Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 197 件
3GP7
DownloadVisualize
BU of 3gp7 by Molmil
Staphylococcal Enterotoxin B mutant N23YK97SK98S
分子名称: Enterotoxin type B
著者Yanaka, S, Tanaka, Y, Tsumoto, K.
登録日2009-03-23
公開日2010-03-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Contribution of the flexible loop region to the function of staphylococcal enterotoxin B
Protein Eng.Des.Sel., 23, 2010
2P75
DownloadVisualize
BU of 2p75 by Molmil
Crystal structure of TTHB049 from Thermus thermophilus HB8
分子名称: Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL, SODIUM ION
著者Sugahara, M, Tanaka, Y, Matsuura, Y, Nakamoto, T, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-20
公開日2007-09-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of TTHB049 from Thermus thermophilus HB8
To be Published
2P9Z
DownloadVisualize
BU of 2p9z by Molmil
Crystal structure of TTHB049 from Thermus thermophilus HB8
分子名称: Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL, SODIUM ION
著者Sugahara, M, Taketa, M, Tanaka, Y, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-26
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of TTHB049 from Thermus thermophilus HB8
To be Published
2P2Z
DownloadVisualize
BU of 2p2z by Molmil
Crystal structure of TTHB049 from Thermus thermophilus HB8
分子名称: Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL, SODIUM ION
著者Sugahara, M, Taketa, M, Tanaka, Y, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-08
公開日2007-09-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of TTHB049 from Thermus thermophilus HB8
To be Published
2OWG
DownloadVisualize
BU of 2owg by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, diphthine synthase
著者Sugahara, M, Matsuura, Y, Tanaka, Y, Nakamoto, T, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-16
公開日2007-08-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2PA0
DownloadVisualize
BU of 2pa0 by Molmil
Crystal structure of TTHB049 from Thermus thermophilus HB8
分子名称: Alpha-ribazole-5'-phosphate phosphatase, CHLORIDE ION, GLYCEROL, ...
著者Sugahara, M, Tanaka, Y, Matsuura, Y, Nakamoto, T, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-27
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of TTHB049 from Thermus thermophilus HB8
To be Published
2ND5
DownloadVisualize
BU of 2nd5 by Molmil
Lysine dimethylated FKBP12
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A
著者Hattori, Y, Sebera, J, Sychrovsky, V, Furuita, K, Sugiki, T, Ohki, I, Ikegami, T, Kobayashi, N, Tanaka, Y, Fujiwara, T, Kojima, C.
登録日2016-05-05
公開日2017-05-17
実験手法SOLUTION NMR
主引用文献NMR Observation of Protein Surface Salt Bridges at Neutral pH
To be Published
6AL3
DownloadVisualize
BU of 6al3 by Molmil
Lys49 PLA2 BPII derived from the venom of Protobothrops flavoviridis.
分子名称: Basic phospholipase A2 BP-II, SULFATE ION
著者Matsui, T, Kamata, S, Suzuki, A, Oda-Ueda, N, Ogawa, T, Tanaka, Y.
登録日2018-09-05
公開日2019-01-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献SDS-induced oligomerization of Lys49-phospholipase A2from snake venom.
Sci Rep, 9, 2019
3ST7
DownloadVisualize
BU of 3st7 by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
分子名称: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
著者Miyafusa, T, Tanaka, Y, Kuroda, M, Yao, M, Watanabe, M, Ohta, T, Tanaka, I, Caaveiro, J.M.M, Tsumoto, K.
登録日2011-07-09
公開日2012-02-15
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal structure of the enzyme CapF of Staphylococcus aureus reveals a unique architecture composed of two functional domains.
Biochem.J., 443, 2012
2RT8
DownloadVisualize
BU of 2rt8 by Molmil
Structure of metallo-dna in solution
分子名称: DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION
著者Yamaguchi, H, Sebera, J, Kondo, J, Oda, S, Komuro, T, Kawamura, T, Dairaku, T, Kondo, Y, Okamoto, I, Ono, A, Burda, J.V, Kojima, C, Sychrovsky, V, Tanaka, Y.
登録日2013-06-18
公開日2014-03-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Res., 42, 2014
2RVP
DownloadVisualize
BU of 2rvp by Molmil
Solution structure of DNA Containing Metallo-Base-Pair
分子名称: DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3'), SILVER ION
著者Dairaku, T, Furuita, K, Sato, H, Sebera, J, Nakashima, K, Kondo, J, Yamanaka, D, Kondo, Y, Okamoto, I, Ono, A, Sychrovsky, V, Kojima, C, Tanaka, Y.
登録日2016-03-22
公開日2016-08-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure Determination of an Ag(I) -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with (1) H/(15) N/(109) Ag NMR Spectroscopy.
Chemistry, 22, 2016
4L25
DownloadVisualize
BU of 4l25 by Molmil
Crystal structure of DNA duplex containing consecutive T-T mispairs
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*TP*TP*TP*CP*GP*CP*G)-3')
著者Kondo, J, Yamada, T, Hirose, C, Tanaka, Y, Ono, A.
登録日2013-06-04
公開日2014-03-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-Hg(II) -T Base Pairs
Angew.Chem.Int.Ed.Engl., 53, 2014
4L24
DownloadVisualize
BU of 4l24 by Molmil
Crystal structure of metallo-DNA duplex containing consecutive T-Hg(II)-T base pairs
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*TP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION
著者Kondo, J, Yamada, T, Hirose, C, Okamoto, I, Tanaka, Y, Ono, A.
登録日2013-06-04
公開日2014-03-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-Hg(II) -T Base Pairs
Angew.Chem.Int.Ed.Engl., 53, 2014
4L26
DownloadVisualize
BU of 4l26 by Molmil
Crystal structure of DNA duplex containing consecutive T-T mispairs (Br-derivative)
分子名称: DNA (5'-D(*CP*GP*(CBR)P*GP*AP*TP*TP*TP*CP*GP*CP*G)-3')
著者Kondo, J, Yamada, T, Hirose, C, Tanaka, Y, Ono, A.
登録日2013-06-04
公開日2014-03-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-Hg(II) -T Base Pairs
Angew.Chem.Int.Ed.Engl., 53, 2014
5EXV
DownloadVisualize
BU of 5exv by Molmil
Crystal structure of heme binding protein HutX from Vibrio cholerae
分子名称: Hemin-degrading HemS.ChuX domain protein
著者Sekine, Y, Tanaka, Y, Uchida, T.
登録日2015-11-24
公開日2016-07-13
最終更新日2017-09-27
実験手法X-RAY DIFFRACTION (2.901 Å)
主引用文献Cytoplasmic Heme-Binding Protein (HutX) from Vibrio cholerae Is an Intracellular Heme Transport Protein for the Heme-Degrading Enzyme, HutZ
Biochemistry, 55, 2016
5DCV
DownloadVisualize
BU of 5dcv by Molmil
Crystal structure of PhoRpp38-SL12M complex
分子名称: 50S ribosomal protein L7Ae, RNA (47-MER)
著者Oshima, K, Tanaka, Y, Yao, M.
登録日2015-08-24
公開日2016-07-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.401 Å)
主引用文献Structural basis for recognition of a kink-turn motif by an archaeal homologue of human RNase P protein Rpp38
Biochem.Biophys.Res.Commun., 474, 2016
4Z3B
DownloadVisualize
BU of 4z3b by Molmil
Crystal structure of MnCO/apo-R52CFr
分子名称: CADMIUM ION, Ferritin light chain, GLYCEROL, ...
著者Fujita, K, Tanaka, Y, Abe, S, Ueno, T.
登録日2015-03-31
公開日2015-10-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献A Photoactive Carbon-Monoxide-Releasing Protein Cage for Dose-Regulated Delivery in Living Cells
Angew.Chem.Int.Ed.Engl., 55, 2016
8JH0
DownloadVisualize
BU of 8jh0 by Molmil
Crystal structure of the light-driven sodium pump IaNaR
分子名称: RETINAL, Xanthorhodopsin
著者Hashimoto, T, Kato, K, Tanaka, Y, Yao, M, Kikukawa, T.
登録日2023-05-22
公開日2023-11-01
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Multistep conformational changes leading to the gate opening of light-driven sodium pump rhodopsin.
J.Biol.Chem., 299, 2023
1IXL
DownloadVisualize
BU of 1ixl by Molmil
Crystal structure of uncharacterized protein PH1136 from Pyrococcus horikoshii
分子名称: hypothetical protein PH1136
著者Tajika, Y, Sakai, N, Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I.
登録日2002-06-27
公開日2003-09-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of conserved protein PH1136 from Pyrococcus horikoshii.
Proteins, 55, 2004
5IX7
DownloadVisualize
BU of 5ix7 by Molmil
Crystal structure of metallo-DNA nanowire with infinite one-dimensional silver array
分子名称: DNA (5'-D(*GP*GP*AP*CP*TP*(CBR)P*GP*AP*CP*TP*CP*C)-3'), POTASSIUM ION, SILVER ION
著者Kondo, J, Tada, Y, Dairaku, T, Hattori, Y, Saneyoshi, H, Ono, A, Tanaka, Y.
登録日2016-03-23
公開日2017-07-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.398 Å)
主引用文献A metallo-DNA nanowire with uninterrupted one-dimensional silver array
Nat Chem, 9, 2017
5GHA
DownloadVisualize
BU of 5gha by Molmil
Sulfur Transferase TtuA in complex with Sulfur Carrier TtuB
分子名称: 1,2-ETHANEDIOL, SULFATE ION, Sulfur Carrier TtuB, ...
著者Chen, M, Narai, S, Tanaka, Y, Yao, M.
登録日2016-06-19
公開日2017-05-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.502 Å)
主引用文献Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4YD9
DownloadVisualize
BU of 4yd9 by Molmil
Crystal structure of squid hemocyanin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CU2-O2 CLUSTER, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Matsuno, A, Gai, Z, Kato, K, Tanaka, Y, Yao, M.
登録日2015-02-21
公開日2015-10-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 angstrom Resolution
Structure, 23, 2015
5DE0
DownloadVisualize
BU of 5de0 by Molmil
Dye-decolorizing protein from V. cholerae
分子名称: Deferrochelatase, PROTOPORPHYRIN IX CONTAINING FE
著者Uchida, T, Sasaki, M, Tanaka, Y, Yao, M.
登録日2015-08-25
公開日2015-10-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献A Dye-Decolorizing Peroxidase from Vibrio cholerae.
Biochemistry, 54, 2015
8J4C
DownloadVisualize
BU of 8j4c by Molmil
YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera), ...
著者Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
登録日2023-04-19
公開日2024-03-27
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake
To Be Published
8K1R
DownloadVisualize
BU of 8k1r by Molmil
YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera)
著者Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
登録日2023-07-11
公開日2024-03-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake
To Be Published

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon