANEDIOL, Dethiobiotin synthetase, MAGNESIUM ION, ...
Authors:Klimecka, M.M, Porebski, P.J, Chruszcz, M, Jablonska, K, Murzyn, K, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-03-02
Release date:2011-03-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.
Febs J., 279, 2012
3QXC
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Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ATP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Porebski, P.J, Klimecka, M.M, Chruszcz, M, Murzyn, K, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-03-01
Release date:2011-03-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.
Febs J., 279, 2012
3QY2
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BU of 3qy2 by Molmil
Crystal structure of the P93A monomer mutant of S. cerevisiae Cks1
Descriptor: CITRATE ANION, Cyclin-dependent kinases regulatory subunit
Authors:Balog, E.R.M, Saetern, O.C, Finch, W, Hoeft, C.O, Thai, V, Harvey, S.L, Kellogg, D.K, Rubin, S.M.
Deposit date:2011-03-02
Release date:2011-06-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:The structure of a monomeric mutant cks protein reveals multiple functions for a conserved hinge-region proline.
J.Mol.Biol., 411, 2011
3RU2
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Crystal structure of tm0922, a fusion of a domain of unknown function and ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Thermotoga maritima soaked with NADPH.
Descriptor: BETA-6-HYDROXY-1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, POTASSIUM ION, ...
Authors:Shumilin, I.A, Cymborowski, M, Lesley, S.A, Minor, W.
Deposit date:2011-05-04
Release date:2011-07-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification of unknown protein function using metabolite cocktail screening.
Structure, 20, 2012
3RVU
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BU of 3rvu by Molmil
Structure of 4C1 Fab in C2221 space group
Descriptor: 4C1 Fab - heavy chain, 4C1 Fab - light chain
Authors:Chruszcz, M, Vailes, L.D, Chapman, M.D, Pomes, A, Minor, W.
Deposit date:2011-05-06
Release date:2012-01-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular determinants for antibody binding on group 1 house dust mite allergens.
J.Biol.Chem., 287, 2012
3RUF
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Alternative analogs as viable substrates of UDP-hexose 4-epimerases
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, URIDINE-5'-DIPHOSPHATE, ...
Authors:Bhatt, V.S, Guan, W, Wang, P.G.
Deposit date:2011-05-05
Release date:2011-05-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Alternative analogs as viable substrates of UDP-hexose 4-epimerases
TO BE PUBLISHED
3RZJ
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BU of 3rzj by Molmil
Duplex Interrogation by a Direct DNA Repair Protein in the Search of Damage
Descriptor: 2-OXOGLUTARIC ACID, 5'-D(*CP*TP*GP*TP*CP*TP*(ME6)P*AP*CP*TP*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*AP*GP*TP*GP*AP*GP*AP*CP*A)-3', ...
Authors:Yi, C, Chen, B, Qi, B, Zhang, W, Jia, G, Zhang, L, Li, C, Dinner, A, Yang, C, He, C.
Deposit date:2011-05-11
Release date:2012-06-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Duplex interrogation by a direct DNA repair protein in search of base damage
Nat.Struct.Mol.Biol., 19, 2012
3S7I
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BU of 3s7i by Molmil
Crystal structure of Ara h 1
Descriptor: Allergen Ara h 1, clone P41B, CHLORIDE ION
Authors:Chruszcz, M, Maleki, S.J, Solberg, R, Minor, W.
Deposit date:2011-05-26
Release date:2011-09-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural and Immunologic Characterization of Ara h 1, a Major Peanut Allergen.
J.Biol.Chem., 286, 2011
3S4A
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BU of 3s4a by Molmil
Cellobiose phosphorylase from Cellulomonas uda in complex with cellobiose
Descriptor: Cellobiose phosphorylase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Van Hoorebeke, A, Stout, J, Soetaert, W, Van Beeumen, J, Desmet, T, Savvides, S.
Deposit date:2011-05-19
Release date:2012-06-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Cellobiose phosphorylase: reconstructing the structural itinerary along the catalytic pathway
To be Published
3RGX
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BU of 3rgx by Molmil
Structural insight into brassinosteroid perception by BRI1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Chai, J, Han, Z, She, J, Wang, J, Cheng, W, Wang, J.
Deposit date:2011-04-11
Release date:2011-06-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural insight into brassinosteroid perception by BRI1.
Nature, 474, 2011
3RBQ
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BU of 3rbq by Molmil
Co-crystal structure of human UNC119 (retina gene 4) and an N-terminal Transducin-alpha mimicking peptide
Descriptor: Guanine nucleotide-binding protein G(t) subunit alpha-1, Protein unc-119 homolog A
Authors:Constantine, R, Whitby, F.G, Hill, C.P, Baehr, W.
Deposit date:2011-03-29
Release date:2011-06-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:UNC119 is required for G protein trafficking in sensory neurons.
Nat.Neurosci., 14, 2011
3RPH
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BU of 3rph by Molmil
Crystal Structure of ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Bacillus subtilis co-crystallized with ATP/Mg2+.
Descriptor: ADENOSINE MONOPHOSPHATE, ADP/ATP-dependent NAD(P)H-hydrate dehydratase, MAGNESIUM ION, ...
Authors:Shumilin, I.A, Cymborowski, M, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-04-26
Release date:2011-07-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Identification of unknown protein function using metabolite cocktail screening.
Structure, 20, 2012
3ROE
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BU of 3roe by Molmil
Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Thymidine
Descriptor: Apolipoprotein A-I-binding protein, THYMIDINE
Authors:Shumilin, I.A, Jha, K.N, Cymborowski, M, Herr, J.C, Minor, W.
Deposit date:2011-04-25
Release date:2012-07-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Identification of unknown protein function using metabolite cocktail screening.
Structure, 20, 2012
3RQX
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Crystal Structure of ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Bacillus subtilis in complex with P1,P4-Di(adenosine-5') tetraphosphate
Descriptor: ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE, BIS(ADENOSINE)-5'-TETRAPHOSPHATE, CHLORIDE ION, ...
Authors:Shumilin, I.A, Cymborowski, M, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-04-28
Release date:2011-07-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Identification of unknown protein function using metabolite cocktail screening.
Structure, 20, 2012
3QZU
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BU of 3qzu by Molmil
Crystal structure of Bacillus subtilis Lipase A 7-fold mutant; the outcome of directed evolution towards thermostability
Descriptor: CHLORIDE ION, GLYCEROL, Lipase estA, ...
Authors:Pijning, T, Augustyniak, W, Reetz, M.T, Dijkstra, B.W.
Deposit date:2011-03-07
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Biophysical characterization of mutants of Bacillus subtilis lipase evolved for thermostability: Factors contributing to increased activity retention.
Protein Sci., 21, 2012
3RRB
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BU of 3rrb by Molmil
Crystal structure of tm0922, a fusion of a domain of unknown function and ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Thermotoga maritima in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Bifunctional NAD(P)H-hydrate repair enzyme Nnr, POTASSIUM ION, ...
Authors:Shumilin, I.A, Cymborowski, M, Lesley, S.A, Minor, W.
Deposit date:2011-04-29
Release date:2011-07-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of unknown protein function using metabolite cocktail screening.
Structure, 20, 2012
3R75
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BU of 3r75 by Molmil
Crystal structure of 2-amino-2-desoxyisochorismate synthase (ADIC) synthase PhzE from Burkholderia lata 383 in complex with benzoate, pyruvate, glutamine and contaminating Zn2+
Descriptor: Anthranilate/para-aminobenzoate synthases component I, BENZOIC ACID, MAGNESIUM ION, ...
Authors:Li, Q.A, Mavrodi, D.V, Thomashow, L.S, Roessle, M, Blankenfeldt, W.
Deposit date:2011-03-22
Release date:2011-03-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ligand Binding Induces an Ammonia Channel in 2-Amino-2-desoxyisochorismate (ADIC) Synthase PhzE.
J.Biol.Chem., 286, 2011
3ROX
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BU of 3rox by Molmil
Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Theophylline
Descriptor: Apolipoprotein A-I-binding protein, SULFATE ION, THEOPHYLLINE
Authors:Shumilin, I.A, Jha, K.N, Cymborowski, M, Herr, J.C, Minor, W.
Deposit date:2011-04-26
Release date:2012-07-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of unknown protein function using metabolite cocktail screening.
Structure, 20, 2012
3RQ5
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Crystal Structure of ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Bacillus subtilis co-crystallized with ATP/Mg2+ and soaked with CoA
Descriptor: ADP/ATP-dependent NAD(P)H-hydrate dehydratase, COENZYME A, GLYCEROL
Authors:Shumilin, I.A, Cymborowski, M, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-04-27
Release date:2011-07-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Identification of unknown protein function using metabolite cocktail screening.
Structure, 20, 2012

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