7ZPZ
| Crystal structure of Pizza6-TSR-TSH with Silicotungstic Acid (STA) polyoxometalate | Descriptor: | Keggin (STA), Pizza6-TSR-TSH | Authors: | Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2022-04-29 | Release date: | 2023-05-10 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.57 Å) | Cite: | Mutational study of a symmetry matched protein-polyoxometalate interface To be published
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7ZQ2
| Crystal structure of Pizza6-RSH-TSH with Silicotungstic Acid (STA) polyoxometalate | Descriptor: | Keggin (STA), Pizza6-RSH-TSH | Authors: | Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2022-04-29 | Release date: | 2023-05-10 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Mutational study of a symmetry matched protein-polyoxometalate interface To be published
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7ZQG
| Crystal structure of Pizza6-KSH-TSH with Silicotungstic Acid (STA) polyoxometalate | Descriptor: | Keggin (STA), Pizza6-KSH-TSH | Authors: | Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2022-04-29 | Release date: | 2023-05-10 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Mutational study of a symmetry matched protein-polyoxometalate interface To be published
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7ZPW
| Crystal structure of Pizza6-TSK-TSH with Silicotungstic Acid (STA) polyoxometalate | Descriptor: | Keggin (STA), Pizza6-TSK-TSH | Authors: | Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2022-04-29 | Release date: | 2023-05-10 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Mutational study of a symmetry matched protein-polyoxometalate interface. To be published
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7ZPH
| Crystal structure of Pizza6-TNK-RSH with Silicotungstic Acid (STA) polyoxometalate | Descriptor: | Keggin (STA), Pizza6-TNK-RSH | Authors: | Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2022-04-27 | Release date: | 2023-05-10 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.66 Å) | Cite: | Mutational study of a symmetry matched protein-polyoxometalate interface To be published
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1UEK
| Crystal structure of 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase | Descriptor: | 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase | Authors: | Wada, T, Kuramitsu, S, Yokoyama, S, Tame, J.R.H, Park, S.Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-05-17 | Release date: | 2003-06-17 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal Structure of 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an Enzyme in the Non-mevalonate Pathway of Isoprenoid Synthesis. J.Biol.Chem., 278, 2003
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2EXT
| TRAP4 (engineered TRAP) | Descriptor: | TRYPTOPHAN, Transcription attenuation protein mtrB | Authors: | Heddle, J.G, Yokoyama, T, Yamashita, I, Park, S.Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-08-01 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Rounding up: Engineering 12-Membered Rings from the Cyclic 11-Mer TRAP Structure, 14, 2006
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1WXR
| Crystal structure of Heme Binding protein, an autotransporter hemoglobine protease from pathogenic Escherichia coli | Descriptor: | haemoglobin protease | Authors: | Otto, B.R, Sijbrandi, R, Luirink, J, Oudega, B, Heddle, J.G, Mizutani, K, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-01-31 | Release date: | 2005-03-01 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of heme binding protein, an autotransporter hemoglobin protease from pathogenic escherichia coli J.Biol.Chem., 280, 2005
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2EX6
| Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with ampicillin | Descriptor: | (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
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1B2H
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1B1H
| OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX | Descriptor: | PROTEIN (LYS HPE LYS), PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN), URANYL (VI) ION | Authors: | Davies, T.G, Tame, J.R.H. | Deposit date: | 1998-11-10 | Release date: | 1998-11-18 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes. Protein Sci., 8, 1999
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6G6P
| Crystal structure of the computationally designed Ika8 protein: crystal packing No.2 in P63 | Descriptor: | Ika8 | Authors: | Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2018-04-01 | Release date: | 2018-11-28 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Computational design of symmetrical eight-bladed beta-propeller proteins. IUCrJ, 6, 2019
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6G6M
| Crystal structure of the computationally designed Tako8 protein in P42212 | Descriptor: | SULFATE ION, Tako8 | Authors: | Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2018-04-01 | Release date: | 2018-11-28 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Computational design of symmetrical eight-bladed beta-propeller proteins. IUCrJ, 6, 2019
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6G6Q
| Crystal structure of the computationally designed Ika4 protein | Descriptor: | Ika4 | Authors: | Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2018-04-01 | Release date: | 2018-11-28 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Computational design of symmetrical eight-bladed beta-propeller proteins. IUCrJ, 6, 2019
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6G6N
| Crystal structure of the computationally designed Tako8 protein in C2 | Descriptor: | Tako8 | Authors: | Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2018-04-01 | Release date: | 2018-11-28 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.001 Å) | Cite: | Computational design of symmetrical eight-bladed beta-propeller proteins. IUCrJ, 6, 2019
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1V9K
| The crystal structure of the catalytic domain of pseudouridine synthase RluC from Escherichia coli | Descriptor: | Ribosomal large subunit pseudouridine synthase C, SULFATE ION | Authors: | Machida, Y, Mizutani, K, Unzai, S, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2004-01-26 | Release date: | 2004-05-18 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli Biochemistry, 43, 2004
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6G6O
| Crystal structure of the computationally designed Ika8 protein: crystal packing No.1 in P63 | Descriptor: | GLYCEROL, Ika8 | Authors: | Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D. | Deposit date: | 2018-04-01 | Release date: | 2018-11-28 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | Computational design of symmetrical eight-bladed beta-propeller proteins. IUCrJ, 6, 2019
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2EXA
| Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FAROM | Descriptor: | (2R,5R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-[(2R)-tetrahydrofuran-2-yl]-2,5-dihydro-1,3-thiazole-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
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2EX8
| Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-G | Descriptor: | OPEN FORM - PENICILLIN G, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
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1V9F
| Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli | Descriptor: | PHOSPHATE ION, Ribosomal large subunit pseudouridine synthase D | Authors: | Mizutani, K, Machida, Y, Unzai, S, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2004-01-26 | Release date: | 2004-05-18 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli Biochemistry, 43, 2004
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2EX9
| Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-V | Descriptor: | (2R,4S)-5,5-dimethyl-2-{(1R)-2-oxo-1-[(phenoxyacetyl)amino]ethyl}-1,3-thiazolidine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
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2EXB
| Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FLOMOX | Descriptor: | 2,2-dimethylpropanoyloxymethyl (2R)-5-(aminocarbonyloxymethyl)-2-[(1R)-1-[[(Z)-2-(2-azanyl-1,3-thiazol-4-yl)pent-2-enoyl]amino]-2-oxidanylidene-ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylate, GLYCEROL, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
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6QSE
| Crystal structure of Pizza6S in the presence of Anderson-Evans (TEW) | Descriptor: | 6-tungstotellurate(VI), Pizza6S | Authors: | Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D. | Deposit date: | 2019-02-20 | Release date: | 2020-03-18 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry. Chem.Commun.(Camb.), 56, 2020
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6QSF
| Crystal structure of Pizza6S in the presence of Keggin (STA) | Descriptor: | Keggin (STA), Pizza6S | Authors: | Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D. | Deposit date: | 2019-02-20 | Release date: | 2020-03-18 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry. Chem.Commun.(Camb.), 56, 2020
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5XG5
| Crystal structure of Mitsuba-1 with bound NAcGal | Descriptor: | 2-acetamido-2-deoxy-alpha-D-galactopyranose, MITSUBA-1 | Authors: | Terada, D, Voet, A.R.D, Kamata, K, Zhang, K.Y.J, Tame, J.R.H. | Deposit date: | 2017-04-12 | Release date: | 2017-07-12 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.54 Å) | Cite: | Computational design of a symmetrical beta-trefoil lectin with cancer cell binding activity. Sci Rep, 7, 2017
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