Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12479 results

6FPL
DownloadVisualize
BU of 6fpl by Molmil
TETR(D) E147A MUTANT IN COMPLEX WITH TETRACYCLINE AND MAGNESIUM
Descriptor: CHLORIDE ION, MAGNESIUM ION, TETRACYCLINE, ...
Authors:Hinrichs, W, Palm, G.J, Berndt, L, Girbardt, B.
Deposit date:2018-02-11
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Thermodynamics, cooperativity and stability of the tetracycline repressor (TetR) upon tetracycline binding.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
4P9U
DownloadVisualize
BU of 4p9u by Molmil
FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with DNA
Descriptor: DNA (31-MER), Fatty acid metabolism regulator protein
Authors:Kull, F.J, Shi, W.
Deposit date:2014-04-05
Release date:2015-02-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.208 Å)
Cite:The 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand.
Nat Commun, 6, 2015
3BFC
DownloadVisualize
BU of 3bfc by Molmil
class A beta-lactamase SED-G238C complexed with imipenem
Descriptor: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid, Class A beta-lactamase Sed1
Authors:Pernot, L, Petrella, S, Sougakoff, W.
Deposit date:2007-11-21
Release date:2007-12-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Acyl-intermediate structures of the class A beta-lactamase SED-G238C
To be Published
7BP2
DownloadVisualize
BU of 7bp2 by Molmil
Structural mechanism directing nucleosome reorganization by NAP1-RELATED PROTEIN 1 (NRP1)
Descriptor: GLYCEROL, Histone H2A.6, Histone H2B.1, ...
Authors:Luo, Q, Baihui, W.
Deposit date:2020-03-21
Release date:2020-11-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:NAP1-Related Protein 1 (NRP1) has multiple interaction modes for chaperoning histones H2A-H2B.
Proc.Natl.Acad.Sci.USA, 117, 2020
2YYK
DownloadVisualize
BU of 2yyk by Molmil
Crystal structure of the mutant of HpaB (T198I, A276G, and R466H)
Descriptor: 4-hydroxyphenylacetate-3-hydroxylase, ACETIC ACID, GLYCEROL, ...
Authors:Kim, S.-H, Hisano, T, Takeda, K, Iwasaki, W, Ebihara, A, Miki, K.
Deposit date:2007-04-30
Release date:2007-09-04
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of the Oxygenase Component (HpaB) of the 4-Hydroxyphenylacetate 3-Monooxygenase from Thermus thermophilus HB8
J.Biol.Chem., 282, 2007
7BP5
DownloadVisualize
BU of 7bp5 by Molmil
Structural insights into nucleosome reorganization by NAP1-RELATED PROTEIN 1 (NRP1)
Descriptor: ASN-ASP-PRO-ASP-TYR, GLYCEROL, Histone H2A.6, ...
Authors:Luo, Q, Baihui, W.
Deposit date:2020-03-21
Release date:2020-11-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:NAP1-Related Protein 1 (NRP1) has multiple interaction modes for chaperoning histones H2A-H2B.
Proc.Natl.Acad.Sci.USA, 117, 2020
6FPM
DownloadVisualize
BU of 6fpm by Molmil
TetR(D) T103A mutant in complex with tetracycline and magnesium
Descriptor: CHLORIDE ION, MAGNESIUM ION, TETRACYCLINE, ...
Authors:Hinrichs, W, Palm, G.J, Berndt, L, Girbardt, B.
Deposit date:2018-02-11
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Thermodynamics, cooperativity and stability of the tetracycline repressor (TetR) upon tetracycline binding.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
4P96
DownloadVisualize
BU of 4p96 by Molmil
FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae
Descriptor: Fatty acid metabolism regulator protein
Authors:Shi, W, Kull, F.J.
Deposit date:2014-04-02
Release date:2015-02-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand.
Nat Commun, 6, 2015
4KK1
DownloadVisualize
BU of 4kk1 by Molmil
Crystal Structure of TSC1 core domain from S. pombe
Descriptor: Tuberous sclerosis 1 protein homolog
Authors:Sun, W, Zhu, Y, Wang, Z.Z, Zhong, Q, Gao, F, Lou, J.Z, Gong, W.M, Xu, W.Q.
Deposit date:2013-05-05
Release date:2013-07-17
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of the yeast TSC1 core domain and implications for tuberous sclerosis pathological mutations.
Nat Commun, 4, 2013
6QL4
DownloadVisualize
BU of 6ql4 by Molmil
Crystal structure of nucleotide-free Mgm1
Descriptor: 1,2-ETHANEDIOL, Putative mitochondrial dynamin protein
Authors:Faelber, K, Dietrich, L, Noel, J.K, Wollweber, F, Pfitzner, A.-K, Muehleip, A, Sanchez, R, Kudryashev, M, Chiaruttin, N, Lilie, H, Schlegel, J, Rosenbaum, E, Hessenberger, M, Matthaeus, C, Noe, F, Roux, A, vanderLaan, M, Kuehlbrandt, W, Daumke, O.
Deposit date:2019-01-31
Release date:2019-07-03
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1.
Nature, 571, 2019
4KK0
DownloadVisualize
BU of 4kk0 by Molmil
Crystal Structure of TSC1 core domain from S. pombe
Descriptor: Tuberous sclerosis 1 protein homolog
Authors:Sun, W, Zhu, Y, Wang, Z.Z, Zhong, Q, Gao, F, Lou, J.Z, Gong, W.M, Xu, W.Q.
Deposit date:2013-05-05
Release date:2013-07-17
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the yeast TSC1 core domain and implications for tuberous sclerosis pathological mutations.
Nat Commun, 4, 2013
6PWX
DownloadVisualize
BU of 6pwx by Molmil
Cryo-EM structure of RbBP5 bound to the nucleosome
Descriptor: DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Park, S.H, Ayoub, A, Lee, Y.T, Xu, J, Zhang, W, Zhang, B, Zhang, Y, Cianfrocco, M.A, Su, M, Dou, Y, Cho, U.
Deposit date:2019-07-23
Release date:2019-12-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-EM structure of the human MLL1 core complex bound to the nucleosome.
Nat Commun, 10, 2019
1LNL
DownloadVisualize
BU of 1lnl by Molmil
Structure of deoxygenated hemocyanin from Rapana thomasiana
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, hemocyanin
Authors:Perbandt, M, Guthoehrlein, E.W, Rypniewski, W, Idakieva, K, Stoeva, S, Voelter, W, Genov, N, Betzel, C.
Deposit date:2002-05-03
Release date:2003-06-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structure of a functional unit from the wall of a gastropod hemocyanin offers a possible mechanism for cooperativity
Biochemistry, 42, 2003
3NV5
DownloadVisualize
BU of 3nv5 by Molmil
Crystal Structure of Cytochrome P450 CYP101D2
Descriptor: Cytochrome P450, DI(HYDROXYETHYL)ETHER, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yang, W, Bell, S.G, Wang, H, Zhou, W.H, Bartlam, M, Wong, L.L, Rao, Z.
Deposit date:2010-07-08
Release date:2010-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:The structure of CYP101D2 unveils a potential path for substrate entry into the active site
Biochem.J., 433, 2011
1L8Z
DownloadVisualize
BU of 1l8z by Molmil
Solution structure of HMG box 5 in human upstream binding factor
Descriptor: upstream binding factor 1
Authors:Yang, W, Xu, Y, Wu, J, Zeng, W, Shi, Y.
Deposit date:2002-03-22
Release date:2002-06-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure and DNA binding property of the fifth HMG box domain in comparison with the first HMG box domain in human upstream binding factor
Biochemistry, 42, 2003
3BFG
DownloadVisualize
BU of 3bfg by Molmil
class A beta-lactamase SED-G238C complexed with meropenem
Descriptor: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, Class A beta-lactamase Sed1
Authors:Pernot, L, Petrella, S, Sougakoff, W.
Deposit date:2007-11-21
Release date:2007-12-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:acyl-intermediate structures of the class A beta-lactamase SED-G238C
To be Published
4OVO
DownloadVisualize
BU of 4ovo by Molmil
REFINED X-RAY CRYSTAL STRUCTURES OF THE REACTIVE SITE MODIFIED OVOMUCOID INHIBITOR THIRD DOMAINS FROM SILVER PHEASANT (OMSVP3(ASTERISK)) AND FROM JAPANESE QUAIL (OMJPQ3(ASTERISK))
Descriptor: OVOMUCOID THIRD DOMAIN CLEAVED RDI
Authors:Musil, D, Bode, W.
Deposit date:1991-05-13
Release date:1993-01-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Refined X-ray crystal structures of the reactive site modified ovomucoid inhibitor third domains from silver pheasant (OMSVP3*) and from Japanese quail (OMJPQ3*).
J.Mol.Biol., 220, 1991
3BFE
DownloadVisualize
BU of 3bfe by Molmil
Crystal Structure of the Class A beta-lactamase SED-1 from Citrobacter sedlakii
Descriptor: Class A beta-lactamase Sed1, THIOCYANATE ION
Authors:Pernot, L, Petrella, S, Sougakoff, W.
Deposit date:2007-11-21
Release date:2007-12-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:acyl-intermediate structures of the class A beta-lactamase SED-G238C
To be Published
2PMF
DownloadVisualize
BU of 2pmf by Molmil
The crystal structure of a human glycyl-tRNA synthetase mutant
Descriptor: CHLORIDE ION, GLYCEROL, Glycyl-tRNA synthetase
Authors:Xie, W.
Deposit date:2007-04-21
Release date:2007-05-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Long-range structural effects of a Charcot-Marie- Tooth disease-causing mutation in human glycyl-tRNA synthetase.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3BFD
DownloadVisualize
BU of 3bfd by Molmil
Crystal Structure of the Class A beta-lactamase SED-G238C mutant from Citrobacter sedlakii
Descriptor: CACODYLATE ION, Class A beta-lactamase Sed1
Authors:Pernot, L, Petrella, S, Sougakoff, W.
Deposit date:2007-11-21
Release date:2007-12-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:acyl-intermediate structures of the class A beta-lactamase SED-G238C
To be Published
6GMS
DownloadVisualize
BU of 6gms by Molmil
Solution NMR structure of the major type IV pilin PpdD from enterohemorrhagic Escherichia coli (EHEC)
Descriptor: Prepilin peptidase-dependent protein D
Authors:Amorim, G.C, Bardiaux, B, Luna-Rico, A, Zeng, W, Guilvout, I, Egelman, E, Nilges, M, Francetic, O, Izadi-Pruneyre, N.
Deposit date:2018-05-28
Release date:2019-05-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and Assembly of the Enterohemorrhagic Escherichia coli Type 4 Pilus.
Structure, 27, 2019
3BMP
DownloadVisualize
BU of 3bmp by Molmil
HUMAN BONE MORPHOGENETIC PROTEIN-2 (BMP-2)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PROTEIN (BONE MORPHOGENETIC PROTEIN 2 (BMP-2))
Authors:Scheufler, C, Sebald, W, Huelsmeyer, M.
Deposit date:1999-03-12
Release date:2000-03-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human bone morphogenetic protein-2 at 2.7 A resolution.
J.Mol.Biol., 287, 1999
6FKI
DownloadVisualize
BU of 6fki by Molmil
Chloroplast F1Fo conformation 3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ...
Authors:Hahn, A, Vonck, J, Mills, D.J, Meier, T, Kuehlbrandt, W.
Deposit date:2018-01-24
Release date:2018-05-23
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structure, mechanism, and regulation of the chloroplast ATP synthase.
Science, 360, 2018
3BO8
DownloadVisualize
BU of 3bo8 by Molmil
The High Resolution Crystal Structure of HLA-A1 Complexed with the MAGE-A1 Peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Kumar, P, Vahedi-Faridi, A, Saenger, W, Ziegler, A, Uchanska-Ziegler, B.
Deposit date:2007-12-17
Release date:2008-12-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Conformational changes within the HLA-A1:MAGE-A1 complex induced by binding of a recombinant antibody fragment with TCR-like specificity
Protein Sci., 18, 2009
1LGF
DownloadVisualize
BU of 1lgf by Molmil
Crystal structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction During Vancomycin Biosynthesis
Descriptor: P450 monooxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Pylypenko, O, Zerbe, K, Vitali, F, Zhang, W, Vrijbloed, J.W, Robinson, J.A, Schlichting, I.
Deposit date:2002-04-15
Release date:2002-12-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction during Vancomycin Biosynthesis.
J.Biol.Chem., 277, 2002

222415

数据于2024-07-10公开中

PDB statisticsPDBj update infoContact PDBjnumon