Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 34568 results

4RFE
DownloadVisualize
BU of 4rfe by Molmil
Crystal structure of ADCC-potent ANTI-HIV-1 Rhesus macaque antibody JR4 Fab
Descriptor: CHLORIDE ION, Fab heavy chain of ADCC-potent anti-HIV-1 antibody JR4, Fab light chain of ADCC-potent anti-HIV-1 antibody JR4, ...
Authors:Wu, X, Gohain, N, Tolbert, W.D, Pazgier, M.
Deposit date:2014-09-25
Release date:2015-07-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Cocrystal Structures of Antibody N60-i3 and Antibody JR4 in Complex with gp120 Define More Cluster A Epitopes Involved in Effective Antibody-Dependent Effector Function against HIV-1.
J.Virol., 89, 2015
6FUU
DownloadVisualize
BU of 6fuu by Molmil
Transcriptional regulator LmrR with bound heme
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Transcriptional regulator PadR family
Authors:Reddem, E.R, Thunnissen, A.M.W.H.
Deposit date:2018-02-27
Release date:2018-05-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:An Artificial Heme Enzyme for Cyclopropanation Reactions.
Angew. Chem. Int. Ed. Engl., 57, 2018
8DM5
DownloadVisualize
BU of 8dm5 by Molmil
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with human ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Saville, J.W, Mannar, D, Berezuk, A.M, Cholak, S, Tuttle, K.S, Vahdatihassani, F, Subramaniam, S.
Deposit date:2022-07-08
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Structural analysis of receptor engagement and antigenic drift within the BA.2 spike protein.
Cell Rep, 42, 2023
1U1C
DownloadVisualize
BU of 1u1c by Molmil
Structure of E. coli uridine phosphorylase complexed to 5-benzylacyclouridine (BAU)
Descriptor: 1-((2-HYDROXYETHOXY)METHYL)-5-BENZYLPYRIMIDINE-2,4(1H,3H)-DIONE, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Bu, W, Settembre, E.C, Ealick, S.E.
Deposit date:2004-07-15
Release date:2005-07-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for inhibition of Escherichia coli uridine phosphorylase by 5-substituted acyclouridines.
Acta Crystallogr.,Sect.D, 61, 2005
7DWO
DownloadVisualize
BU of 7dwo by Molmil
Crystal structure of Vibrio fischeri DarR in complex with DNA reveals the transcriptional activation mechanism of LTTR family members
Descriptor: Predicted DNA-binding transcriptional regulator
Authors:Wang, W.W, Wu, H, He, J.H, Yu, F.
Deposit date:2021-01-17
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.611 Å)
Cite:Crystal structure details of Vibrio fischeri DarR and mutant DarR-M202I from LTTR family reveals their activation mechanism.
Int.J.Biol.Macromol., 183, 2021
8DWL
DownloadVisualize
BU of 8dwl by Molmil
Inhibitor-3:PP1 coexpressed complex
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase PPP1R11, Serine/threonine-protein phosphatase PP1-alpha catalytic subunit, ...
Authors:Choy, M.S, Srivastava, G, Page, R, Peti, W.
Deposit date:2022-08-01
Release date:2023-02-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibitor-3 inhibits Protein Phosphatase 1 via a metal binding dynamic protein-protein interaction.
Nat Commun, 14, 2023
4N37
DownloadVisualize
BU of 4n37 by Molmil
Structure of langerin CRD I313 D288 complexed with Me-Man
Descriptor: C-type lectin domain family 4 member K, CALCIUM ION, methyl alpha-D-mannopyranoside
Authors:Feinberg, H, Rowntree, T.J.W, Tan, S.L.W, Drickamer, K, Weis, W.I, Taylor, M.E.
Deposit date:2013-10-06
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Common polymorphisms in human langerin change specificity for glycan ligands.
J.Biol.Chem., 288, 2013
4MY9
DownloadVisualize
BU of 4my9 by Molmil
Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor C91
Descriptor: INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase, MALONATE ION, ...
Authors:Kim, Y, Makowska-Grzyska, M, Gu, M, Gorla, S.K, Hedstrom, L, Anderson, W.F, Joachimiak, A, CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2013-09-27
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5893 Å)
Cite:Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor C91
To be Published
7DWN
DownloadVisualize
BU of 7dwn by Molmil
Crystal structure of Vibrio fischeri DarR in complex with DNA reveals the transcriptional activation mechanism of LTTR family members
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Predicted DNA-binding transcriptional regulator
Authors:Wang, W.W, Wu, H, He, J.H, Yu, F.
Deposit date:2021-01-17
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Crystal structure details of Vibrio fischeri DarR and mutant DarR-M202I from LTTR family reveals their activation mechanism.
Int.J.Biol.Macromol., 183, 2021
6FPG
DownloadVisualize
BU of 6fpg by Molmil
Structure of the Ustilago maydis chorismate mutase 1 in complex with a Zea mays kiwellin
Descriptor: CITRIC ACID, Chromosome 16, whole genome shotgun sequence, ...
Authors:Altegoer, F, Steinchen, W, Bange, G.
Deposit date:2018-02-09
Release date:2019-01-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A kiwellin disarms the metabolic activity of a secreted fungal virulence factor.
Nature, 565, 2019
5WUJ
DownloadVisualize
BU of 5wuj by Molmil
Crystal structure of FliF-FliG complex from H. pylori
Descriptor: Flagellar M-ring protein, Flagellar motor switch protein FliG, GLYCEROL
Authors:Au, S.W, Xue, C, Lam, K.H, Lee, S.H.
Deposit date:2016-12-19
Release date:2017-12-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the FliF-FliG complex from Helicobacter pylori yields insight into the assembly of the motor MS-C ring in the bacterial flagellum
J. Biol. Chem., 293, 2018
8DWK
DownloadVisualize
BU of 8dwk by Molmil
Inhibitor-3:PP1 reconstituted complex
Descriptor: E3 ubiquitin-protein ligase PPP1R11, MANGANESE (II) ION, Serine/threonine-protein phosphatase PP1-alpha catalytic subunit
Authors:Choy, M.S, Srivastava, G, Page, R, Peti, W.
Deposit date:2022-08-01
Release date:2023-02-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Inhibitor-3 inhibits Protein Phosphatase 1 via a metal binding dynamic protein-protein interaction.
Nat Commun, 14, 2023
6ZHB
DownloadVisualize
BU of 6zhb by Molmil
3D electron diffraction structure of bovine insulin
Descriptor: Insulin, ZINC ION
Authors:Blum, T, Housset, D, Clabbers, M.T.B, van Genderen, E, Bacia-Verloop, M, Zander, U, McCarthy, A.A, Schoehn, G, Ling, W.L, Abrahams, J.P.
Deposit date:2020-06-22
Release date:2021-01-27
Last modified:2024-01-24
Method:ELECTRON CRYSTALLOGRAPHY (3.25 Å)
Cite:Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals.
Acta Crystallogr D Struct Biol, 77, 2021
1RKX
DownloadVisualize
BU of 1rkx by Molmil
Crystal Structure at 1.8 Angstrom of CDP-D-glucose 4,6-dehydratase from Yersinia pseudotuberculosis
Descriptor: CDP-glucose-4,6-dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Vogan, E.M, Bellamacina, C, He, X, Liu, H.W, Ringe, D, Petsko, G.A.
Deposit date:2003-11-23
Release date:2004-03-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure at 1.8 A Resolution of CDP-d-Glucose 4,6-Dehydratase from Yersinia pseudotuberculosis
Biochemistry, 43, 2004
8JGA
DownloadVisualize
BU of 8jga by Molmil
Cryo-EM structure of Mi3 fused with FKBP
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
Authors:Zhang, H.W, Kang, W, Xue, C.
Deposit date:2023-05-20
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (3.68 Å)
Cite:Dynamic Metabolons Using Stimuli-Responsive Protein Cages.
J.Am.Chem.Soc., 146, 2024
6ZI8
DownloadVisualize
BU of 6zi8 by Molmil
X-ray diffraction structure of bovine insulin at 2.3 A resolution
Descriptor: CHLORIDE ION, Insulin, ZINC ION
Authors:Housset, D, Ling, W.L, Bacia-Verloop, M, Zander, U, McCarthy, A.A, Schoehn, G.
Deposit date:2020-06-25
Release date:2021-01-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals.
Acta Crystallogr D Struct Biol, 77, 2021
5W79
DownloadVisualize
BU of 5w79 by Molmil
Crystal Structure of the Group II Chaperonin from Methanococcus Maripaludis, Cysteine-less mutant in the Apo State
Descriptor: Chaperonin, SULFATE ION
Authors:Dalton, K.M, Lopez, T, Liu, C, Ralston, C.Y, Pereira, J.H, Chartron, J.W, McAndrew, R.P, Douglas, N.R, Adams, P.D, Pande, V.S, Frydman, J.
Deposit date:2017-06-19
Release date:2018-06-20
Last modified:2018-08-29
Method:X-RAY DIFFRACTION (3.122 Å)
Cite:The Conformational Cycle of the Group II Chaperonin Termini
To Be Published
8DNL
DownloadVisualize
BU of 8dnl by Molmil
Acidipropionibacterium acidipropionici encapsulin in an open state at pH 7.5
Descriptor: 29 kDa antigen cfp29
Authors:Jones, J.A, Andreas, M.P, Giessen, T.W.
Deposit date:2022-07-11
Release date:2023-03-22
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Exploring the Extreme Acid Tolerance of a Dynamic Protein Nanocage.
Biomacromolecules, 24, 2023
4RC8
DownloadVisualize
BU of 4rc8 by Molmil
Crystal structure of cyanobacterial aldehyde-deformylating oxygenase bound with fatty acid
Descriptor: Aldehyde decarbonylase, FE (III) ION, STEARIC ACID
Authors:Jia, C.J, Li, M, Chang, W.R.
Deposit date:2014-09-14
Release date:2014-12-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Structural insights into the catalytic mechanism of aldehyde-deformylating oxygenases.
Protein Cell, 6, 2015
8DNA
DownloadVisualize
BU of 8dna by Molmil
Acidipropionibacterium acidipropionici encapsulin in a closed state at pH 3.0
Descriptor: 29 kDa antigen cfp29
Authors:Jones, J.A, Andreas, M.P, Giessen, T.W.
Deposit date:2022-07-11
Release date:2023-03-22
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Exploring the Extreme Acid Tolerance of a Dynamic Protein Nanocage.
Biomacromolecules, 24, 2023
4RZC
DownloadVisualize
BU of 4rzc by Molmil
Fv M6P-1 in complex with mannose-6-phosphate
Descriptor: 6-O-phosphono-alpha-D-mannopyranose, Fv M6P-1 heavy chain, Fv M6P-1 light chain, ...
Authors:Blackler, R.J, Evans, D.W, Evans, S.V, Muller-Loennies, S.
Deposit date:2014-12-19
Release date:2015-11-04
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.723 Å)
Cite:Single-chain antibody-fragment M6P-1 possesses a mannose 6-phosphate monosaccharide-specific binding pocket that distinguishes N-glycan phosphorylation in a branch-specific manner.
Glycobiology, 26, 2016
5WGM
DownloadVisualize
BU of 5wgm by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with ACY-1083
Descriptor: 1,2-ETHANEDIOL, 2-[(4,4-difluoro-1-phenylcyclohexyl)amino]-N-hydroxypyrimidine-5-carboxamide, DI(HYDROXYETHYL)ETHER, ...
Authors:Porter, N.J, Christianson, D.W.
Deposit date:2017-07-14
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Unusual zinc-binding mode of HDAC6-selective hydroxamate inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8DN9
DownloadVisualize
BU of 8dn9 by Molmil
Acidipropionibacterium acidipropionici encapsulin in a closed state at pH 7.5
Descriptor: 29 kDa antigen cfp29
Authors:Jones, J.A, Andreas, M.P, Giessen, T.W.
Deposit date:2022-07-11
Release date:2023-03-22
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Exploring the Extreme Acid Tolerance of a Dynamic Protein Nanocage.
Biomacromolecules, 24, 2023
6ZCK
DownloadVisualize
BU of 6zck by Molmil
Coxsackievirus B4 in complex with capsid binder compound 48
Descriptor: 4-[(6-propoxynaphthalen-2-yl)sulfonylamino]benzoic acid, Capsid protein VP1, Capsid protein VP2, ...
Authors:Flatt, J.W, Domanska, A, Butcher, S.J.
Deposit date:2020-06-11
Release date:2021-03-17
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses.
Commun Biol, 4, 2021
6ZCL
DownloadVisualize
BU of 6zcl by Molmil
Coxsackievirus B3 in complex with capsid binder compound 17
Descriptor: 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid, MYRISTIC ACID, capsid protein VP1, ...
Authors:Domanska, A, Flatt, J.W, Butcher, S.J.
Deposit date:2020-06-11
Release date:2021-03-17
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses.
Commun Biol, 4, 2021

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon