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PDB: 12479 件

4Q94
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human RPRD1B CID in complex with a RPB1-CTD derived Ser2 phosphorylated peptide
分子名称: Regulation of nuclear pre-mRNA domain-containing protein 1B, SULFATE ION, UNKNOWN ATOM OR ION, ...
著者Ni, Z, Xu, C, Tempel, W, El Bakkouri, M, Loppnau, P, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Greenblatt, J.F, Structural Genomics Consortium (SGC)
登録日2014-04-29
公開日2014-06-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation.
Nat.Struct.Mol.Biol., 21, 2014
1RTS
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THYMIDYLATE SYNTHASE FROM RAT IN TERNARY COMPLEX WITH DUMP AND TOMUDEX
分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE, TOMUDEX
著者Sotelo-Mundo, R.R, Ciesla, J, Dzik, J.M, Rode, W, Maley, F, Maley, G, Hardy, L.W, Montfort, W.R.
登録日1998-06-19
公開日1999-02-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structures of rat thymidylate synthase inhibited by Tomudex, a potent anticancer drug.
Biochemistry, 38, 1999
1R8G
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Structure and function of YbdK
分子名称: Hypothetical protein ybdK
著者Lehmann, C, Doseeva, V, Pullalarevu, S, Krajewski, W, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
登録日2003-10-24
公開日2004-08-17
最終更新日2021-07-28
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献YbdK is a carboxylate-amine ligase with a gamma-glutamyl:Cysteine ligase activity: crystal structure and enzymatic assays
PROTEINS: STRUCT.,FUNCT.,GENET., 56, 2004
1RQ6
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Solution structure of ribosomal protein S17E from Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target TT802 / Ontario Center for Structural Proteomics Target Mth0803
分子名称: 30S ribosomal protein S17e
著者Wu, B, Yee, A, Huang, Y.J, Ramelot, T.A, Semesi, A, Jung, J.W, Edward, A, Lee, W, Kennedy, M.A, Montelione, G.T, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
登録日2003-12-04
公開日2004-12-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The solution structure of ribosomal protein S17E from Methanobacterium thermoautotrophicum: a structural homolog of the FF domain.
Protein Sci., 17, 2008
2M83
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Solution structure of the carbohydrate binding module of the muscle glycogen-targeting subunit of Protein Phosphatase-1
分子名称: Protein phosphatase 1 regulatory subunit 3A
著者Koveal, D, Page, R, Peti, W.
登録日2013-05-03
公開日2014-05-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Molecular basis for Protein Phosphatase-1 regulation by the muscle glycogen-targeting subunit GM
To be Published
3LWP
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Structure of H/ACA RNP bound to a substrate RNA containing 5BrdU
分子名称: 5'-R(*GP*AP*GP*CP*GP*(BRU)P*GP*CP*GP*GP*UP*UP*U)-3, 50S ribosomal protein L7Ae, H/ACA RNA, ...
著者Zhou, J, Liang, B, Lv, C, Yang, W, Li, H.
登録日2010-02-24
公開日2010-07-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study.
J.Mol.Biol., 401, 2010
4QE7
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Open MthK pore structure soaked in 10 mM Ba2+/100 mM Na+
分子名称: BARIUM ION, Calcium-gated potassium channel MthK
著者Guo, R, Zeng, W, Cui, H, Chen, L, Ye, S.
登録日2014-05-15
公開日2014-07-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Ionic interactions of Ba2+ blockades in the MthK K+ channel
J.Gen.Physiol., 144, 2014
3LWO
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Structure of H/ACA RNP bound to a substrate RNA containing 5BrU
分子名称: 5'-R(*GP*AP*GP*CP*GP*(5BU)P*GP*CP*GP*GP*UP*UP*U)-3', 50S ribosomal protein L7Ae, H/ACA RNA, ...
著者Zhou, J, Liang, B, Lv, C, Yang, W, Li, H.
登録日2010-02-24
公開日2010-07-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.855 Å)
主引用文献Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study.
J.Mol.Biol., 401, 2010
1U7S
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Crystal structure of Native Sperm Whale myoglobin from low ionic strength enviroment (Form 1)
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Zhang, W, Phillips Jr, G.N.
登録日2004-08-04
公開日2005-07-19
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments.
Proteins, 70, 2008
2M7F
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The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Integrins Recognitions
分子名称: Zinc metalloproteinase/disintegrin
著者Chuang, W, Chang, Y.
登録日2013-04-22
公開日2013-05-22
実験手法SOLUTION NMR
主引用文献The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Recognitions of Integrins
To be Published
1TO0
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X-ray structure of Northeast Structural Genomics target protein sr145 from Bacillus subtilis
分子名称: Hypothetical UPF0247 protein yyda
著者Kuzin, A.P, Edstrom, W, Vorobiev, S.M, Shastry, R, Ma, L.-C, Xiao, R, Acton, T, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2004-06-11
公開日2004-07-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献X-ray structure of Northeast Structural Genomics target protein sr145 from Bacillus subtilis
To be Published
3LTU
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5-SeMe-dU containing DNA 8mer
分子名称: 5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3'
著者Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
登録日2010-02-16
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
4PZ1
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Crystal structure of a sHIP (UniProt Id: Q99XU0) mutant from Streptococcus pyogenes
分子名称: CALCIUM ION, CHLORIDE ION, sHIP
著者Wisniewska, M, Happonen, L, Frick, I.-M, Bjorck, L, Streicher, W, Malmstrom, J, Wikstrom, M.
登録日2014-03-28
公開日2015-03-11
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Functional and structural properties of a novel protein and virulence factor (Protein sHIP) in Streptococcus pyogenes.
J.Biol.Chem., 289, 2014
4Q0N
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Crystal Structure of the fifth bromodomain of Human Poly-bromodomain containing protein 1 (PB1) in complex with a hydroxyphenyl-propenone ligand
分子名称: (2E)-1-(2-hydroxyphenyl)-3-(2,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridin-6-yl)prop-2-en-1-one, 1,2-ETHANEDIOL, Protein polybromo-1
著者Filippakopoulos, P, Picaud, S, Felletar, I, Martin, S, Monteiro, O, Fedorov, O, Chaikuad, A, Yue, W, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
登録日2014-04-02
公開日2014-05-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Crystal Structure of the fifth bromodomain of Human Poly-bromodomain containing protein 1 (PB1) in complex with a hydroxyphenyl-propenone ligand
To be Published
1TZA
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X-ray structure of Northeast Structural Genomics Consortium target SoR45
分子名称: CACODYLATE ION, apaG protein
著者Kuzin, A.P, Vorobiev, S.M, Edstrom, W, Acton, T.B, Shastry, R, Ma, L.-C, Cooper, B, Xiao, R, Montelione, G, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2004-07-09
公開日2004-07-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献X-ray structure of Northeast Structural Genomics Consortium target SoR45
To be Published
2M3W
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Protein structure determination from a set of 4D NOESY
分子名称: Protein S100-A1
著者Nowakowski, M.E, Stanek, J, Ruszczynska-Bartnik, K, Ejchart, A.O, Kozminski, W.
登録日2013-01-28
公開日2014-03-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Determination of protein structure from a set of 4D NOESY performed with non uniform sampling
To be Published
1U1W
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Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79
分子名称: 3-HYDROXYANTHRANILIC ACID, ACETATE ION, GLYCEROL, ...
著者Blankenfeldt, W, Kuzin, A.P, Skarina, T, Korniyenko, Y, Tong, L, Bayer, P, Janning, P, Thomashow, L.S, Mavrodi, D.V.
登録日2004-07-16
公開日2004-11-02
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
Proc.Natl.Acad.Sci.USA, 101, 2004
2MBS
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NMR solution structure of oxidized KpDsbA
分子名称: Thiol:disulfide interchange protein
著者Kurth, F, Rimmer, K, Premkumar, L, Mohanty, B, Duprez, W, Halili, M.A, Shouldice, S.R, Heras, B, Fairlie, D.P, Scanlon, M.J, Martin, J.L.
登録日2013-08-03
公開日2013-12-11
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Comparative Sequence, Structure and Redox Analyses of Klebsiella pneumoniae DsbA Show That Anti-Virulence Target DsbA Enzymes Fall into Distinct Classes.
Plos One, 8, 2013
3LUS
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Crystal structure of a putative organic hydroperoxide resistance protein with molecule of captopril bound in one of the active sites from Vibrio cholerae O1 biovar eltor str. N16961
分子名称: L-CAPTOPRIL, Organic hydroperoxide resistance protein
著者Nocek, B, Maltseva, N, Makowska-Grzyska, M, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2010-02-18
公開日2010-04-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structure of a putative organic hydroperoxide resistance protein with molecule of captopril bound in one of the active sites from Vibrio cholerae O1 biovar eltor str. N16961
TO BE PUBLISHED
1U43
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IspF with 4-diphosphocytidyl-2c-methyl-D-erythritol 2-phosphate
分子名称: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL 2-PHOSPHATE
著者Steinbacher, S, Kaiser, J, Wungsintaweekul, J, Hecht, S, Eisenreich, W, Gerhardt, S, Bacher, A, Rohdich, F.
登録日2004-07-23
公開日2004-08-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structure of 2C-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase Involved in Mevalonate Independent Biosynthesis of Isoprenoids
J.Mol.Biol., 316, 2002
3LTR
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5-OMe-dU containing DNA 8mer
分子名称: 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3', MAGNESIUM ION
著者Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
登録日2010-02-16
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
2LYI
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Repetitive domain (RP) of aciniform spidroin 1 from Nephila antipodiana
分子名称: PROTEIN (entity)
著者Wang, S, Huang, W, Yang, D.
登録日2012-09-18
公開日2013-01-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana
J.Biomol.Nmr, 54, 2012
1U3B
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Auto-inhibition Mechanism of X11s/Mints Family Scaffold Proteins Revealed by the Closed Conformation of the Tandem PDZ Domains
分子名称: amyloid beta A4 precursor protein-binding, family A, member 1
著者Feng, W, Long, J.-F, Chan, L.-N, He, C, Fu, A, Xia, J, Ip, N.Y, Zhang, M.
登録日2004-07-21
公開日2005-07-26
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Autoinhibition of X11/Mint scaffold proteins revealed by the closed conformation of the PDZ tandem
Nat.Struct.Mol.Biol., 12, 2005
3LXX
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Crystal structure of human GTPase IMAP family member 4
分子名称: GTPase IMAP family member 4, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Shen, Y, Nedyalkova, L, Tong, Y, Tempel, W, Mackenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Andrews, D.W, Park, H, Structural Genomics Consortium (SGC)
登録日2010-02-25
公開日2010-03-09
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of human GTPase IMAP family member 4
to be published
4Q7O
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The crystal structure of an immunity protein NMB0503 from Neisseria meningitidis MC58
分子名称: BROMIDE ION, FORMIC ACID, Immunity protein
著者Tan, K, Stols, L, Eschenfeldt, W, Babnigg, G, Low, D.A, Hayes, C.S, Goulding, C.W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI)
登録日2014-04-25
公開日2014-05-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The structure of a contact-dependent growth-inhibition (CDI) immunity protein from Neisseria meningitidis MC58.
Acta Crystallogr F Struct Biol Commun, 71, 2015

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