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PDB: 12479 results

6NHW
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Structure of the transmembrane domain of the Death Receptor 5 - Dimer of Trimer
Descriptor: Tumor necrosis factor receptor superfamily member 10B
Authors:Chou, J.J, Pan, L, Fu, Q, Zhao, L, Chen, W, Piai, A, Fu, T, Wu, H.
Deposit date:2018-12-24
Release date:2019-02-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Higher-Order Clustering of the Transmembrane Anchor of DR5 Drives Signaling.
Cell, 176, 2019
8EFE
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Human beta-cardiac myosin II bound to ADP-MG2+ and the associated essential light chain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta-cardiac myosin II, MAGNESIUM ION, ...
Authors:Doran, M.H, Lehman, W, Rynkiewicz, M.J.
Deposit date:2022-09-08
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Conformational changes linked to ADP release from human cardiac myosin bound to actin-tropomyosin.
J.Gen.Physiol., 155, 2023
6NHY
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Structure of the transmembrane domain of the Death Receptor 5 mutant (G217Y) - Trimer Only
Descriptor: Tumor necrosis factor receptor superfamily member 10B
Authors:Chou, J.J, Pan, L, Zhao, L, Chen, W, Piai, A, Fu, T, Wu, H, Liu, Z.
Deposit date:2018-12-24
Release date:2019-02-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Higher-Order Clustering of the Transmembrane Anchor of DR5 Drives Signaling.
Cell, 176, 2019
8EFD
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Human cardiac myosin II and associated essential light chain in the rigor conformation
Descriptor: Beta-cardiac myosin II, Myosin light chain 1/3, skeletal muscle isoform
Authors:Doran, M.H, Lehman, W, Rynkiewicz, M.J.
Deposit date:2022-09-08
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Conformational changes linked to ADP release from human cardiac myosin bound to actin-tropomyosin.
J.Gen.Physiol., 155, 2023
8EFH
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Helical reconstruction of the human cardiac actin-tropomyosin-myosin complex in complex with ADP-Mg2+
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha cardiac muscle 1, ...
Authors:Doran, M.H, Lehman, W, Rynkiewicz, M.J.
Deposit date:2022-09-08
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Conformational changes linked to ADP release from human cardiac myosin bound to actin-tropomyosin.
J.Gen.Physiol., 155, 2023
8DWI
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BU of 8dwi by Molmil
Molecular Mechanism of Sialic Acid Transport Mediated by Sialin
Descriptor: Sialin
Authors:Hu, W, Zheng, H.
Deposit date:2022-08-01
Release date:2023-01-25
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The molecular mechanism of sialic acid transport mediated by Sialin.
Sci Adv, 9, 2023
8DOL
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BU of 8dol by Molmil
Mechanism of regulation of the Helicobacter pylori Cagbeta ATPase by CagZ
Descriptor: Cag pathogenicity island protein (Cag5), DI(HYDROXYETHYL)ETHER, SULFATE ION
Authors:Wu, X, Zhao, Y, Yang, W, Sun, L, Ye, X, Jiang, M, Wang, Q, Wang, Q, Zhang, X, Wu, Y.
Deposit date:2022-07-13
Release date:2023-02-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanism of regulation of the Helicobacter pylori Cag beta ATPase by CagZ.
Nat Commun, 14, 2023
8DWL
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Inhibitor-3:PP1 coexpressed complex
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase PPP1R11, Serine/threonine-protein phosphatase PP1-alpha catalytic subunit, ...
Authors:Choy, M.S, Srivastava, G, Page, R, Peti, W.
Deposit date:2022-08-01
Release date:2023-02-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibitor-3 inhibits Protein Phosphatase 1 via a metal binding dynamic protein-protein interaction.
Nat Commun, 14, 2023
8DWK
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Inhibitor-3:PP1 reconstituted complex
Descriptor: E3 ubiquitin-protein ligase PPP1R11, MANGANESE (II) ION, Serine/threonine-protein phosphatase PP1-alpha catalytic subunit
Authors:Choy, M.S, Srivastava, G, Page, R, Peti, W.
Deposit date:2022-08-01
Release date:2023-02-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Inhibitor-3 inhibits Protein Phosphatase 1 via a metal binding dynamic protein-protein interaction.
Nat Commun, 14, 2023
7Y3I
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BU of 7y3i by Molmil
Structure of DNA bound SALL4
Descriptor: DNA (12-mer), Sal-like protein 4, ZINC ION
Authors:Ru, W, Xu, C.
Deposit date:2022-06-10
Release date:2022-10-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif.
J.Biol.Chem., 298, 2022
7Y3L
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Structure of SALL3 ZFC4 bound with 12 bp AT-rich dsDNA
Descriptor: DNA (12-mer), Sal-like protein 3, ZINC ION
Authors:Ru, W, Xu, C.
Deposit date:2022-06-11
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif.
J.Biol.Chem., 298, 2022
7Y3M
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BU of 7y3m by Molmil
Structure of SALL4 ZFC1 bound with 16 bp AT-rich dsDNA
Descriptor: DNA (16-mer), Sal-like protein 4, ZINC ION
Authors:Ru, W, Xu, C.
Deposit date:2022-06-11
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.723 Å)
Cite:Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif.
J.Biol.Chem., 298, 2022
7Y3K
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BU of 7y3k by Molmil
Structure of SALL4 ZFC4 bound with 16 bp AT-rich dsDNA
Descriptor: DNA (16-mer), Sal-like protein 4, ZINC ION
Authors:Ru, W, Xu, C.
Deposit date:2022-06-11
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif.
J.Biol.Chem., 298, 2022
8E3N
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BU of 8e3n by Molmil
Crystal structure of pregnane X receptor ligand binding domain complexed with rifamycin S
Descriptor: Nuclear receptor subfamily 1 group I member 2, Rifamycin S
Authors:Huber, A.D, Poudel, S, Seetharaman, J, Miller, D.J, Lin, W, Chen, T.
Deposit date:2022-08-17
Release date:2023-03-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure-guided approach to modulate small molecule binding to a promiscuous ligand-activated protein.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EBU
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BU of 8ebu by Molmil
XPC release from Core7-XPA-DNA (Cy5)
Descriptor: DNA repair protein complementing XP-A cells, DNA repair protein complementing XP-C cells, DNA1, ...
Authors:Kim, J, Yang, W.
Deposit date:2022-08-31
Release date:2023-04-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Lesion recognition by XPC, TFIIH and XPA in DNA excision repair.
Nature, 617, 2023
8EBS
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BU of 8ebs by Molmil
Initial DNA-lesion (Cy5) binding by XPC and TFIIH
Descriptor: CALCIUM ION, Centrin-2, DNA, ...
Authors:Kim, J, Yang, W.
Deposit date:2022-08-31
Release date:2023-04-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Lesion recognition by XPC, TFIIH and XPA in DNA excision repair.
Nature, 617, 2023
8EBT
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BU of 8ebt by Molmil
XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (Cy5)
Descriptor: CALCIUM ION, Centrin-2, DNA, ...
Authors:Kim, J, Yang, W.
Deposit date:2022-08-31
Release date:2023-04-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Lesion recognition by XPC, TFIIH and XPA in DNA excision repair.
Nature, 617, 2023
8EBY
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BU of 8eby by Molmil
XPC release from Core7-XPA-DNA (AP)
Descriptor: DNA, DNA repair protein complementing XP-A cells, DNA repair protein complementing XP-C cells, ...
Authors:Kim, J, Yang, W.
Deposit date:2022-08-31
Release date:2023-04-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Lesion recognition by XPC, TFIIH and XPA in DNA excision repair.
Nature, 617, 2023
8EBV
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BU of 8ebv by Molmil
Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1
Descriptor: CALCIUM ION, Centrin-2, DNA, ...
Authors:Kim, J, Yang, W.
Deposit date:2022-08-31
Release date:2023-04-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Lesion recognition by XPC, TFIIH and XPA in DNA excision repair.
Nature, 617, 2023
8EBW
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BU of 8ebw by Molmil
Initial DNA-lesion (AP) binding by XPC and TFIIH complex2
Descriptor: CALCIUM ION, Centrin-2, DNA, ...
Authors:Kim, J, Yang, W.
Deposit date:2022-08-31
Release date:2023-04-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Lesion recognition by XPC, TFIIH and XPA in DNA excision repair.
Nature, 617, 2023
8EBX
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BU of 8ebx by Molmil
XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (AP)
Descriptor: CALCIUM ION, Centrin-2, DNA, ...
Authors:Kim, J, Yang, W.
Deposit date:2022-08-31
Release date:2023-04-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Lesion recognition by XPC, TFIIH and XPA in DNA excision repair.
Nature, 617, 2023
8E3S
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BU of 8e3s by Molmil
CryoEM structure of yeast Arginyltransferase 1 (ATE1)
Descriptor: Arginyl-tRNA--protein transferase 1, ZINC ION
Authors:Huang, W, Zhang, Y, Taylor, D.J.
Deposit date:2022-08-17
Release date:2023-04-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The structural basis of tRNA recognition by arginyl-tRNA-protein transferase.
Nat Commun, 14, 2023
8EC0
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BU of 8ec0 by Molmil
III2IV respiratory supercomplex from Saccharomyces cerevisiae cardiolipin-lacking mutant
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL, ...
Authors:Hryc, C.F, Mileykovskaya, E, Baker, M, Dowhan, W.
Deposit date:2022-08-31
Release date:2023-05-24
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into cardiolipin replacement by phosphatidylglycerol in a cardiolipin-lacking yeast respiratory supercomplex.
Nat Commun, 14, 2023
8E7S
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BU of 8e7s by Molmil
III2IV2 respiratory supercomplex from Saccharomyces cerevisiae with 4 bound UQ6
Descriptor: (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate, 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL, ...
Authors:Hryc, C.F, Mileykovskaya, E, Baker, M, Dowhan, W.
Deposit date:2022-08-24
Release date:2023-05-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into cardiolipin replacement by phosphatidylglycerol in a cardiolipin-lacking yeast respiratory supercomplex.
Nat Commun, 14, 2023
6UIW
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BU of 6uiw by Molmil
Cryo-EM structure of human CALHM2 in a ruthenium red-bound inhibited state
Descriptor: Calcium homeostasis modulator protein 2, ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)
Authors:Lu, W, Du, J, Choi, W.
Deposit date:2019-10-01
Release date:2019-11-27
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:The structures and gating mechanism of human calcium homeostasis modulator 2.
Nature, 576, 2019

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