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PDB: 34840 件
8H7V
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Trans-3/4-proline-hydroxylase H11 with AKG
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, Phytanoyl-CoA dioxygenase
著者Gong, W.M, Hu, X.Y.
登録日2022-10-21
公開日2023-04-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
8HO1
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Crystal structure of cytochrome P450 NasF5053 mutant F387G
分子名称: CALCIUM ION, Cytochrome P450-F5053, PROTOPORPHYRIN IX CONTAINING FE
著者Ma, B.D, Tian, W, Qu, X, Kong, X.D.
登録日2022-12-09
公開日2023-04-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Engineering the Substrate Specificity of a P450 Dimerase Enables the Collective Biosynthesis of Heterodimeric Tryptophan-Containing Diketopiperazines.
Angew.Chem.Int.Ed.Engl., 62, 2023
8HNZ
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Crystal structure of cytochrome P450 NasF5053 mutant E73S complexed with 6FCWP
分子名称: (3~{S},8~{a}~{S})-3-[(5-fluoranyl-1~{H}-indol-3-yl)methyl]-2,3,6,7,8,8~{a}-hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, CALCIUM ION, Cytochrome P450-F5053, ...
著者Ma, B.D, Tian, W, Qu, X, Kong, X.D.
登録日2022-12-09
公開日2023-04-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Engineering the Substrate Specificity of a P450 Dimerase Enables the Collective Biosynthesis of Heterodimeric Tryptophan-Containing Diketopiperazines.
Angew.Chem.Int.Ed.Engl., 62, 2023
4KR2
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Glycyl-tRNA synthetase in complex with tRNA-Gly
分子名称: ADENOSINE MONOPHOSPHATE, Gly-tRNA-CCC, Glycine--tRNA ligase
著者Qin, X, Hao, Z, Tian, Q, Zhang, Z, Zhou, C, Xie, W.
登録日2013-05-16
公開日2014-05-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.292 Å)
主引用文献Cocrystal Structures of Glycyl-tRNA Synthetase in Complex with tRNA Suggest Multiple Conformational States in Glycylation
J.Biol.Chem., 289, 2014
8HIO
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Cryo-EM structure of the Cas12m2-crRNA binary complex
分子名称: Cas12m2, MAGNESIUM ION, RNA (56-MER), ...
著者Omura, N.S, Nakagawa, R, Wu, Y.W, Sudfeld, C, Warren, V.R, Hirano, H, Kusakizako, T, Kise, Y, Lebbink, H.G.J, Itoh, Y, Oost, V.D.J, Nureki, O.
登録日2022-11-21
公開日2023-04-12
最終更新日2023-08-30
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献Mechanistic and evolutionary insights into a type V-M CRISPR-Cas effector enzyme.
Nat.Struct.Mol.Biol., 30, 2023
4KSS
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BU of 4kss by Molmil
Crystal Structure of Vibrio cholerae ATPase GspsE Hexamer
分子名称: Type II secretion system protein E, hemolysin-coregulated protein
著者Hol, W.G, Turley, S, Lu, C.Y, Park, Y.J.
登録日2013-05-17
公開日2013-09-04
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (7.58 Å)
主引用文献Hexamers of the Type II Secretion ATPase GspE from Vibrio cholerae with Increased ATPase Activity.
Structure, 21, 2013
8GYN
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zebrafish TIPE1 strucutre in complex with PE
分子名称: Tumor necrosis factor alpha-induced protein 8-like protein 1, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
著者Wang, W, Cao, S.J.
登録日2022-09-23
公開日2023-04-19
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Structural insight into TIPE1 functioning as a lipid transfer protein.
J.Biomol.Struct.Dyn., 41, 2023
8H85
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Trans-3/4-proline-hydroxylase H11 with 3-hydroxyl-proline
分子名称: 3-HYDROXYPROLINE, Phytanoyl-CoA dioxygenase
著者Gong, W.M, Hu, X.Y.
登録日2022-10-21
公開日2023-04-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
4V9I
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Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S Ribosomal protein S10, ...
著者Fernandez, I.S, Ng, C.L, Kelley, A.C, Guowei, W, Yu, Y.T, Ramakrishnan, V.
登録日2013-04-04
公開日2014-07-09
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Unusual base pairing during the decoding of a stop codon by the ribosome.
Nature, 500, 2013
8HO0
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Crystal structure of cytochrome P450 NasF5053 mutant E73S complexed with 8FCWP
分子名称: (3~{S},8~{a}~{S})-3-[(7-fluoranyl-1~{H}-indol-3-yl)methyl]-2,3,6,7,8,8~{a}-hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, CALCIUM ION, Cytochrome P450-F5053, ...
著者Ma, B.D, Tian, W, Qu, X, Kong, X.D.
登録日2022-12-09
公開日2023-04-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Engineering the Substrate Specificity of a P450 Dimerase Enables the Collective Biosynthesis of Heterodimeric Tryptophan-Containing Diketopiperazines.
Angew.Chem.Int.Ed.Engl., 62, 2023
8H7T
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BU of 8h7t by Molmil
Trans-3/4-proline-hydroxylase H11 apo structure
分子名称: CHLORIDE ION, Phytanoyl-CoA dioxygenase
著者Gong, W.M, Hu, X.Y.
登録日2022-10-21
公開日2023-04-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
8HHM
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BU of 8hhm by Molmil
Cryo-EM structure of the Cas12m2-crRNA-target DNA ternary complex intermediate state
分子名称: Cas12m2, DNA (36-MER), MAGNESIUM ION, ...
著者Omura, N.S, Nakagawa, R, Wu, Y.W, Sudfeld, C, Warren, V.R, Hirano, H, Kusakizako, T, Kise, Y, Lebbink, H.G.J, Itoh, Y, Oost, V.D.J, Nureki, O.
登録日2022-11-16
公開日2023-04-12
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献Mechanistic and evolutionary insights into a type V-M CRISPR-Cas effector enzyme.
Nat.Struct.Mol.Biol., 30, 2023
8H81
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Trans-3/4-proline-hydroxylase H11 with 4-Hydroxyl-proline
分子名称: 4-HYDROXYPROLINE, Phytanoyl-CoA dioxygenase
著者Gong, W.M, Hu, X.Y.
登録日2022-10-21
公開日2023-04-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
4K48
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Structure of the Streptococcus pneumoniae leucyl-tRNA synthetase editing domain
分子名称: Leucine--tRNA ligase
著者Hu, Q.H, Liu, R.J, Fang, Z.P, Zhang, J, Ding, Y.Y, Tan, M, Wang, M, Pan, W, Zhou, H.C, Wang, E.D.
登録日2013-04-12
公開日2013-09-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Discovery of a potent benzoxaborole-based anti-pneumococcal agent targeting leucyl-tRNA synthetase
Sci Rep, 3, 2013
8HHL
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BU of 8hhl by Molmil
Cryo-EM structure of the Cas12m2-crRNA-target DNA full R-loop complex
分子名称: Cas12m2, MAGNESIUM ION, NTS (36-MER), ...
著者Omura, N.S, Nakagawa, R, Wu, Y.W, Sudfeld, C, Warren, V.R, Hirano, H, Kusakizako, T, Kise, Y, Lebbink, H.G.J, Itoh, Y, Oost, V.D.J, Nureki, O.
登録日2022-11-16
公開日2023-04-12
最終更新日2023-08-30
実験手法ELECTRON MICROSCOPY (2.87 Å)
主引用文献Mechanistic and evolutionary insights into a type V-M CRISPR-Cas effector enzyme.
Nat.Struct.Mol.Biol., 30, 2023
8H7Y
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BU of 8h7y by Molmil
Trans-3/4-proline-hydroxylase H11 with AKG and L-proline
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, PROLINE, ...
著者Gong, W.M, Hu, X.Y.
登録日2022-10-21
公開日2023-04-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
4KLD
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BU of 4kld by Molmil
DNA polymerase beta matched substrate complex with Ca2+, 0 s
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', ...
著者Freudenthal, B.D, Beard, W.A, Shock, D.D, Wilson, S.H.
登録日2013-05-07
公開日2013-07-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.916 Å)
主引用文献Observing a DNA polymerase choose right from wrong.
Cell(Cambridge,Mass.), 154, 2013
4KLR
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E343Q variant of human ferrochelatase
分子名称: BICARBONATE ION, CHLORIDE ION, CHOLIC ACID, ...
著者Lanzilotta, W.N, Medlock, A.E.
登録日2013-05-07
公開日2014-06-18
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献E343Q variant of human ferrochelatase
To be Published
4K9Q
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The Crystal Structure of Benzoylformate Decarboxylase from Polynucleobacter necessarius
分子名称: Benzoylformate Decarboxylase, MAGNESIUM ION, THIAMINE DIPHOSPHATE
著者Brodkin, H.R, Novak, W.R.P, McLeish, M.J.
登録日2013-04-20
公開日2014-04-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.598 Å)
主引用文献The Crystal Structure of Benzoylformate Decarboxylase from Polynucleobacter necessarius
To be Published
8HNY
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Crystal structure of cytochrome P450 NasF5053 mutant E73S complexed with 5FCWP
分子名称: (3~{S},8~{a}~{S})-3-[(4-fluoranyl-1~{H}-indol-3-yl)methyl]-2,3,6,7,8,8~{a}-hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, Cytochrome P450-F5053, PROTOPORPHYRIN IX CONTAINING FE
著者Ma, B.D, Tian, W, Qu, X, Kong, X.D.
登録日2022-12-09
公開日2023-04-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Engineering the Substrate Specificity of a P450 Dimerase Enables the Collective Biosynthesis of Heterodimeric Tryptophan-Containing Diketopiperazines.
Angew.Chem.Int.Ed.Engl., 62, 2023
8HP8
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BU of 8hp8 by Molmil
Crystal Structure of Engineered Endolysin EC340 derived from Gram-Negative Bacteria targeted Bacteriophage
分子名称: Endolysin mtEC340M
著者Wang, J.M, Yoon, W.S, Seo, M.D.
登録日2022-12-12
公開日2023-05-17
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.397 Å)
主引用文献Crystal structure of the engineered endolysin mtEC340M.
Acta Crystallogr.,Sect.F, 79, 2023
8GZF
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BU of 8gzf by Molmil
Crystal Structure of METTL9-SAH
分子名称: Protein-L-histidine N-pros-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Zhao, W.T, Li, H.T.
登録日2022-09-26
公開日2023-05-31
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular basis for protein histidine N1-specific methylation of the "His-x-His" motifs by METTL9.
Cell Insight, 2, 2023
4W8Q
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BU of 4w8q by Molmil
Crystal structure of truncated hemolysin A from P. mirabilis at 1.4 Angstroms resolution
分子名称: Hemolysin
著者Novak, W.R.P, Glasgow, E, Thompson, J.R, Weaver, T.M.
登録日2014-08-26
公開日2015-07-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.428 Å)
主引用文献Proteolysis of truncated hemolysin A yields a stable dimerization interface.
Acta Crystallogr F Struct Biol Commun, 73, 2017
8HI5
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Crystal structure of the NADP+ and MSA bound C terminal domain of bi-functional malonyl-CoA reductase from Roseiflexus castenholzii
分子名称: 3-oxidanylidenepropanoic acid, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Short-chain dehydrogenase/reductase SDR
著者Zhang, X, Wu, W.P, Xu, X.
登録日2022-11-18
公開日2023-05-31
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of a bi-functional malonyl-CoA reductase (MCR) from the photosynthetic green non-sulfur bacterium Roseiflexus castenholzii.
Mbio, 14, 2023
4WED
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Crystal structure of ABC transporter substrate-binding protein from Sinorhizobium meliloti
分子名称: ABC transporter, periplasmic solute-binding protein, FORMIC ACID, ...
著者Shabalin, I.G, Otwinowski, Z, Bacal, P, Cymborowski, M.T, Handing, K.B, Stead, M, Hammonds, J, Ahmed, M, Bonanno, J, Seidel, R, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
登録日2014-09-09
公開日2014-09-24
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of ABC transporter substrate-binding protein from Sinorhizobium meliloti
to be published

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