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PDB: 129 results

8QC0
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BU of 8qc0 by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT ribosylated
Descriptor: Nucleoside 2-deoxyribosyltransferase, ZINC ION, alpha-D-ribofuranose
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-08-25
Release date:2024-02-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
9CLR
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BU of 9clr by Molmil
Hydroxynitrile Lyase from Hevea brasiliensis with Seventy-one Mutations
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Tan, P, Meixner, E.L, Nguyen, A, Kazlaukas, R.J, Pierce, C.T, Evans, R.L, Shi, K, Aihara, H.
Deposit date:2024-07-12
Release date:2024-12-18
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Hydroxynitrile Lyase from Hevea brasiliensis with Seventy-one Mutations
To Be Published
9EMW
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BU of 9emw by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 Y7F Mutant bound to ImmH-Forodesine
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2024-03-11
Release date:2025-05-14
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Engineered nucleoside 2'-deoxyribonsyltransferase enzymes enable scalable synthesis of diverse nucleoside analogues
To Be Published
9EMX
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Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 Double Mutant Y7F A9S bound to Cordycepin
Descriptor: 3'-DEOXYADENOSINE, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2024-03-11
Release date:2025-05-07
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Engineered nucleoside 2'-deoxyribonsyltransferase enzymes enable scalable synthesis of diverse nucleoside analogues
To Be Published
8PQQ
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BU of 8pqq by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 E88Q Mutant bound to Clofarabine
Descriptor: 2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE, MAGNESIUM ION, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, M.C.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQR
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Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to DAD_Immucillin-H
Descriptor: 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.586 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQT
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Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to Bis-Tris
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQS
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BU of 8pqs by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 E88A Mutant
Descriptor: Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQP
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BU of 8pqp by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 D62N Mutant bound to ImmH-Forodesine
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, M.C.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.709 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
3D4F
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BU of 3d4f by Molmil
SHV-1 beta-lactamase complex with LN1-255
Descriptor: (3R)-4-{[(3,4-dihydroxyphenyl)acetyl]oxy}-N-(2-formylindolizin-3-yl)-3-sulfino-D-valine, Beta-lactamase SHV-1, CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE
Authors:Pattanaik, P, Bethel, C.R, Hujer, A.M, Bonomo, R.A, Buynak, J.D, van den Akker, F.
Deposit date:2008-05-14
Release date:2009-02-10
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Strategic Design of an Effective {beta}-Lactamase Inhibitor: LN-1-255, A 6-ALKYLIDENE-2'-SUBSTITUTED PENICILLIN SULFONE
J.Biol.Chem., 284, 2009
8RH3
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Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to Gemcitabine
Descriptor: (2~{R},3~{R})-4,4-bis(fluoranyl)-2-(hydroxymethyl)oxolan-3-ol, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-12-14
Release date:2024-02-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
7TDZ
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BU of 7tdz by Molmil
Cryo-EM model of protomer of the cytoplasmic ring of the nuclear pore complex from Xenopus laevis
Descriptor: Nuclear pore complex protein, Nuclear pore complex protein Nup85, Nuclear pore complex protein Nup96, ...
Authors:Fontana, P, Wu, H.
Deposit date:2022-01-03
Release date:2022-06-22
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Structure of cytoplasmic ring of nuclear pore complex by integrative cryo-EM and AlphaFold.
Science, 376, 2022
5I8U
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BU of 5i8u by Molmil
Crystal Structure of the RV1700 (MT ADPRASE) E142Q mutant
Descriptor: ADP-ribose pyrophosphatase, DI(HYDROXYETHYL)ETHER, FORMIC ACID, ...
Authors:Thirawatananond, P, Kang, L.-W, Amzel, L.M, Gabelli, S.B.
Deposit date:2016-02-19
Release date:2016-10-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Kinetic and mutational studies of the adenosine diphosphate ribose hydrolase from Mycobacterium tuberculosis.
J. Bioenerg. Biomembr., 48, 2016
5W6Z
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BU of 5w6z by Molmil
Crystal structure of the H24W mutant of HsNUDT16
Descriptor: SODIUM ION, U8 snoRNA-decapping enzyme
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-06-18
Release date:2018-12-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
5VY2
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BU of 5vy2 by Molmil
Crystal structure of the F36A mutant of HsNUDT16
Descriptor: SODIUM ION, U8 snoRNA-decapping enzyme
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-05-24
Release date:2018-11-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
5W6X
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BU of 5w6x by Molmil
Crystal structure of the HsNUDT16 in complex with Mg+2 and ADP-ribose
Descriptor: ACETIC ACID, ADENOSINE-5-DIPHOSPHORIBOSE, DI(HYDROXYETHYL)ETHER, ...
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-06-18
Release date:2018-12-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
5WJI
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BU of 5wji by Molmil
Crystal structure of the F61S mutant of HsNUDT16
Descriptor: ACETIC ACID, CHLORIDE ION, SULFATE ION, ...
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-07-23
Release date:2018-10-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
8WIO
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BU of 8wio by Molmil
Durio zibethinus trypsin inhibitor DzTI-10
Descriptor: 21 kDa seed protein-like, SULFATE ION
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-25
Release date:2024-09-25
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Kunitz-type trypsin inhibitor from durian (Durio zibethinus) employs a distinct loop for trypsin inhibition.
Protein Sci., 33, 2024
8WIN
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BU of 8win by Molmil
Durio zibethinus trypsin inhibitor DzTI-12
Descriptor: 21 kDa seed protein-like
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-25
Release date:2024-09-25
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Kunitz-type trypsin inhibitor from durian (Durio zibethinus) employs a distinct loop for trypsin inhibition.
Protein Sci., 33, 2024
8WFO
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BU of 8wfo by Molmil
Durio zibethinus trypsin inhibitor DzTI-4
Descriptor: 21 kDa seed protein-like, ACETATE ION, PENTAETHYLENE GLYCOL, ...
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-20
Release date:2024-09-25
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Kunitz-type trypsin inhibitor from durian (Durio zibethinus) employs a distinct loop for trypsin inhibition.
Protein Sci., 33, 2024
8WI1
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BU of 8wi1 by Molmil
Durio zibethinus trypsin inhibitor DzTI-8
Descriptor: 21 kDa seed protein-like
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-24
Release date:2024-09-25
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Kunitz-type trypsin inhibitor from durian (Durio zibethinus) employs a distinct loop for trypsin inhibition.
Protein Sci., 33, 2024
8WK1
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BU of 8wk1 by Molmil
Bovine trypsin in complex with Durio zibethinus trypsin inhibitor DzTI-4
Descriptor: 21 kDa seed protein-like, ACETATE ION, Cationic trypsin, ...
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-26
Release date:2024-10-02
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Kunitz-type trypsin inhibitor from durian (Durio zibethinus) employs a distinct loop for trypsin inhibition.
Protein Sci., 33, 2024
8WKB
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BU of 8wkb by Molmil
Durio zibethinus trypsin inhibitor DzTI-7
Descriptor: 21 kDa seed protein-like, CALCIUM ION, GLYCEROL
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-27
Release date:2024-10-02
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Kunitz-type trypsin inhibitor from durian (Durio zibethinus) employs a distinct loop for trypsin inhibition.
Protein Sci., 33, 2024
8WQ6
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Durio zibethinus trypsin inhibitor DzTI-5 (lattice translocation disorder)
Descriptor: 21 kDa seed protein-like, ACETATE ION, PENTAETHYLENE GLYCOL, ...
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-10-11
Release date:2024-10-16
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Kunitz-type trypsin inhibitor from durian (Durio zibethinus) employs a distinct loop for trypsin inhibition.
Protein Sci., 33, 2024
4GD8
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BU of 4gd8 by Molmil
SHV-1 beta-lactamase in complex with penam sulfone SA3-53
Descriptor: (2S,3R)-4-(2-aminoethylcarbamoyloxy)-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-sulfino-butanoic acid, Beta-lactamase SHV-1, CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE
Authors:Pattanaik, P, van den Akker, F.
Deposit date:2012-07-31
Release date:2013-07-31
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of SHV-1 beta-lactamase with penem and penam sulfone inhibitors that form cyclic intermediates stabilized by carbonyl conjugation
Plos One, 7, 2012

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