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PDB: 12479 件

3J3X
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Independent reconstruction of Mm-cpn cryo-EM density map from half dataset in the closed state (training map)
分子名称: Chaperonin
著者DiMaio, F, Zhang, J, Chiu, W, Baker, D.
登録日2013-05-02
公開日2013-05-29
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Cryo-EM model validation using independent map reconstructions.
Protein Sci., 22, 2013
3D81
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Sir2-S-alkylamidate complex crystal structure
分子名称: NAD-dependent deacetylase, S-alkylamidate intermediate, ZINC ION
著者Hawse, W.F, Hoff, K.G, Fatkins, D, Daines, A, Zubkova, O.V, Schramm, V.L, Zheng, W, Wolberger, C.
登録日2008-05-22
公開日2008-09-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural insights into intermediate steps in the Sir2 deacetylation reaction.
Structure, 16, 2008
8A8J
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BU of 8a8j by Molmil
Complex of RecF and DNA from Thermus thermophilus.
分子名称: DNA replication and repair protein RecF, MAGNESIUM ION, Oligo1, ...
著者Nirwal, S, Czarnocki-Cieciura, M, Chaudhary, A, Zajko, W, Skowronek, K, Chamera, S, Figiel, M, Nowotny, M.
登録日2022-06-23
公開日2023-04-26
最終更新日2023-05-31
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Mechanism of RecF-RecO-RecR cooperation in bacterial homologous recombination.
Nat.Struct.Mol.Biol., 30, 2023
8A7A
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PcIDS1 in complex with Mg2+ and 3-Br-GPP
分子名称: Isoprenyl diphosphate synthase, MAGNESIUM ION, [(2Z)-3-bromanyl-7-methyl-octa-2,6-dienyl] phosphono hydrogen phosphate
著者Ecker, F, Boland, W, Groll, M.
登録日2022-06-20
公開日2023-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Metal-dependent enzyme symmetry guides the biosynthetic flux of terpene precursors.
Nat.Chem., 15, 2023
8A93
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Complex of RecF-RecR-DNA from Thermus thermophilus.
分子名称: DNA replication and repair protein RecF, MAGNESIUM ION, Oligo1, ...
著者Nirwal, S, Czarnocki-Cieciura, M, Chaudhary, A, Zajko, W, Skowronek, K, Chamera, S, Figiel, M, Nowotny, M.
登録日2022-06-27
公開日2023-04-26
最終更新日2023-05-31
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Mechanism of RecF-RecO-RecR cooperation in bacterial homologous recombination.
Nat.Struct.Mol.Biol., 30, 2023
3JA1
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Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Li, W, Liu, Z, Koripella, R.K, Langlois, R, Sanyal, S, Frank, J.
登録日2015-03-30
公開日2015-07-01
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Activation of GTP hydrolysis in mRNA-tRNA translocation by elongation factor G.
Sci Adv, 1, 2015
3JB7
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In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
分子名称: CPV RNA-dependent RNA polymerase, CYTIDINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Zhang, X, Ding, K, Yu, X.K, Chang, W, Sun, J.C, Zhou, Z.H.
登録日2015-08-03
公開日2015-10-28
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus.
Nature, 527, 2015
3K3S
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BU of 3k3s by Molmil
Crystal structure of altronate hydrolase (fragment 1-84) from Shigella Flexneri.
分子名称: ACETATE ION, Altronate hydrolase, CHLORIDE ION, ...
著者Hou, J, Chruszcz, M, Xu, X, Le, B, Zimmerman, M.D, Savchenko, A, Edwards, A.M, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
登録日2009-10-04
公開日2009-10-27
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of altronate hydrolase (fragment 1-84) from Shigella Flexneri.
To be Published
8A7L
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PcIDS1 in complex with Mg2+, GPP, and ZOL
分子名称: GERANYL DIPHOSPHATE, GLYCEROL, Isoprenyl diphosphate synthase, ...
著者Ecker, F, Boland, W, Groll, M.
登録日2022-06-21
公開日2023-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Metal-dependent enzyme symmetry guides the biosynthetic flux of terpene precursors.
Nat.Chem., 15, 2023
8A7C
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BU of 8a7c by Molmil
PcIDS1 in complex with Mg2+, IPP, and ZOL
分子名称: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, GLYCEROL, Isoprenyl diphosphate synthase, ...
著者Ecker, F, Boland, W, Groll, M.
登録日2022-06-20
公開日2023-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Metal-dependent enzyme symmetry guides the biosynthetic flux of terpene precursors.
Nat.Chem., 15, 2023
3CP8
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Crystal structure of GidA from Chlorobium tepidum
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
著者Meyer, S, Scrima, A, Versees, W, Wittinghofer, A.
登録日2008-03-31
公開日2008-06-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structures of the conserved tRNA-modifying enzyme GidA: implications for its interaction with MnmE and substrate
J.Mol.Biol., 380, 2008
8A7J
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PcIDS1 in complex with Mn2+, IPP, and ZOL
分子名称: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, GLYCEROL, Isoprenyl diphosphate synthase, ...
著者Ecker, F, Boland, W, Groll, M.
登録日2022-06-21
公開日2023-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Metal-dependent enzyme symmetry guides the biosynthetic flux of terpene precursors.
Nat.Chem., 15, 2023
8A7R
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BU of 8a7r by Molmil
PcIDS1_I420A in complex with Mg2+ and GPP
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GERANYL DIPHOSPHATE, GLYCEROL, ...
著者Ecker, F, Boland, W, Groll, M.
登録日2022-06-21
公開日2023-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Metal-dependent enzyme symmetry guides the biosynthetic flux of terpene precursors.
Nat.Chem., 15, 2023
3K57
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Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*G*TP*AP*TP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'), ...
著者Yang, W, Wang, F.
登録日2009-10-06
公開日2010-02-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structural insight into translesion synthesis by DNA Pol II
Cell(Cambridge,Mass.), 139, 2009
2IIP
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BU of 2iip by Molmil
Human Nicotinamide N-methyltransferase
分子名称: Nicotinamide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Bernstein, G, Min, J, Wu, H, Tempel, W, Zeng, H, Loppnau, P, Avvakumov, G.V, Wasney, G, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
登録日2006-09-28
公開日2006-10-10
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献The Crystal Structure of Human Nicotinamide N-methyltransferase in complex with SAH
To be Published
3CRQ
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BU of 3crq by Molmil
Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel
分子名称: DIPHOSPHATE, MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase
著者Huang, R.H, Xie, W, Zhou, C.
登録日2008-04-07
公開日2008-04-29
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel
J.Mol.Biol., 367, 2007
3JVK
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BU of 3jvk by Molmil
Crystal structure of bromodomain 1 of mouse Brd4 in complex with histone H3-K(ac)14
分子名称: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, histone H3.3 peptide
著者Vollmuth, F, Blankenfeldt, W, Geyer, M.
登録日2009-09-17
公開日2009-10-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structures of the Dual Bromodomains of the P-TEFb-activating Protein Brd4 at Atomic Resolution
J.Biol.Chem., 284, 2009
8A6Z
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BU of 8a6z by Molmil
PcIDS1 in complex with Mn2+ and IPP
分子名称: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, GLYCEROL, Isoprenyl diphosphate synthase, ...
著者Ecker, F, Boland, W, Groll, M.
登録日2022-06-20
公開日2023-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Metal-dependent enzyme symmetry guides the biosynthetic flux of terpene precursors.
Nat.Chem., 15, 2023
1N94
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Aryl Tetrahydropyridine Inhbitors of Farnesyltransferase: Glycine, Phenylalanine and Histidine Derivates
分子名称: 2-{(5-{[BUTYL-(2-CYCLOHEXYL-ETHYL)-AMINO]-METHYL}-2'-METHYL-BIPHENYL-2-CARBONYL)-AMINO]-4-METHYLSULFANYL-BUTYRIC ACID, ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID, Protein farnesyltransferase alpha subunit, ...
著者Gwaltney II, S.L, O'Connor, S.J, Nelson, L.T, Sullivan, G.M, Imade, H, Wang, W, Hasvold, L, Li, Q, Cohen, J, Gu, W.Z.
登録日2002-11-22
公開日2003-01-07
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Aryl tetrahydropyridine inhibitors of farnesyltransferase: glycine, phenylalanine and histidine derivatives.
Bioorg.Med.Chem.Lett., 13, 2003
8A73
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PcIDS1 in complex with Mn2+ and GPP
分子名称: GERANYL DIPHOSPHATE, Isoprenyl diphosphate synthase, MAGNESIUM ION, ...
著者Ecker, F, Boland, W, Groll, M.
登録日2022-06-20
公開日2023-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Metal-dependent enzyme symmetry guides the biosynthetic flux of terpene precursors.
Nat.Chem., 15, 2023
3CZW
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BU of 3czw by Molmil
X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex
分子名称: RNA (5'-R(*G*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'), SULFATE ION
著者Rypniewski, W, Adamiak, D.A, Milecki, J, Adamiak, R.W.
登録日2008-04-30
公開日2008-09-09
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Noncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex.
Rna, 14, 2008
3KLL
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BU of 3kll by Molmil
Crystal structure of Lactobacillus reuteri N-terminally truncated glucansucrase GTF180-maltose complex
分子名称: CALCIUM ION, GLYCEROL, Glucansucrase, ...
著者Vujicic-Zagar, A, Pijning, T, Kralj, S, Eeuwema, W, Dijkhuizen, L, Dijkstra, B.W.
登録日2009-11-08
公開日2010-11-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a 117 kDa glucansucrase fragment provides insight into evolution and product specificity of GH70 enzymes
Proc.Natl.Acad.Sci.USA, 107, 2010
7ZPT
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Crystal structure of MreB from Geobacillus stearothermophilus ATCC7953
分子名称: Cell shape-determining protein MreB, PENTAETHYLENE GLYCOL
著者Li de la Sierra-Gallay, I, Mao, W.
登録日2022-04-28
公開日2023-05-10
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献On the role of nucleotides and lipids in the polymerization of the actin homolog MreB from a Gram-positive bacterium.
Elife, 12, 2023
7ZPU
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Crystal structure of MreB from Geobacillus stearothermophilus ATCC7953 in complex with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell shape-determining protein MreB
著者Li de la Sierra-Gallay, I, Mao, W.
登録日2022-04-28
公開日2023-05-10
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献On the role of nucleotides and lipids in the polymerization of the actin homolog MreB from a Gram-positive bacterium.
Elife, 12, 2023
8A7B
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PcIDS1_D319N in complex with Mg2+ and 3-Br-GPP
分子名称: CARBONATE ION, GLYCEROL, Isoprenyl diphosphate synthase, ...
著者Ecker, F, Boland, W, Groll, M.
登録日2022-06-20
公開日2023-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Metal-dependent enzyme symmetry guides the biosynthetic flux of terpene precursors.
Nat.Chem., 15, 2023

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