Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 101 results

4LT7
DownloadVisualize
BU of 4lt7 by Molmil
Crystal structure of the c2a domain of rabphilin-3a in complex with a calcium
Descriptor: CALCIUM ION, Rabphilin-3A
Authors:Verdaguer, N, Ferrer-Orta, C, Buxaderas, M, Corbalan-Garcia, S, Perez-Sanchez, D, Guerrero-Valero, M, Luengo, G, Pous, J, Guerra, P, Gomez-Fernandez, J.C, Guillen, J.
Deposit date:2013-07-23
Release date:2013-12-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the Ca2+ and PI(4,5)P2 binding modes of the C2 domains of rabphilin 3A and synaptotagmin 1.
Proc.Natl.Acad.Sci.USA, 110, 2013
1MQT
DownloadVisualize
BU of 1mqt by Molmil
Swine Vesicular Disease Virus coat protein
Descriptor: OCTANOIC ACID (2-HYDROXY-1-HYDROXYMETHYL-HEPTADEC-3-ENYL)-AMIDE, Polyprotein, Polyprotein Capsid Protein
Authors:Verdaguer, N, Jimenez-Clavero, M.A, Fita, I, Ley, V.
Deposit date:2002-09-17
Release date:2004-03-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:STRUCTURE OF SWINE VESICULAR DISEASE VIRUS: MAPPING OF CHANGES OCCURRING DURING ADAPTATION OF HUMAN COXSACKIE B5 VIRUS TO INFECT SWINE
J.Virol., 77, 2003
6GVV
DownloadVisualize
BU of 6gvv by Molmil
Mutant M16A of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus
Descriptor: GLYCEROL, RNA polymerase 3D
Authors:Verdaguer, N, Ferrer Orta, C.
Deposit date:2018-06-21
Release date:2018-08-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Contribution of a Multifunctional Polymerase Region of Foot-and-Mouth Disease Virus to Lethal Mutagenesis.
J.Virol., 92, 2018
6GVY
DownloadVisualize
BU of 6gvy by Molmil
Mutant M16A of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with an template -primer RNA
Descriptor: GLYCEROL, Genome polyprotein, RNA (5'-R(P*CP*CP*GP*GP*G)-3'), ...
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2018-06-21
Release date:2018-08-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Contribution of a Multifunctional Polymerase Region of Foot-and-Mouth Disease Virus to Lethal Mutagenesis.
J. Virol., 92, 2018
1V9U
DownloadVisualize
BU of 1v9u by Molmil
Human Rhinovirus 2 bound to a fragment of its cellular receptor protein
Descriptor: CALCIUM ION, Coat protein VP1, Coat protein VP2, ...
Authors:Verdaguer, N, Fita, I, Reithmayer, M, Moser, R, Blaas, D.
Deposit date:2004-02-03
Release date:2004-05-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:X-ray structure of a minor group human rhinovirus bound to a fragment of its cellular receptor protein
NAT.STRUCT.MOL.BIOL., 11, 2004
5JXS
DownloadVisualize
BU of 5jxs by Molmil
Mutant GC216/7AA of 3D polymerase from Foot-and-Mouth Disease Virus
Descriptor: MAGNESIUM ION, RNA Primer, RNA Template, ...
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2016-05-13
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Both cis and trans Activities of Foot-and-Mouth Disease Virus 3D Polymerase Are Essential for Viral RNA Replication.
J.Virol., 90, 2016
5LOW
DownloadVisualize
BU of 5low by Molmil
Structure of the Ca2+-bound Rabphilin 3A C2B domain SNAP25 complex (P21 space group)
Descriptor: CALCIUM ION, GLYCEROL, Rabphilin-3A, ...
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2016-08-10
Release date:2017-06-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural characterization of the Rabphilin-3A-SNAP25 interaction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1FPN
DownloadVisualize
BU of 1fpn by Molmil
HUMAN RHINOVIRUS SEROTYPE 2 (HRV2)
Descriptor: COAT PROTEIN VP1, COAT PROTEIN VP2, COAT PROTEIN VP3, ...
Authors:Verdaguer, N, Blaas, D, Fita, I.
Deposit date:2000-08-31
Release date:2000-09-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of human rhinovirus serotype 2 (HRV2).
J.Mol.Biol., 300, 2000
6S2L
DownloadVisualize
BU of 6s2l by Molmil
FMDV 3D polymerase crystallized in presence of (F)uridylylated VPg peptide
Descriptor: GLYCEROL, Genome polyprotein
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2019-06-21
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:(F)uridylylated Peptides Linked to VPg1 of Foot-and- Mouth Disease Virus (FMDV): Design, Synthesis and X-Ray Crystallography of the Complexes with FMDV RNA-Dependent RNA Polymerase.
Molecules, 24, 2019
4Y3C
DownloadVisualize
BU of 4y3c by Molmil
I304V 3D polymerase mutant of EMCV
Descriptor: 3D polymerase, CHLORIDE ION, GLYCEROL
Authors:Verdaguer, N, Ferrer-Orta, C, Vives-Adrian, L.
Deposit date:2015-02-10
Release date:2015-04-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The RNA Template Channel of the RNA-Dependent RNA Polymerase as a Target for Development of Antiviral Therapy of Multiple Genera within a Virus Family.
Plos Pathog., 11, 2015
4Y2C
DownloadVisualize
BU of 4y2c by Molmil
M300V 3D polymerase mutant of EMCV
Descriptor: GLYCEROL, Genome polyprotein
Authors:Verdaguer, N, Ferrer-Orta, C, Vives-Adrian, L.
Deposit date:2015-02-09
Release date:2015-04-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The RNA Template Channel of the RNA-Dependent RNA Polymerase as a Target for Development of Antiviral Therapy of Multiple Genera within a Virus Family.
Plos Pathog., 11, 2015
4WZM
DownloadVisualize
BU of 4wzm by Molmil
Mutant K18E of RNA dependent RNA polymerase from Foot-and-Mouth Disease Virus complexed with RNA
Descriptor: ACETATE ION, GLYCEROL, MANGANESE (II) ION, ...
Authors:Verdaguer, N, Ferrer-Orta, C, de la Higuera, N.
Deposit date:2014-11-20
Release date:2015-05-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition.
J.Virol., 89, 2015
1DSY
DownloadVisualize
BU of 1dsy by Molmil
C2 DOMAIN FROM PROTEIN KINASE C (ALPHA) COMPLEXED WITH CA2+ AND PHOSPHATIDYLSERINE
Descriptor: 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE, CALCIUM ION, PHOSPHATE ION, ...
Authors:Verdaguer, N, Corbalan-Garcia, S, Ochoa, W.F, Fita, I, Gomez-Fernandez, J.C.
Deposit date:2000-01-10
Release date:2000-01-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Ca(2+) bridges the C2 membrane-binding domain of protein kinase Calpha directly to phosphatidylserine.
EMBO J., 18, 1999
4X2B
DownloadVisualize
BU of 4x2b by Molmil
K20A RNA dependent RNA polymerase mutant from Foot-and-Mouth disease Virus complexed with an RNA
Descriptor: MAGNESIUM ION, RNA dependent RNA polymerase, RNA primer, ...
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2014-11-26
Release date:2015-05-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition.
J.Virol., 89, 2015
4WZQ
DownloadVisualize
BU of 4wzq by Molmil
Mutant K20E of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with RNA
Descriptor: MANGANESE (II) ION, RNA dependent-RNA polymerase 3D, RNA template, ...
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2014-11-20
Release date:2015-05-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition.
J.Virol., 89, 2015
2D47
DownloadVisualize
BU of 2d47 by Molmil
MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA
Descriptor: DNA (5'-D(*CP*CP*CP*CP*CP*GP*CP*GP*GP*GP*GP*G)-3'), SPERMINE
Authors:Verdaguer, N, Aymami, J, Fernandez-Forner, D, Fita, I, Coll, M, Huynh-Dinh, T, Igolen, J, Subirana, J.A.
Deposit date:1991-10-02
Release date:1991-10-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular structure of a complete turn of A-DNA.
J.Mol.Biol., 221, 1991
2PUS
DownloadVisualize
BU of 2pus by Molmil
Unprecedented activation mechanism of a non-canonical RNA-dependent RNA polymerase
Descriptor: IBDV VP1 RNA-dependant RNA polymerase
Authors:Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N.
Deposit date:2007-05-09
Release date:2007-11-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Activation mechanism of a noncanonical RNA-dependent RNA polymerase.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3KMS
DownloadVisualize
BU of 3kms by Molmil
G62S mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA trigonal structure
Descriptor: 3D polymerase, MAGNESIUM ION, RNA (5'-R(*AP*UP*GP*GP*GP*CP*C)-3'), ...
Authors:Ferrer-Orta, C, Verdaguer, N, Perez-Luque, R.
Deposit date:2009-11-11
Release date:2010-07-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin
J.Virol., 84, 2010
2GSY
DownloadVisualize
BU of 2gsy by Molmil
The 2.6A structure of Infectious Bursal Virus Derived T=1 Particles
Descriptor: CALCIUM ION, polyprotein
Authors:Garriga, D, Querol-Audi, J, Abaitua, F, Saugar, I, Pous, J, Verdaguer, N, Caston, J.R, Rodriguez, J.F.
Deposit date:2006-04-27
Release date:2006-07-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The 2.6-angstrom structure of infectious bursal disease virus-derived t=1 particles reveals new stabilizing elements of the virus capsid.
J.Virol., 80, 2006
4ZPY
DownloadVisualize
BU of 4zpy by Molmil
Structure of N170A MVM mutant empty capsid
Descriptor: VP1 protein
Authors:Guerra, P, Querol-Audi, J, Silva, C, Mateu, M.G, Verdaguer, N.
Deposit date:2015-05-08
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural basis for biologically relevant mechanical stiffening of a virus capsid by cavity-creating or spacefilling mutations.
Sci Rep, 7, 2017
1WNE
DownloadVisualize
BU of 1wne by Molmil
Foot and Mouth Disease Virus RNA-dependent RNA polymerase in complex with a template-primer RNA
Descriptor: 5'-R(*CP*AP*UP*GP*GP*GP*CP*C)-3', 5'-R(*GP*GP*CP*CP*C)-3', MAGNESIUM ION, ...
Authors:Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N.
Deposit date:2004-07-31
Release date:2004-08-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of Foot-and-Mouth Disease Virus RNA-dependent RNA Polymerase and Its Complex with a Template-Primer RNA
J.Biol.Chem., 279, 2004
6I7P
DownloadVisualize
BU of 6i7p by Molmil
Crystal structure of the full-length Zika virus NS5 protein (Human isolate Z1106033)
Descriptor: NS5, PHOSPHATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Ferrero, D.S, Ruiz-Arroyo, V.M, Soler, N, Uson, I, Verdaguer, N.
Deposit date:2018-11-16
Release date:2019-04-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.975 Å)
Cite:Supramolecular arrangement of the full-length Zika virus NS5.
Plos Pathog., 15, 2019
9EQO
DownloadVisualize
BU of 9eqo by Molmil
N-terminal domain Infectious Bursal Disease Virus (IBDV) VP3
Descriptor: Capsid protein VP3
Authors:Ferrero, D.S, Verdaguer, N.
Deposit date:2024-03-22
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structure of the amino terminal domain of the Birnaviral multifunctional VP3 protein and its unexplored critical role
To Be Published
9EQP
DownloadVisualize
BU of 9eqp by Molmil
N-terminal domain of Infectious Bursal Disease Virus (IBDV) VP3
Descriptor: Capsid protein VP3
Authors:Ferrero, D.S, Verdaguer, N.
Deposit date:2024-03-22
Release date:2024-10-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of the amino terminal domain of the Birnaviral multifunctional VP3 protein and its unexplored critical role.
To Be Published
9EQN
DownloadVisualize
BU of 9eqn by Molmil
N-terminal domain of Infectious Bursal Disease Virus (IBDV) VP3
Descriptor: ETHANOL, GLYCEROL, Structural polyprotein
Authors:Ferrero, D.S, Verdaguer, N.
Deposit date:2024-03-22
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Structure of the amino terminal domain of the Birnaviral multifunctional VP3 protein and its unexplored critical role
To Be Published

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon