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PDB: 12479 件

3PHD
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Crystal structure of human HDAC6 in complex with ubiquitin
分子名称: Histone deacetylase 6, Polyubiquitin, ZINC ION
著者Dong, A, Qui, W, Ravichandran, M, Schuetz, A, Loppnau, P, Li, F, Mackenzie, F, Kozieradzki, I, Ouyang, H, Structural Genomics Consortium (SGC)
登録日2010-11-03
公開日2011-02-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Protein Aggregates Are Recruited to Aggresome by Histone Deacetylase 6 via Unanchored Ubiquitin C Termini.
J.Biol.Chem., 287, 2012
1VHI
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BU of 1vhi by Molmil
EPSTEIN BARR VIRUS NUCLEAR ANTIGEN-1 DNA-BINDING DOMAIN, RESIDUES 470-607
分子名称: EPSTEIN BARR VIRUS NUCLEAR ANTIGEN-1
著者Bochkarev, A, Barwell, J, Pfuetzner, R, Furey, W, Edwards, A, Frappier, L.
登録日1996-10-05
公開日1996-12-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the DNA-binding domain of the Epstein-Barr virus origin-binding protein EBNA 1.
Cell(Cambridge,Mass.), 83, 1995
2MRB
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THREE-DIMENSIONAL STRUCTURE OF RABBIT LIVER CD-7 METALLOTHIONEIN-2A IN AQUEOUS SOLUTION DETERMINED BY NUCLEAR MAGNETIC RESONANCE
分子名称: CADMIUM ION, CD7 METALLOTHIONEIN-2A
著者Braun, W, Arseniev, A, Schultze, P, Woergoetter, E, Wagner, G, Vasak, M, Kaegi, J.H.R, Wuthrich, K.
登録日1990-05-14
公開日1991-04-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Three-dimensional structure of rabbit liver [Cd7]metallothionein-2a in aqueous solution determined by nuclear magnetic resonance.
J.Mol.Biol., 201, 1988
2MRT
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BU of 2mrt by Molmil
CONFORMATION OF CD-7 METALLOTHIONEIN-2 FROM RAT LIVER IN AQUEOUS SOLUTION DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
分子名称: CADMIUM ION, CD7 METALLOTHIONEIN-2
著者Braun, W, Schultze, P, Woergoetter, E, Wagner, G, Vasak, M, Kaegi, J.H.R, Wuthrich, K.
登録日1990-05-14
公開日1991-04-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Conformation of [Cd7]-metallothionein-2 from rat liver in aqueous solution determined by nuclear magnetic resonance spectroscopy.
J.Mol.Biol., 203, 1988
1VK1
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BU of 1vk1 by Molmil
Conserved hypothetical protein from Pyrococcus furiosus Pfu-392566-001
分子名称: Conserved hypothetical protein, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ...
著者Shah, A, Liu, Z.J, Tempel, W, Chen, L, Lee, D, Yang, H, Chang, J, Zhao, M, Ng, J, Rose, J, Brereton, P.S, Izumi, M, Jenney Jr, F.E, Poole II, F.L, Shah, C, Sugar, F.J, Adams, M.W.W, Richardson, D.C, Richardson, J.S, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-04-13
公開日2004-08-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献(NZ)CH...O contacts assist crystallization of a ParB-like nuclease.
Bmc Struct.Biol., 7, 2007
2CUL
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BU of 2cul by Molmil
Crystal structure of the GidA-related protein from Thermus thermophilus HB8
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Glucose-inhibited division protein A-related protein, probable oxidoreductase
著者Iwasaki, W, Miyatake, H, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-26
公開日2006-01-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8
Proteins, 61, 2005
2R13
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BU of 2r13 by Molmil
Crystal structure of human mitoNEET reveals a novel [2Fe-2S] cluster coordination
分子名称: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, Zinc finger CDGSH domain-containing protein 1
著者Hou, X, Liu, R, Ross, S, Smart, E.J, Zhu, H, Gong, W.
登録日2007-08-22
公開日2007-09-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic studies of human MitoNEET
J.Biol.Chem., 282, 2007
1DAG
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BU of 1dag by Molmil
DETHIOBIOTIN SYNTHETASE COMPLEXED WITH 7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID AND 5'-ADENOSYL-METHYLENE-TRIPHOSPHATE
分子名称: 7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID, DETHIOBIOTIN SYNTHETASE, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
著者Huang, W, Jia, J, Schneider, G, Lindqvist, Y.
登録日1995-05-08
公開日1996-06-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Mechanism of an ATP-dependent carboxylase, dethiobiotin synthetase, based on crystallographic studies of complexes with substrates and a reaction intermediate.
Biochemistry, 34, 1995
2QQ8
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BU of 2qq8 by Molmil
Crystal structure of the putative RabGAP domain of human TBC1 domain family member 14
分子名称: TBC1 domain family member 14, UNKNOWN ATOM OR ION
著者Tong, Y, Tempel, W, Dimov, S, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
登録日2007-07-26
公開日2007-08-07
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the putative RabGAP domain of human TBC1 domain family member 14.
To be Published
8TF7
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Apo structure of protein crystal of Tri17
分子名称: AMP-binding protein
著者Zhai, R, Zhang, W.
登録日2023-07-09
公開日2024-07-10
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献De novo biosynthesis of azide by a promiscuous N-nitrosylase
To Be Published
2QT5
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BU of 2qt5 by Molmil
Crystal Structure of GRIP1 PDZ12 in Complex with the Fras1 Peptide
分子名称: (ASN)(ASN)(LEU)(GLN)(ASP)(GLY)(THR)(GLU)(VAL), 1,2-ETHANEDIOL, ACETIC ACID, ...
著者Long, J, Wei, Z, Feng, W, Zhao, Y, Zhang, M.
登録日2007-08-01
公開日2008-06-03
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Supramodular nature of GRIP1 revealed by the structure of its PDZ12 tandem in complex with the carboxyl tail of Fras1.
J.Mol.Biol., 375, 2008
2R2D
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BU of 2r2d by Molmil
Structure of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens
分子名称: GLYCEROL, PHOSPHATE ION, ZINC ION, ...
著者Liu, D, Thomas, P.W, Momb, J, Hoang, Q, Petsko, G.A, Ringe, D, Fast, W.
登録日2007-08-24
公開日2007-10-09
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structure and specificity of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens.
Biochemistry, 46, 2007
2REO
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BU of 2reo by Molmil
Crystal structure of human sulfotransferase 1C3 (Sult1C3) in complex with PAP
分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, Putative sulfotransferase 1C3
著者Tempel, W, Pan, P, Dong, A, Loppnau, P, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
登録日2007-09-26
公開日2007-10-09
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.651 Å)
主引用文献Crystal structure of human sulfotransferase 1C3 (Sult1C3) in complex with PAP.
To be Published
2R53
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BU of 2r53 by Molmil
Crystal structure analysis of Bone Morphogenetic Protein-6 variant B2 (B2-BMP-6)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Bone morphogenetic protein 6
著者Mueller, T.D, Sebald, W.
登録日2007-09-03
公開日2008-01-15
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Type I receptor binding of bone morphogenetic protein 6 is dependent on N-glycosylation of the ligand.
Febs J., 275, 2007
2R9H
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BU of 2r9h by Molmil
Crystal Structure of Q207C Mutant of CLC-ec1 in complex with Fab
分子名称: CHLORIDE ION, Fab fragment, H(+)/Cl(-) exchange transporter clcA
著者Nguitragool, W, Miller, C.
登録日2007-09-12
公開日2007-11-20
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal Structure of Q207C Mutant of CLC-ec1 in complex with Fab
To be Published
8X0J
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BU of 8x0j by Molmil
old yellow enzymes-Q102A/Y169F/R215A/R308A
分子名称: NADPH dehydrogenase, PHOSPHATE ION
著者Lei, W, Wei, S.
登録日2023-11-04
公開日2024-07-10
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Unlocking the function promiscuity of old yellow enzyme to catalyze asymmetric Morita-Baylis-Hillman reaction
To Be Published
1DAH
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BU of 1dah by Molmil
DETHIOBIOTIN SYNTHETASE COMPLEXED WITH 7,8-DIAMINO-NONANOIC ACID, 5'-ADENOSYL-METHYLENE-TRIPHOSPHATE, AND MANGANESE
分子名称: 7,8-DIAMINO-NONANOIC ACID, DETHIOBIOTIN SYNTHETASE, MANGANESE (II) ION, ...
著者Huang, W, Jia, J, Schneider, G, Lindqvist, Y.
登録日1995-05-08
公開日1996-06-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Mechanism of an ATP-dependent carboxylase, dethiobiotin synthetase, based on crystallographic studies of complexes with substrates and a reaction intermediate.
Biochemistry, 34, 1995
8XNH
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BU of 8xnh by Molmil
Nipah virus fusion glycoprotein in complex with a broadly neutralizing antibody 5C8
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5C8-VH, 5C8-VL, ...
著者Fan, P.F, Ren, Y, Yu, C.M, Chen, W.
登録日2023-12-30
公開日2024-07-10
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Nipah virus fusion glycoprotein in complex with a broadly neutralizing antibody 1D6
To Be Published
1DAI
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BU of 1dai by Molmil
DETHIOBIOTIN SYNTHETASE COMPLEXED WITH 7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID
分子名称: 7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID, DETHIOBIOTIN SYNTHETASE
著者Huang, W, Jia, J, Schneider, G, Lindqvist, Y.
登録日1995-05-08
公開日1996-06-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Mechanism of an ATP-dependent carboxylase, dethiobiotin synthetase, based on crystallographic studies of complexes with substrates and a reaction intermediate.
Biochemistry, 34, 1995
2D8L
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BU of 2d8l by Molmil
Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, Putative glycosyl hydrolase yteR
著者Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K.
登録日2005-12-06
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide
J.Mol.Biol., 360, 2006
2R9M
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Cathepsin S complexed with Compound 15
分子名称: Cathepsin S, N-[(1S)-2-[(4-cyano-1-methylpiperidin-4-yl)amino]-1-(cyclohexylmethyl)-2-oxoethyl]morpholine-4-carboxamide
著者Ward, Y.D, Emmanuel, M.J, Thomson, D.S, Liu, W, Bekkali, Y, Frye, L.L, Girardot, M, Morwick, T, Young, E.R.R, Zindell, R, Hrapchak, M, DeTuri, M, White, A, Crane, K.M, White, D.M, Wang, Y, Hao, M.-H, Grygon, C.A, Labadia, M.E, Wildeson, J, Freeman, D, Nelson, R, Capolino, A, Peterson, J.D, Raymond, E.L, Brown, M.L, Spero, D.M.
登録日2007-09-13
公開日2007-12-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Design and Synthesis of Reversible Inhibitors of Cathepsin S: alpha,alpha-Disubstitution at the P1 Residue Provides Potent Inhibitors in Cellular Assays and In Vivo Models of Antigen Presentation
To be Published
4GGD
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BU of 4ggd by Molmil
Structural analysis of human Cdc20 supports multisite degron recognition by APC/C.
分子名称: Cell division cycle protein 20 homolog, Mitotic checkpoint serine/threonine-protein kinase BUB1 beta
著者Luo, X, Tian, W, Tomchick, D.R.
登録日2012-08-06
公開日2012-11-07
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.435 Å)
主引用文献Structural analysis of human Cdc20 supports multisite degron recognition by APC/C.
Proc.Natl.Acad.Sci.USA, 109, 2012
2RGH
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Structure of Alpha-Glycerophosphate Oxidase from Streptococcus sp.: A Template for the Mitochondrial Alpha-Glycerophosphate Dehydrogenase
分子名称: Alpha-Glycerophosphate Oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
著者Colussi, T, Boles, W, Mallett, T.C, Karplus, P.A, Claiborne, A.
登録日2007-10-01
公開日2008-01-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of alpha-glycerophosphate oxidase from Streptococcus sp.: a template for the mitochondrial alpha-glycerophosphate dehydrogenase.
Biochemistry, 47, 2008
2RG2
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Crystal structure of variant R18L of conjugated bile acid hydrolase from Clostridium perfringens
分子名称: 1,2-ETHANEDIOL, Choloylglycine hydrolase, GLYCEROL, ...
著者Rossmann, M, Saenger, W.
登録日2007-10-02
公開日2009-02-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural analysis of variants of conjugated bile acid hydrolase from Clostridium perfringens
To be Published
121P
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BU of 121p by Molmil
STRUKTUR UND GUANOSINTRIPHOSPHAT-HYDROLYSEMECHANISMUS DES C-TERMINAL VERKUERZTEN MENSCHLICHEN KREBSPROTEINS P21-H-RAS
分子名称: H-RAS P21 PROTEIN, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
著者Krengel, U, Scheffzek, K, Scherer, A, Kabsch, W, Wittinghofer, A, Pai, E.F.
登録日1991-06-06
公開日1994-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras
Thesis, 1991

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