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PDB: 316 results

8SKO
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BU of 8sko by Molmil
X-ray structure of the NDM-4 beta-lactamase from Klebsiella pneumonia with L-Captopril bound
Descriptor: L-CAPTOPRIL, Metallo-beta-lactamase type 2, ZINC ION
Authors:Thoden, J.B, Holden, H.M.
Deposit date:2023-04-20
Release date:2023-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Characterization of a novel inhibitor for the New Delhi metallo-beta-lactamase-4: Implications for drug design and combating bacterial drug resistance.
J.Biol.Chem., 299, 2023
4LXU
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BU of 4lxu by Molmil
dTdp-Fuc3N and 5-N-Formyl-THF
Descriptor: (3R,4S,5R,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate, 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ...
Authors:Thoden, J.B, Goneau, M.-F, Gilbert, M, Holden, H.M.
Deposit date:2013-07-30
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of a sugar N-formyltransferase from Campylobacter jejuni.
Biochemistry, 52, 2013
1UDC
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BU of 1udc by Molmil
STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-MANNOSE
Descriptor: 1,2-ETHANEDIOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, ...
Authors:Thoden, J.B, Holden, H.M.
Deposit date:1997-01-06
Release date:1998-01-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural analysis of UDP-sugar binding to UDP-galactose 4-epimerase from Escherichia coli.
Biochemistry, 36, 1997
4LXT
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BU of 4lxt by Molmil
Crystal structure WlaRD, a sugar 3N-formyl transferase in the presence of dTdp-Qui3N and 5-N-Formyl-THF
Descriptor: 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, ...
Authors:Thoden, J.B, Goneau, M.-F, Gilbert, M, Holden, H.M.
Deposit date:2013-07-30
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of a sugar N-formyltransferase from Campylobacter jejuni.
Biochemistry, 52, 2013
8SKP
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BU of 8skp by Molmil
X-ray structure of the NDM-4 beta-lactamase from Klebsiella pneumonia in complex with 1-hydroxypyridine-2(1H)-thione-6-carboxylic acid
Descriptor: 1,2-ETHANEDIOL, 1-hydroxy-6-sulfanylidene-1,6-dihydropyridine-2-carboxylic acid, Metallo-beta-lactamase type 2, ...
Authors:Thoden, J.B, Holden, H.M.
Deposit date:2023-04-20
Release date:2023-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Characterization of a novel inhibitor for the New Delhi metallo-beta-lactamase-4: Implications for drug design and combating bacterial drug resistance.
J.Biol.Chem., 299, 2023
8SK2
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BU of 8sk2 by Molmil
X-ray structure of the NDM-4 beta-lactamase from Klebsiella pneumonia, apo form
Descriptor: 1,2-ETHANEDIOL, Metallo-beta-lactamase type 2, ZINC ION
Authors:Thoden, J.B, Holden, H.M.
Deposit date:2023-04-18
Release date:2023-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Characterization of a novel inhibitor for the New Delhi metallo-beta-lactamase-4: Implications for drug design and combating bacterial drug resistance.
J.Biol.Chem., 299, 2023
4LY0
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BU of 4ly0 by Molmil
Crystal structure WlaRD, a sugar 3N-formyl transferase in the presence of dTDP-Glc and 10-N-Formyl-THF
Descriptor: 1,2-ETHANEDIOL, 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ...
Authors:Thoden, J.B, Goneau, M.-F, Gilbert, M, Holden, H.M.
Deposit date:2013-07-30
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a sugar N-formyltransferase from Campylobacter jejuni.
Biochemistry, 52, 2013
4LXX
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Crystal structure WlaRD, a sugar 3N-formyl transferase in the presence of dTDP-Fuc3NFo and 5-N-Formyl-THF
Descriptor: (2R,3R,4S,5R,6R)-4-(formylamino)-3,5-dihydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name), 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ...
Authors:thoden, J.B, goneau, M.-F, gilbert, M, holden, H.M.
Deposit date:2013-07-30
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of a sugar N-formyltransferase from Campylobacter jejuni.
Biochemistry, 52, 2013
4OQD
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BU of 4oqd by Molmil
Crystal structure of the tylM1 N,N-dimethyltransferase in complex with SAH and TDP-Qui3NMe2
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, TDP-3,6-dideoxy-3-N,N-dimethylglucose, dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
Authors:Thoden, J.B, Holden, H.M.
Deposit date:2014-02-08
Release date:2014-02-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Production of a novel N-monomethylated dideoxysugar.
Biochemistry, 53, 2014
4LXQ
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BU of 4lxq by Molmil
Crystal structure WlaRD, a sugar 3N-formyl transferase in the presence of dTdp and 5-N-Formyl-THF
Descriptor: 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, ...
Authors:Thoden, J.B, Goneau, M.-F, Gilbert, M, Holden, H.M.
Deposit date:2013-07-30
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of a sugar N-formyltransferase from Campylobacter jejuni.
Biochemistry, 52, 2013
4LY3
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BU of 4ly3 by Molmil
Crystal structure of WlaRD, a sugar 3N-formyl transferase in the presence of dTPD-Qui3N, dTDP-Qui3NFo, and THF
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, WlaRD a sugar 3N formyltransferase, ...
Authors:Thoden, J.B, Goneau, M.-F, Gilbert, M, Holden, H.M.
Deposit date:2013-07-30
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a sugar N-formyltransferase from Campylobacter jejuni.
Biochemistry, 52, 2013
4NV1
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BU of 4nv1 by Molmil
Crystal structure of a 4-N formyltransferase from Francisella tularensis
Descriptor: Formyltransferase, PHOSPHATE ION, THYMIDINE-5'-DIPHOSPHATE, ...
Authors:Thoden, J.B, Zimmer, A.L, Holden, H.M.
Deposit date:2013-12-04
Release date:2013-12-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Three-dimensional structure of a sugar N-formyltransferase from Francisella tularensis.
Protein Sci., 23, 2014
4LXY
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BU of 4lxy by Molmil
Crystal structure WlaRD, a sugar 3N-formyl transferase in the presence of dTDP and 10-N-Formyl-THF
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, N-{4-[{[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}(formyl)amino]benzoyl}-L-glutamic acid, THYMIDINE-5'-DIPHOSPHATE, ...
Authors:Thoden, J.B, Goneau, M.-F, Gilbert, M, Holden, H.M.
Deposit date:2013-07-30
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structure of a sugar N-formyltransferase from Campylobacter jejuni.
Biochemistry, 52, 2013
1HZJ
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BU of 1hzj by Molmil
HUMAN UDP-GALACTOSE 4-EPIMERASE: ACCOMMODATION OF UDP-N-ACETYLGLUCOSAMINE WITHIN THE ACTIVE SITE
Descriptor: CHLORIDE ION, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Thoden, J.B, Wohlers, T.M, Fridovich-Keil, J.L, Holden, H.M.
Deposit date:2001-01-25
Release date:2001-05-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Human UDP-galactose 4-epimerase. Accommodation of UDP-N-acetylglucosamine within the active site.
J.Biol.Chem., 276, 2001
1I3L
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BU of 1i3l by Molmil
MOLECULAR BASIS FOR SEVERE EPIMERASE-DEFICIENCY GALACTOSEMIA: X-RAY STRUCTURE OF THE HUMAN V94M-SUBSTITUTED UDP-GALACTOSE 4-EPIMERASE
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GALACTOSE-URIDINE-5'-DIPHOSPHATE, ...
Authors:Thoden, J.B, Wohlers, T.M, Fridovich-Keil, J.L, Holden, H.M.
Deposit date:2001-02-15
Release date:2001-06-20
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular basis for severe epimerase deficiency galactosemia. X-ray structure of the human V94m-substituted UDP-galactose 4-epimerase.
J.Biol.Chem., 276, 2001
1I3M
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BU of 1i3m by Molmil
MOLECULAR BASIS FOR SEVERE EPIMERASE-DEFICIENCY GALACTOSEMIA: X-RAY STRUCTURE OF THE HUMAN V94M-SUBSTITUTED UDP-GALACTOSE 4-EPIMERASE
Descriptor: CHLORIDE ION, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Thoden, J.B, Wohlers, T.M, Fridovich-Keil, J.L, Holden, H.M.
Deposit date:2001-02-15
Release date:2001-06-20
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular basis for severe epimerase deficiency galactosemia. X-ray structure of the human V94m-substituted UDP-galactose 4-epimerase.
J.Biol.Chem., 276, 2001
1I3K
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BU of 1i3k by Molmil
MOLECULAR BASIS FOR SEVERE EPIMERASE-DEFICIENCY GALACTOSEMIA: X-RAY STRUCTURE OF THE HUMAN V94M-SUBSTITUTED UDP-GALACTOSE 4-EPIMERASE
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Thoden, J.B, Wohlers, T.M, Fridovich-Keil, J.L, Holden, H.M.
Deposit date:2001-02-15
Release date:2001-06-20
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular basis for severe epimerase deficiency galactosemia. X-ray structure of the human V94m-substituted UDP-galactose 4-epimerase.
J.Biol.Chem., 276, 2001
1I3N
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BU of 1i3n by Molmil
MOLECULAR BASIS FOR SEVERE EPIMERASE-DEFICIENCY GALACTOSEMIA: X-RAY STRUCTURE OF THE HUMAN V94M-SUBSTITUTED UDP-GALACTOSE 4-EPIMERASE
Descriptor: CHLORIDE ION, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Thoden, J.B, Wohlers, T.M, Fridovich-Keil, J.L, Holden, H.M.
Deposit date:2001-02-15
Release date:2001-06-20
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular basis for severe epimerase deficiency galactosemia. X-ray structure of the human V94m-substituted UDP-galactose 4-epimerase.
J.Biol.Chem., 276, 2001
1UDA
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BU of 1uda by Molmil
STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE
Descriptor: 1,2-ETHANEDIOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, ...
Authors:Thoden, J.B, Holden, H.M.
Deposit date:1997-01-06
Release date:1998-01-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of UDP-sugar binding to UDP-galactose 4-epimerase from Escherichia coli.
Biochemistry, 36, 1997
8V4H
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BU of 8v4h by Molmil
X-ray structure of the NADP-dependent reductase from Campylobacter jejuni responsible for the synthesis of CDP-glucitol in the presence of CDP-glucitol
Descriptor: CHLORIDE ION, PHOSPHATE ION, Putative nucleotide sugar dehydratase, ...
Authors:Thoden, J.B, Schumann, M.E, Holden, H.M, Raushel, F.M.
Deposit date:2023-11-29
Release date:2023-12-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biosynthesis of Cytidine Diphosphate-6-d-Glucitol for the Capsular Polysaccharides of Campylobacter jejuni.
Biochemistry, 63, 2024
1UDB
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BU of 1udb by Molmil
STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-4-DEOXY-4-FLUORO-ALPHA-D-GLUCOSE
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Thoden, J.B, Holden, H.M.
Deposit date:1997-01-06
Release date:1998-01-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural analysis of UDP-sugar binding to UDP-galactose 4-epimerase from Escherichia coli.
Biochemistry, 36, 1997
1EK6
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BU of 1ek6 by Molmil
STRUCTURE OF HUMAN UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH NADH AND UDP-GLUCOSE
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, MAGNESIUM ION, TETRAMETHYLAMMONIUM ION, ...
Authors:Thoden, J.B, Wohlers, T.M, Fridovich-Keil, J.L, Holden, H.M.
Deposit date:2000-03-06
Release date:2000-05-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallographic evidence for Tyr 157 functioning as the active site base in human UDP-galactose 4-epimerase.
Biochemistry, 39, 2000
1EYZ
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BU of 1eyz by Molmil
STRUCTURE OF ESCHERICHIA COLI PURT-ENCODED GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE COMPLEXED WITH MG AND AMPPNP
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Thoden, J.B, Firestine, S, Nixon, A, Benkovic, S.J, Holden, H.M.
Deposit date:2000-05-09
Release date:2000-08-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular structure of Escherichia coli PurT-encoded glycinamide ribonucleotide transformylase.
Biochemistry, 39, 2000
1EZ1
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BU of 1ez1 by Molmil
STRUCTURE OF ESCHERICHIA COLI PURT-ENCODED GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE COMPLEXED WITH MG, AMPPNP, AND GAR
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ACETATE ION, GLYCINAMIDE RIBONUCLEOTIDE, ...
Authors:Thoden, J.B, Firestine, S, Nixon, A, Benkovic, S.J, Holden, H.M.
Deposit date:2000-05-09
Release date:2000-08-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular structure of Escherichia coli PurT-encoded glycinamide ribonucleotide transformylase.
Biochemistry, 39, 2000
5TID
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BU of 5tid by Molmil
X-ray structure of acyl-CoA thioesterase I, TesA, mutant M141L/Y145K/L146K at pH 5 in complex with octanoic acid
Descriptor: Acyl-CoA thioesterase I, OCTANOIC ACID (CAPRYLIC ACID)
Authors:Thoden, J.B, Holden, H.M, Grisewood, M.J, Hernandez Lozada, N.J, Gifford, N.P, Mendez-Perez, D, Schoenberger, H.A, Allan, M.F, Pfleger, B.F, Marines, C.D.
Deposit date:2016-10-02
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Computational Redesign of Acyl-ACP Thioesterase with Improved Selectivity toward Medium-Chain-Length Fatty Acids.
ACS Catal, 7, 2017

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