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PDB: 144 results

9B3P
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BU of 9b3p by Molmil
The cryo-EM structure of the H2A.Z-H3.3 double-variant nucleosome
Descriptor: DNA (128-MER), Histone H2A.Z, Histone H2B 1.1, ...
Authors:Tan, D, Sokolova, V.
Deposit date:2024-03-19
Release date:2024-06-12
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural and Biochemical Characterization of the Nucleosome Containing Variants H3.3 and H2A.Z.
Epigenomes, 8, 2024
7XRC
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BU of 7xrc by Molmil
Crystal Structure of the dimeric Brn2 (Pou3f2) POU domain bound to palindromic MORE DNA
Descriptor: More palindromic Oct factor Recognition Element (MORE), POU domain protein
Authors:Tan, D.S.Y, Jauch, R.
Deposit date:2022-05-10
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The homeodomain of Oct4 is a dimeric binder of methylated CpG elements.
Nucleic Acids Res., 51, 2023
8UXQ
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BU of 8uxq by Molmil
Structure of Heterochromatin Protein 1 (HP1) alpha in complex with an H2A.Z nucleosome
Descriptor: Chromobox protein homolog 5, DNA Widom601 (208bp) strand1, DNA Widom601 (208bp) strand2, ...
Authors:Tan, D, Sokolova, V.
Deposit date:2023-11-09
Release date:2024-09-25
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Structure of human HP1 in complex with H2A.Z nucleosome
To Be Published
7M1X
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BU of 7m1x by Molmil
Cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z
Descriptor: DNA (136-MER), Histone H2A.Z, Histone H2B 1.1, ...
Authors:Tan, D, Lewis, T.
Deposit date:2021-03-15
Release date:2021-09-29
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of chromatin regulation by histone variant H2A.Z.
Nucleic Acids Res., 49, 2021
3EDL
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BU of 3edl by Molmil
Kinesin13-Microtubule Ring complex
Descriptor: 2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE, Beta tubulin, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Tan, D, Rice, W.J, Sosa, H.
Deposit date:2008-09-03
Release date:2009-01-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (28 Å)
Cite:Structure of the kinesin13-microtubule ring complex.
Structure, 16, 2008
4QOZ
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BU of 4qoz by Molmil
Crystal structure of the histone mRNA stem-loop, stem-loop binding protein (phosphorylated), and 3'hExo ternary complex
Descriptor: 3'-5' exoribonuclease 1, Histone RNA hairpin-binding protein, histone mRNA stem-loop
Authors:Tan, D, Tong, L.
Deposit date:2014-06-21
Release date:2014-07-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4QIK
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BU of 4qik by Molmil
Crystal structure of the ROQ domain of human Roquin in complex with the TNF23 RNA duplex
Descriptor: 5'-R(*AP*C*AP*UP*GP*UP*UP*UP*UP*CP*UP*GP*UP*GP*AP*AP*AP*AP*CP*GP*GP*AP*G)-3', CHLORIDE ION, GLYCEROL, ...
Authors:Tan, D, Tong, L.
Deposit date:2014-05-31
Release date:2014-07-16
Last modified:2014-08-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The ROQ domain of Roquin recognizes mRNA constitutive-decay element and double-stranded RNA.
Nat.Struct.Mol.Biol., 21, 2014
4QIL
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BU of 4qil by Molmil
Crystal structure of the ROQ domain of human Roquin in complex with the Hmg19 stem-loop RNA
Descriptor: 5'-R(*CP*UP*CP*CP*CP*UP*UP*CP*UP*GP*UP*GP*AP*AP*GP*GP*GP*GP*A)-3', CALCIUM ION, Roquin-1
Authors:Tan, D, Tong, L.
Deposit date:2014-05-31
Release date:2014-07-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The ROQ domain of Roquin recognizes mRNA constitutive-decay element and double-stranded RNA.
Nat.Struct.Mol.Biol., 21, 2014
4IZB
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BU of 4izb by Molmil
Crystal structure of DmdD, a crotonase superfamily enzyme that catalyzes the hydration and hydrolysis of methylthioacryloyl-CoA
Descriptor: Enoyl-CoA hydratase/isomerase family protein
Authors:Tan, D, Tong, L.
Deposit date:2013-01-29
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.504 Å)
Cite:Crystal Structure of DmdD, a Crotonase Superfamily Enzyme That Catalyzes the Hydration and Hydrolysis of Methylthioacryloyl-CoA.
Plos One, 8, 2013
4IZD
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BU of 4izd by Molmil
Crystal structure of DmdD E121A in complex with MMPA-CoA
Descriptor: 3-methylmercaptopropionate-CoA (MMPA-CoA), Enoyl-CoA hydratase/isomerase family protein
Authors:Tan, D, Tong, L.
Deposit date:2013-01-29
Release date:2013-06-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of DmdD, a Crotonase Superfamily Enzyme That Catalyzes the Hydration and Hydrolysis of Methylthioacryloyl-CoA.
Plos One, 8, 2013
4IZC
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BU of 4izc by Molmil
Crystal structure of DmdD E121A in complex with MTA-CoA
Descriptor: Enoyl-CoA hydratase/isomerase family protein, methylthioacryloyl-CoA
Authors:Tan, D, Tong, L.
Deposit date:2013-01-29
Release date:2013-06-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of DmdD, a Crotonase Superfamily Enzyme That Catalyzes the Hydration and Hydrolysis of Methylthioacryloyl-CoA.
Plos One, 8, 2013
4L8R
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BU of 4l8r by Molmil
Structure of mrna stem-loop, human stem-loop binding protein and 3'hexo ternary complex
Descriptor: 3'-5' exoribonuclease 1, HISTONE MRNA STEM-LOOP, Histone RNA hairpin-binding protein
Authors:Tan, D, Tong, L.
Deposit date:2013-06-17
Release date:2013-07-10
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Histone Mrna Stem-Loop, Human Stem-Loop Binding Protein, and 3'Hexo Ternary Complex.
Science, 339, 2013
6K7P
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BU of 6k7p by Molmil
Crystal structure of human AFF4-THD domain
Descriptor: AF4/FMR2 family member 4
Authors:Tang, D, Xue, Y, Li, S, Cheng, W, Duan, J, Wang, J, Qi, S.
Deposit date:2019-06-08
Release date:2020-03-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and functional insight into the effect of AFF4 dimerization on activation of HIV-1 proviral transcription.
Cell Discov, 6, 2020
6KYB
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BU of 6kyb by Molmil
Crystal structure of Atg18 from Saccharomyces cerevisiae
Descriptor: Autophagy-related protein 18
Authors:Tang, D, Lei, Y, Liao, G, Chen, Q, Xu, L, Lu, K, Qi, S.
Deposit date:2019-09-17
Release date:2020-09-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of Atg18 reveals a new binding site for Atg2 in Saccharomyces cerevisiae.
Cell.Mol.Life Sci., 78, 2021
2DC7
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BU of 2dc7 by Molmil
X-ray crystal structure analysis of bovine spleen cathepsin B-CA042 complex
Descriptor: CATHEPSIN B, GLYCEROL, N-{[(2S,3S)-3-(ETHOXYCARBONYL)OXIRAN-2-YL]CARBONYL}-L-THREONYL-L-ISOLEUCINE, ...
Authors:Watanabe, D.
Deposit date:2005-12-31
Release date:2006-01-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Quantitative estimation of each active subsite of cathepsin B for the inhibitory activity, based on the inhibitory activitybinding mode relationship of a series of epoxysuccinyl inhibitors by X-ray crystal structure analyses of the complexes
To be Published
2DC6
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BU of 2dc6 by Molmil
X-ray crystal structure analysis of bovine spleen cathepsin B-CA073 complex
Descriptor: BENZYL N-({(2S,3S)-3-[(PROPYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINATE, GLYCEROL, PHOSPHATE ION, ...
Authors:Watanabe, D.
Deposit date:2005-12-28
Release date:2006-01-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Quantitative estimation of each active subsite of cathepsin B for the inhibitory activity, based on the inhibitory activitybinding mode relationship of a series of epoxysuccinyl inhibitors by X-ray crystal structure analyses of the complexes
To be Published
2DCC
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BU of 2dcc by Molmil
X-ray crystal structure analysis of bovine spleen cathepsin B-CA077 complex
Descriptor: BENZYL N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINATE, CATHEPSIN B, GLYCEROL, ...
Authors:Watanabe, D.
Deposit date:2006-01-01
Release date:2006-01-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Quantitative estimation of each active subsite of cathepsin B for the inhibitory activity, based on the inhibitory activitybinding mode relationship of a series of epoxysuccinyl inhibitors by X-ray crystal structure analyses of the complexes
To be Published
2DCD
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BU of 2dcd by Molmil
X-ray crystal structure analysis of bovine spleen cathepsin B-CA078 complex
Descriptor: CATHEPSIN B, GLYCEROL, N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE, ...
Authors:Watanabe, D.
Deposit date:2006-01-01
Release date:2006-01-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Quantitative estimation of each active subsite of cathepsin B for the inhibitory activity, based on the inhibitory activitybinding mode relationship of a series of epoxysuccinyl inhibitors by X-ray crystal structure analyses of the complexes
To be Published
2DCB
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BU of 2dcb by Molmil
X-ray crystal structure analysis of bovine spleen cathepsin B-CA076 complex
Descriptor: CATHEPSIN B, GLYCEROL, N-{[(2S,3S)-3-(ETHOXYCARBONYL)OXIRAN-2-YL]CARBONYL}-L-ISOLEUCYL-L-ISOLEUCINE, ...
Authors:Watanabe, D.
Deposit date:2006-01-01
Release date:2006-01-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Quantitative estimation of each active subsite of cathepsin B for the inhibitory activity, based on the inhibitory activitybinding mode relationship of a series of epoxysuccinyl inhibitors by X-ray crystal structure analyses of the complexes
To be Published
2DCA
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BU of 2dca by Molmil
X-ray crystal structure analysis of bovine spleen cathepsin B-CA075 complex
Descriptor: CATHEPSIN B, GLYCEROL, N-{[(2S,3S)-3-(ETHOXYCARBONYL)OXIRAN-2-YL]CARBONYL}-L-ISOLEUCYL-L-ALANINE, ...
Authors:Watanabe, D.
Deposit date:2006-01-01
Release date:2006-01-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Quantitative estimation of each active subsite of cathepsin B for the inhibitory activity, based on the inhibitory activitybinding mode relationship of a series of epoxysuccinyl inhibitors by X-ray crystal structure analyses of the complexes
To be Published
2DC9
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BU of 2dc9 by Molmil
X-ray crystal structure analysis of bovine spleen cathepsin B-CA074Me complex
Descriptor: CATHEPSIN B, GLYCEROL, METHYL N-({(2S,3S)-3-[(PROPYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINATE, ...
Authors:Watanabe, D.
Deposit date:2005-12-31
Release date:2006-01-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Quantitative estimation of each active subsite of cathepsin B for the inhibitory activity, based on the inhibitory activitybinding mode relationship of a series of epoxysuccinyl inhibitors by X-ray crystal structure analyses of the complexes
To be Published
2DC8
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BU of 2dc8 by Molmil
X-ray crystal structure analysis of bovine spleen cathepsin B-CA059 complex
Descriptor: CATHEPSIN B, GLYCEROL, N-{[(2S,3S)-3-(ETHOXYCARBONYL)OXIRAN-2-YL]CARBONYL}-L-ISOLEUCINE, ...
Authors:Watanabe, D.
Deposit date:2005-12-31
Release date:2006-01-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Quantitative estimation of each active subsite of cathepsin B for the inhibitory activity, based on the inhibitory activitybinding mode relationship of a series of epoxysuccinyl inhibitors by X-ray crystal structure analyses of the complexes
To be Published
5TVU
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BU of 5tvu by Molmil
Crystal structure of mitochondrial Hsp90 (TRAP1) with ATP in absence of Mg
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, TNF receptor-associated protein 1
Authors:Elnatan, D, Betegon, M, Agard, D.A.
Deposit date:2016-11-10
Release date:2018-03-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1.
Elife, 6, 2017
5TVW
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BU of 5tvw by Molmil
Crystal structure of mitochondrial Hsp90 (TRAP1) with ATP in absence of Mg, hemi-hydrolyzed
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, COBALT (II) ION, ...
Authors:Elnatan, D, Betegon, M, Agard, D.A, Northeast Structural Genomics Consortium (NESG)
Deposit date:2016-11-10
Release date:2018-03-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1.
Elife, 6, 2017
6D14
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BU of 6d14 by Molmil
Zebrafish TRAP1 bound to AMPPNP and calcium in the asymmetric closed state
Descriptor: CALCIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, TNF receptor-associated protein 1
Authors:Elnatan, D, Agard, D.A.
Deposit date:2018-04-11
Release date:2018-04-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Calcium binding to a remote site can replace magnesium as cofactor for mitochondrial Hsp90 (TRAP1) ATPase activity.
J.Biol.Chem., 293, 2018

226707

数据于2024-10-30公开中

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