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PDB: 34568 results

6TM8
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BU of 6tm8 by Molmil
Crystal structure of glycoprotein D of Equine Herpesvirus Type 4
Descriptor: Envelope glycoprotein D, GLYCEROL
Authors:Kremling, V, Loll, B, Osterrieder, N, Wahl, M, Dahmani, I, Chiantia, P, Azab, W.
Deposit date:2019-12-03
Release date:2020-11-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of glycoprotein D of equine alphaherpesviruses reveal potential binding sites to the entry receptor MHC-I.
Front Microbiol, 14, 2023
6N7F
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BU of 6n7f by Molmil
1.90 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus pyogenes in Complex with FAD.
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BICARBONATE ION, ...
Authors:Minasov, G, Shuvalova, L, Shabalin, I.G, Grabowski, M, Olphie, A, Cardona-Correa, A, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-11-27
Release date:2018-12-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:1.90 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus pyogenes in Complex with FAD.
To Be Published
6TPR
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BU of 6tpr by Molmil
PqsR (MvfR) bound to inhibitory compound 40
Descriptor: 2-[(5-methyl-[1,2,4]triazino[5,6-b]indol-3-yl)sulfanyl]-~{N}-(4-pyridin-2-yloxyphenyl)ethanamide, Transcriptional regulator MvfR
Authors:Richardson, W.K, Emsley, J.
Deposit date:2019-12-14
Release date:2020-05-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Hit Identification of New Potent PqsR Antagonists as Inhibitors of Quorum Sensing in Planktonic and Biofilm GrownPseudomonas aeruginosa.
Front Chem, 8, 2020
1PQM
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BU of 1pqm by Molmil
T4 Lysozyme Core Repacking Mutant V149I/T152V/TA
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, Lysozyme, ...
Authors:Mooers, B.H, Datta, D, Baase, W.A, Zollars, E.S, Mayo, S.L, Matthews, B.W.
Deposit date:2003-06-18
Release date:2003-10-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Repacking the Core of T4 Lysozyme by Automated Design
J.Mol.Biol., 332, 2003
6N54
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BU of 6n54 by Molmil
Crystal structure of human uridine-cytidine kinase 2 complexed with 2'-azidocytidine monophosphate
Descriptor: 2'-azido-2'-deoxycytidine 5'-(dihydrogen phosphate), GLYCEROL, MAGNESIUM ION, ...
Authors:Cuthbert, B.J, Nainar, S, Spitale, R.C, Goulding, C.W.
Deposit date:2018-11-21
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.424 Å)
Cite:An optimized chemical-genetic method for cell-specific metabolic labeling of RNA.
Nat.Methods, 17, 2020
1PR1
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BU of 1pr1 by Molmil
Escherichia coli Purine Nucleoside Phosphorylase Complexed with Formycin B and Phosphate/Sulfate
Descriptor: FORMYCIN B, PHOSPHATE ION, Purine nucleoside phosphorylase
Authors:Bennett, E.M, Li, C, Allan, P.W, Parker, W.B, Ealick, S.E.
Deposit date:2003-06-19
Release date:2003-11-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for substrate specificity of Escherichia coli purine nucleoside phosphorylase.
J.Biol.Chem., 278, 2003
7P20
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BU of 7p20 by Molmil
High resolution structure of the Juniperus ashei allergen - Jun a 3
Descriptor: CHLORIDE ION, Pathogenesis-related 5 protein Jun a 3.0101
Authors:Eder, M, Hofer, G, Keller, W.
Deposit date:2021-07-03
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the allergen Jun a 3 the Thaumatin-like protein of Juniperus ashei
To Be Published
8GP5
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BU of 8gp5 by Molmil
Structure of X18 UFO protomer in complex with F6 Fab VHVL domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, F6 Fab VH domain, ...
Authors:Niu, J, Xu, Y.W, Yang, B.
Deposit date:2022-08-25
Release date:2023-08-09
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Structures and immune recognition of Env trimers from two Asia prevalent HIV-1 CRFs.
Nat Commun, 14, 2023
1PSB
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BU of 1psb by Molmil
Solution structure of calcium loaded S100B complexed to a peptide from N-Terminal regulatory domain of NDR kinase.
Descriptor: Ndr Ser/Thr kinase-like protein, S-100 protein, beta chain
Authors:Bhattacharya, S, Large, E, Heizmann, C.W, Hemmings, B, Chazin, W.J.
Deposit date:2003-06-21
Release date:2003-12-16
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the Ca(2+)/S100B/NDR Kinase Peptide Complex: Insights into S100 Target Specificity and Activation of the Kinase.
Biochemistry, 42, 2003
6JQ7
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BU of 6jq7 by Molmil
The ligand-free structure of human PPARgamma LBD in the presence of the SRC-1 coactivator peptide
Descriptor: 16-mer peptide from Nuclear receptor coactivator 1, Peroxisome proliferator-activated receptor gamma
Authors:Jang, J.Y, Han, B.W.
Deposit date:2019-03-29
Release date:2019-10-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis for the inhibitory effects of a novel reversible covalent ligand on PPAR gamma phosphorylation.
Sci Rep, 9, 2019
4A9J
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BU of 4a9j by Molmil
N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N-(4-hydroxyphenyl) acetamide
Descriptor: 1,2-ETHANEDIOL, BROMODOMAIN CONTAINING 2, N-(4-HYDROXYPHENYL)ACETAMIDE (TYLENOL), ...
Authors:Chung, C.W, Bamborough, P.
Deposit date:2011-11-26
Release date:2012-01-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Fragment-Based Discovery of Bromodomain Inhibitors Part 1: Inhibitor Binding Modes and Implications for Lead Discovery.
J.Med.Chem., 55, 2012
7P0J
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BU of 7p0j by Molmil
Crystal structure of S.pombe Mdb1 BRCT domains
Descriptor: CITRIC ACID, DNA damage response protein Mdb1, MAGNESIUM ION, ...
Authors:Day, M, Oliver, A.W, Pearl, L.H.
Deposit date:2021-06-29
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Phosphorylation-dependent assembly of DNA damage response systems and the central roles of TOPBP1.
DNA Repair (Amst), 108, 2021
6BMD
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BU of 6bmd by Molmil
RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper
Descriptor: RNA (5'-D(*(GP3))-R(P*CP*AP*CP*CP*UP*CP*A)-3'), RNA (5'-R(P*GP*AP*GP*GP*UP*GP*(LCC)P*(LCC)P*GP*AP*GP*CP*GP*CP*GP*AP*AP*AP*GP*CP*GP*CP*UP*C)-3')
Authors:Zhang, W, Szostak, J.W.
Deposit date:2017-11-14
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide.
J. Am. Chem. Soc., 140, 2018
8GRJ
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BU of 8grj by Molmil
Crystal structure of gamma-alpha subunit complex from Burkholderia cepacia FAD glucose dehydrogenase in complex with gluconolactone
Descriptor: D-glucono-1,5-lactone, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Yoshida, H, Kojima, K, Tsugawa, W, Okuda-Shimazaki, J, Kerrigan, J.A, Sode, K.
Deposit date:2022-09-01
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of gamma-alpha subunit complex from Burkholderia cepacia FAD glucose dehydrogenase in complex with gluconolactone
To Be Published
2K25
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BU of 2k25 by Molmil
Automated NMR Structure of the UBB by FAPSY
Descriptor: UBB
Authors:Lee, W, Jung, J, Lee, W.
Deposit date:2008-03-24
Release date:2008-09-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Automated Suite for Protein Structure by NMR Spectroscopy
To be Published
6N53
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BU of 6n53 by Molmil
Crystal structure of human uridine-cytidine kinase 2 complexed with 2'-azidouridine monophosphate
Descriptor: 2'-deoxy-2'-triaza-1,2-dien-2-ium-1-yl-uridine-5'-monophosphate, GLYCEROL, MAGNESIUM ION, ...
Authors:Cuthbert, B.J, Nainar, S, Spitale, R.C, Goulding, C.W.
Deposit date:2018-11-21
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:An optimized chemical-genetic method for cell-specific metabolic labeling of RNA.
Nat.Methods, 17, 2020
6RTV
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BU of 6rtv by Molmil
Crystal Structure of Glucuronoyl Esterase from Cerrena unicolor inactive S270A variant
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-methyl-glucuronoyl methylesterase, ...
Authors:Ernst, H.A, Mosbech, C, Langkilde, A, Westh, P, Meyer, A, Agger, J.W, Larsen, S.
Deposit date:2019-05-27
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:The structural basis of fungal glucuronoyl esterase activity on natural substrates.
Nat Commun, 11, 2020
2JTT
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BU of 2jtt by Molmil
Solution structure of calcium loaded S100A6 bound to C-terminal Siah-1 interacting protein
Descriptor: Calcyclin-binding protein, Protein S100-A6
Authors:Lee, Y, Chazin, W.J.
Deposit date:2007-08-06
Release date:2008-08-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the S100A6 complex with a fragment from the C-terminal domain of Siah-1 interacting protein: a novel mode for S100 protein target recognition.
Biochemistry, 47, 2008
6HEB
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BU of 6heb by Molmil
Influenza A Virus N9 Neuraminidase complex with Oseltamivir (Tern).
Descriptor: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Salinger, M.T, Hobbs, J.R, Murray, J.W, Laver, W.G, Kuhn, P, Garman, E.F.
Deposit date:2018-08-20
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:High Resolution Structures of Viral Neuraminidase with Drugs Bound in the Active Site.
To Be Published
6NYF
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BU of 6nyf by Molmil
Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 1 (OA-1)
Descriptor: Vacuolating cytotoxin autotransporter
Authors:Zhang, K, Zhang, H, Li, S, Au, S, Chiu, W.
Deposit date:2019-02-11
Release date:2019-03-27
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structures ofHelicobacter pylorivacuolating cytotoxin A oligomeric assemblies at near-atomic resolution.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
8GW3
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BU of 8gw3 by Molmil
Crystal structure of human TAK1 kinase domain fused with TAB1
Descriptor: Mitogen-activated protein kinase kinase kinase 7, TGF-beta-activated kinase 1 and MAP3K7-binding protein 1
Authors:Liu, J, Sun, W, Gao, J.
Deposit date:2022-09-16
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of human TAK1 kinase domain fused with TAB1
To Be Published
8GW0
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BU of 8gw0 by Molmil
Crystal structure of the human dihydroorotase domain in complex with malic acid
Descriptor: (2S)-2-hydroxybutanedioic acid, CAD protein, ZINC ION
Authors:Yang, P.C, Liu, H.W, Huang, H.Y, Huang, C.Y.
Deposit date:2022-09-16
Release date:2023-09-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Complexed Crystal Structure of the Dihydroorotase Domain of Human CAD Protein with the Anticancer Drug 5-Fluorouracil.
Biomolecules, 13, 2023
6O0V
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BU of 6o0v by Molmil
Crystal structure of the TIR domain G601P mutant from human SARM1, crystal form 2
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Sterile alpha and TIR motif-containing protein 1
Authors:Horsefield, S, Burdett, H, Zhang, X, Manik, M.K, Shi, Y, Chen, J, Tiancong, Q, Gilley, J, Lai, J, Gu, W, Rank, M, Casey, L, Ericsson, D.J, Foley, G, Hughes, R.O, Bosanac, T, von Itzstein, M, Rathjen, J.P, Nanson, J.D, Boden, M, Dry, I.B, Williams, S.J, Staskawicz, B.J, Coleman, M.P, Ve, T, Dodds, P.N, Kobe, B.
Deposit date:2019-02-17
Release date:2019-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:NAD+cleavage activity by animal and plant TIR domains in cell death pathways.
Science, 365, 2019
6HFC
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BU of 6hfc by Molmil
Influenza A Virus N9 Neuraminidase Native (Tern).
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CARBON DIOXIDE, ...
Authors:Salinger, M.T, Hobbs, J.R, Murray, J.W, Laver, W.G, Kuhn, P, Garman, E.F.
Deposit date:2018-08-21
Release date:2018-08-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:High Resolution Structures of Viral Neuraminidase with Drugs Bound in the Active Site. (In preparation)
To Be Published
8GKN
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BU of 8gkn by Molmil
Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with S-naringenin
Descriptor: NARINGENIN, UDP-glycosyltransferase 202A2, URIDINE-5'-DIPHOSPHATE
Authors:Arriaza, R.H, Dermauw, W, Wybouw, N, Van Leeuwen, T, Chruszcz, M.
Deposit date:2023-03-20
Release date:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with S-naringenin
To Be Published

224004

数据于2024-08-21公开中

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