Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 280 results

1VCX
DownloadVisualize
BU of 1vcx by Molmil
Neutron Crystal Structure of the Wild Type Rubredoxin from Pyrococcus Furiosus at 1.5A Resolution
Descriptor: FE (III) ION, Rubredoxin
Authors:Kurihara, K, Tanaka, I, Chatake, T, Adams, M.W.W, Jenney Jr, F.E, Moiseeva, N, Bau, R, Niimura, N.
Deposit date:2004-03-17
Release date:2004-08-10
Last modified:2023-10-25
Method:NEUTRON DIFFRACTION (1.5 Å)
Cite:Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules
Proc.Natl.Acad.Sci.USA, 101, 2004
1VGJ
DownloadVisualize
BU of 1vgj by Molmil
Crystal structure of 2'-5' RNA ligase from Pyrococcus horikoshii
Descriptor: Hypothetical protein PH0099
Authors:Yao, M, Morita, H, Okada, A, Tanaka, I.
Deposit date:2004-04-27
Release date:2005-06-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft
ACTA CRYSTALLOGR.,SECT.F, 62, 2006
2CVI
DownloadVisualize
BU of 2cvi by Molmil
Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 75aa long hypothetical regulatory protein AsnC, POTASSIUM ION
Authors:Kitago, Y, Sakai, N, Matsumoto, D, Yao, M, Aizawa, T, Demura, M, Kawano, K, Nitta, K, Watanabe, N, Tanaka, I.
Deposit date:2005-06-03
Release date:2006-06-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii
TO BE PUBLISHED
2D74
DownloadVisualize
BU of 2d74 by Molmil
Crystal structure of translation initiation factor aIF2betagamma heterodimer
Descriptor: Translation initiation factor 2 beta subunit, Translation initiation factor 2 gamma subunit, ZINC ION
Authors:Sokabe, M, Yao, M, Sakai, N, Toya, S, Tanaka, I.
Deposit date:2005-11-16
Release date:2006-07-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region.
Proc.Natl.Acad.Sci.USA, 103, 2006
2D5V
DownloadVisualize
BU of 2d5v by Molmil
Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter
Descriptor: 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', ACETATE ION, ...
Authors:Iyaguchi, D, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I.
Deposit date:2005-11-07
Release date:2006-12-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6
Structure, 15, 2007
2DCU
DownloadVisualize
BU of 2dcu by Molmil
Crystal structure of translation initiation factor aIF2betagamma heterodimer with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Translation initiation factor 2 beta subunit, ...
Authors:Sokabe, M, Yao, M, Sakai, N, Toya, S, Tanaka, I.
Deposit date:2006-01-16
Release date:2006-07-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region.
Proc.Natl.Acad.Sci.USA, 103, 2006
2DF4
DownloadVisualize
BU of 2df4 by Molmil
Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Mn2+
Descriptor: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ...
Authors:Nakamura, A, Yao, M, Tanaka, I.
Deposit date:2006-02-23
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2DQN
DownloadVisualize
BU of 2dqn by Molmil
Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Asn
Descriptor: ASPARAGINE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A, Yao, M, Tanaka, I.
Deposit date:2006-05-29
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2DU9
DownloadVisualize
BU of 2du9 by Molmil
crystal structure of the transcriptional factor from C.glutamicum
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Predicted transcriptional regulators
Authors:Gao, Y, Yao, M, Tanaka, I.
Deposit date:2006-07-20
Release date:2007-07-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:The structures of transcription factor CGL2947 from Corynebacterium glutamicum in two crystal forms: A novel homodimer assembling and the implication for effector-binding mode
Protein Sci., 16, 2007
2E6U
DownloadVisualize
BU of 2e6u by Molmil
Crystal structure of hypothetical protein PH1109 from Pyrococcus horikoshii
Descriptor: CALCIUM ION, CHLORIDE ION, COENZYME A, ...
Authors:Kitago, Y, Min, Y, Watanabe, N, Tanaka, I.
Deposit date:2007-01-03
Release date:2007-01-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure determination of a novel protein by sulfur SAD using chromium radiation in combination with a new crystal-mounting method
ACTA CRYSTALLOGR.,SECT.D, 61, 2005
2EEX
DownloadVisualize
BU of 2eex by Molmil
Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I.
Deposit date:2007-02-19
Release date:2007-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
2E52
DownloadVisualize
BU of 2e52 by Molmil
Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolution
Descriptor: ACETATE ION, DNA (5'-D(*DGP*DCP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DGP*DGP*DC)-3'), GLYCEROL, ...
Authors:Watanabe, N, Sato, C, Tanaka, I.
Deposit date:2006-12-18
Release date:2007-12-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of restriction endonuclease HindIII in complex with its cognate DNA and divalent cations
Acta Crystallogr.,Sect.D, 65, 2009
2CZV
DownloadVisualize
BU of 2czv by Molmil
Crystal structure of archeal RNase P protein ph1481p in complex with ph1877p
Descriptor: ACETIC ACID, Ribonuclease P protein component 2, Ribonuclease P protein component 3, ...
Authors:Kawano, S, Kakuta, Y, Nakashima, T, Tanaka, I, Kimura, M.
Deposit date:2005-07-19
Release date:2006-06-27
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme
J.Mol.Biol., 357, 2006
2EFA
DownloadVisualize
BU of 2efa by Molmil
Neutron crystal structure of cubic insulin at pD6.6
Descriptor: Insulin
Authors:Ishikawa, T, Tanaka, I, Niimura, N.
Deposit date:2007-02-22
Release date:2008-01-22
Last modified:2023-10-25
Method:NEUTRON DIFFRACTION (2.7 Å)
Cite:A neutron crystallographic analysis of a cubic porcine insulin at pD 6.6
Chem.Phys., 345, 2008
2EJ1
DownloadVisualize
BU of 2ej1 by Molmil
Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I.
Deposit date:2007-03-14
Release date:2007-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
2E8G
DownloadVisualize
BU of 2e8g by Molmil
The structure of protein from P. horikoshii at 1.7 angstrom resolution
Descriptor: Hypothetical protein PH0536
Authors:Gao, Y.G, Yao, M, Tanaka, I.
Deposit date:2007-01-19
Release date:2008-01-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of protein PH0536 from Pyrococcus horikoshii at 1.7 A resolution reveals a novel assembly of an oligonucleotide/oligosaccharide-binding fold and an alpha-helical bundle
Proteins, 71, 2008
2E0P
DownloadVisualize
BU of 2e0p by Molmil
The crystal structure of Cel44A
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I.
Deposit date:2006-10-11
Release date:2007-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
2EK5
DownloadVisualize
BU of 2ek5 by Molmil
Crystal structure of the transcriptional factor from C.glutamicum at 2.2 angstrom resolution
Descriptor: Predicted transcriptional regulators
Authors:Gao, Y.G, Yao, M, Tanaka, I.
Deposit date:2007-03-22
Release date:2007-09-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structures of transcription factor CGL2947 from Corynebacterium glutamicum in two crystal forms: A novel homodimer assembling and the implication for effector-binding mode
Protein Sci., 16, 2007
2EO7
DownloadVisualize
BU of 2eo7 by Molmil
Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Kitao, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I.
Deposit date:2007-03-29
Release date:2007-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
2EQD
DownloadVisualize
BU of 2eqd by Molmil
Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I.
Deposit date:2007-03-30
Release date:2007-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
2CWI
DownloadVisualize
BU of 2cwi by Molmil
X-ray crystal structure analysis of recombinant wild-type canine milk lysozyme (apo-type)
Descriptor: Lysozyme C, milk isozyme, SULFATE ION
Authors:Akieda, D, Yasui, M, Aizawa, T, Yao, M, Watanabe, N, Tanaka, I, Demura, M, Kawano, K, Nitta, K.
Deposit date:2005-06-20
Release date:2006-06-20
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.941 Å)
Cite:Construction of an expression system of canine milk lysozyme in the methylotrophic yeast Pichia pastoris
To be Published
2F2A
DownloadVisualize
BU of 2f2a by Molmil
Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Gln
Descriptor: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, GLUTAMINE, ...
Authors:Nakamura, A, Yao, M, Tanaka, I.
Deposit date:2005-11-15
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2E4T
DownloadVisualize
BU of 2e4t by Molmil
Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I.
Deposit date:2006-12-16
Release date:2007-09-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
2F7L
DownloadVisualize
BU of 2f7l by Molmil
Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
Descriptor: 455aa long hypothetical phospho-sugar mutase, SULFATE ION
Authors:Kawamura, T, Sakai, N, Akutsu, J, Zhang, Z, Watanabe, N, Kawarabayashi, Y, Tanaka, I.
Deposit date:2005-12-01
Release date:2006-12-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
To be Published
2D5K
DownloadVisualize
BU of 2d5k by Molmil
Crystal structure of Dps from Staphylococcus aureus
Descriptor: Dps family protein, GLYCEROL
Authors:Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I.
Deposit date:2005-11-02
Release date:2006-10-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages
FEMS Microbiol. Lett., 360, 2014

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon