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PDB: 775 results

2RH6
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BU of 2rh6 by Molmil
Structure of Xac NPP for evaluation of refinement methodology
Descriptor: ADENOSINE MONOPHOSPHATE, Phosphodiesterase-nucleotide pyrophosphatase, ZINC ION
Authors:Zalatan, J.G, Fenn, T.D, Brunger, A.T, Hershlag, D.
Deposit date:2007-10-06
Release date:2007-10-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystallographic Goodness of Fit: A New Treatment of Model Complexity
To be Published
4Q71
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BU of 4q71 by Molmil
Crystal Structure of Bradyrhizobium japonicum Proline Utilization A (PutA) Mutant D779W
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Proline dehydrogenase, ...
Authors:Tanner, J.J, Luo, M, Pemberton, T.A.
Deposit date:2014-04-23
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A.
Biochemistry, 53, 2014
4Q72
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BU of 4q72 by Molmil
Crystal Structure of Bradyrhizobium japonicum Proline Utilization A (PutA) Mutant D779Y
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Proline dehydrogenase, ...
Authors:Tanner, J.J, Pemberton, T.A, Luo, M.
Deposit date:2014-04-23
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A.
Biochemistry, 53, 2014
3V9J
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BU of 3v9j by Molmil
Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with sulfate ion
Descriptor: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial, GLYCEROL, ...
Authors:Tanner, J.J, Srivastava, D.
Deposit date:2011-12-27
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.299 Å)
Cite:The Three-Dimensional Structural Basis of Type II Hyperprolinemia.
J.Mol.Biol., 420, 2012
3V9H
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BU of 3v9h by Molmil
Crystal structure of human 1-pyrroline-5-carboxylate dehydrogenase mutant S352A
Descriptor: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial, SULFATE ION
Authors:Tanner, J.J, Singh, R.K.
Deposit date:2011-12-27
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Three-Dimensional Structural Basis of Type II Hyperprolinemia.
J.Mol.Biol., 420, 2012
4E3V
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BU of 4e3v by Molmil
Crystal Structure of XYLOSE ISOMERASE FROM STREPTOMYCES RUBIGINOSUS Cryoprotected in Proline
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, PROLINE, ...
Authors:Tanner, J.J, Pemberton, T.A.
Deposit date:2012-03-10
Release date:2012-07-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.503 Å)
Cite:Proline: Mother Nature's cryoprotectant applied to protein crystallography.
Acta Crystallogr.,Sect.D, 68, 2012
4E3U
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BU of 4e3u by Molmil
Crystal Structure of Hen Egg White Lysozyme Cryoprotected in Proline
Descriptor: CHLORIDE ION, Lysozyme C, PROLINE
Authors:Tanner, J.J, Pemberton, T.A.
Deposit date:2012-03-10
Release date:2012-07-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Proline: Mother Nature's cryoprotectant applied to protein crystallography.
Acta Crystallogr.,Sect.D, 68, 2012
4PT2
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BU of 4pt2 by Molmil
Myxococcus xanthus encapsulin protein (EncA)
Descriptor: Encapsulin protein
Authors:Fontana, J, Aksyuk, A.A, Steven, A.C, Hoiczyk, E.
Deposit date:2014-03-10
Release date:2014-07-30
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:A virus capsid-like nanocompartment that stores iron and protects bacteria from oxidative stress.
Embo J., 33, 2014
4Q73
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BU of 4q73 by Molmil
Crystal Structure of Bradyrhizobium japonicum Proline Utilization A (PutA) Mutant D778Y
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Proline dehydrogenase, ...
Authors:Tanner, J.J, Luo, M, Pemberton, T.A.
Deposit date:2014-04-23
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A.
Biochemistry, 53, 2014
4OE4
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BU of 4oe4 by Molmil
Crystal Structure of Yeast ALDH4A1 Complexed with NAD+
Descriptor: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Tanner, J.J.
Deposit date:2014-01-11
Release date:2014-02-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.168 Å)
Cite:Structural Studies of Yeast Delta (1)-Pyrroline-5-carboxylate Dehydrogenase (ALDH4A1): Active Site Flexibility and Oligomeric State.
Biochemistry, 53, 2014
2GSN
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BU of 2gsn by Molmil
Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase
Descriptor: ZINC ION, phosphodiesterase-nucleotide pyrophosphatase
Authors:Zalatan, J.G, Fenn, T.D, Brunger, A.T, Herschlag, D.
Deposit date:2006-04-26
Release date:2006-08-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution
Biochemistry, 45, 2006
2FZN
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BU of 2fzn by Molmil
Structure of the E. coli PutA proline dehydrogenase domain reduced by dithionite and complexed with proline
Descriptor: Bifunctional protein putA, Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase), FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tanner, J.J.
Deposit date:2006-02-09
Release date:2006-12-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Hydrogen Bonding Interactions of the 2-OH Ribityl Group and the N(5) Position of the FAD Cofactor Regulate PutA-membrane Associations in Escherichia coli
To be Published
3V9K
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BU of 3v9k by Molmil
Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with the product glutamate
Descriptor: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial, GLUTAMIC ACID, ...
Authors:Tanner, J.J, Srivastava, D.
Deposit date:2011-12-27
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:The Three-Dimensional Structural Basis of Type II Hyperprolinemia.
J.Mol.Biol., 420, 2012
3V9L
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BU of 3v9l by Molmil
Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with NAD+
Descriptor: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial, GLYCEROL, ...
Authors:Tanner, J.J, Srivastava, D.
Deposit date:2011-12-27
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:The Three-Dimensional Structural Basis of Type II Hyperprolinemia.
J.Mol.Biol., 420, 2012
3V9I
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BU of 3v9i by Molmil
Crystal structure of human 1-pyrroline-5-carboxylate dehydrogenase mutant S352L
Descriptor: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial
Authors:Tanner, J.J, Singh, R.K.
Deposit date:2011-12-27
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The Three-Dimensional Structural Basis of Type II Hyperprolinemia.
J.Mol.Biol., 420, 2012
3VXV
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BU of 3vxv by Molmil
Crystal structure of methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), ...
Authors:Otani, J, Arita, K, Kato, T, Kinoshita, M, Ariyoshi, M, Shirakawa, M.
Deposit date:2012-09-21
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3V9G
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BU of 3v9g by Molmil
Crystal structure of human 1-pyrroline-5-carboxylate dehydrogenase
Descriptor: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial
Authors:Tanner, J.J, Srivastava, D.
Deposit date:2011-12-27
Release date:2012-05-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Three-Dimensional Structural Basis of Type II Hyperprolinemia.
J.Mol.Biol., 420, 2012
3VXX
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BU of 3vxx by Molmil
Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/5mCG sequence
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(*GP*TP*CP*(5CM)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J, Arita, K, Kato, T, Kinoshita, M, Ariyoshi, M, Shirakawa, M.
Deposit date:2012-09-21
Release date:2013-01-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VYQ
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BU of 3vyq by Molmil
Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*AP*CP*AP*TP*CP*(5CM)P*GP*GP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*AP*TP*GP*T)-3'), ...
Authors:Otani, J, Arita, K, Kato, T, Kinoshita, M, Ariyoshi, M, Shirakawa, M.
Deposit date:2012-10-02
Release date:2013-01-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.525 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3A1A
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BU of 3a1a by Molmil
Crystal Structure of the DNMT3A ADD domain
Descriptor: 1,2-ETHANEDIOL, DNA (cytosine-5)-methyltransferase 3A, ZINC ION
Authors:Otani, J, Arita, K, Ariyoshi, M, Shirakawa, M.
Deposit date:2009-03-28
Release date:2009-11-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain
Embo Rep., 10, 2009
5VWT
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BU of 5vwt by Molmil
Crystal structure of oxidized Aspergillus fumigatus UDP-galactopyranose mutase complexed with NADPH
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION, ...
Authors:Tanner, J.J.
Deposit date:2017-05-22
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Identification of the NAD(P)H binding site of eukaryotic UDP-galactopyranose mutase.
J. Am. Chem. Soc., 134, 2012
3ZDR
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BU of 3zdr by Molmil
Structure of the Alcohol dehydrogenase (ADH) domain of a bifunctional ADHE dehydrogenase from Geobacillus thermoglucosidasius NCIMB 11955
Descriptor: ALCOHOL DEHYDROGENASE DOMAIN OF THE BIFUNCTIONAL ACETALDEHYDE DEHYDROGENASE, GLYCEROL, SULFATE ION, ...
Authors:Extance, J, Crennell, S.J, Eley, K, Cripps, R, Hough, D.W, Danson, M.J.
Deposit date:2012-11-30
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.504 Å)
Cite:Structure of a Bifunctional Alcohol Dehydrogenase Involved in Bioethanol Generation in Geobacillus Thermoglucosidasius
Acta Crystallogr.,Sect.D, 69, 2013
6BSN
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BU of 6bsn by Molmil
Structure of proline utilization A (PutA) with proline bound in remote sites
Descriptor: Bifunctional protein PutA, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, PROLINE, ...
Authors:Tanner, J.J, Korasick, D.A.
Deposit date:2017-12-04
Release date:2018-01-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Basis for the Substrate Inhibition of Proline Utilization A by Proline.
Molecules, 23, 2017
5VWU
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BU of 5vwu by Molmil
Crystal structure of oxidized Aspergillus fumigatus UDP-galactopyranose mutase complexed with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, ...
Authors:Tanner, J.J.
Deposit date:2017-05-22
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Identification of the NAD(P)H binding site of eukaryotic UDP-galactopyranose mutase.
J. Am. Chem. Soc., 134, 2012
7FGX
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BU of 7fgx by Molmil
Toxoplasma gondii dihydrofolate reductase thymidylate synthase (TgDHFR-TS) complexed with P39, NADPH and dUMP
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 6-hexyl-5-phenyl-pyrimidine-2,4-diamine, Bifunctional dihydrofolate reductase-thymidylate synthase, ...
Authors:Vanichtanankul, J, Yoomuang, A, Taweechai, S, Saeyang, T, Yuvaniyama, J, Tarnchompoo, B, Yuthavong, Y, Kamchonwongpaisan, S.
Deposit date:2021-07-28
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Insight into Effective Inhibitors' Binding to Toxoplasma gondii Dihydrofolate Reductase Thymidylate Synthase.
Acs Chem.Biol., 17, 2022

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