2EX6
 
 | | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with ampicillin | | 分子名称: | (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4 | | 著者 | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | | 登録日 | 2005-11-08 | | 公開日 | 2006-06-13 | | 最終更新日 | 2016-10-19 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
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5F53
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1WUB
 | | Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus thermophilus HB8 | | 分子名称: | (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE, conserved hypothetical protein TT1927b | | 著者 | Handa, N, Idaka, M, Terada, T, Hamana, H, Ishizuka, Y, Park, S.-Y, Tame, J.R.H, Doi-Katayama, Y, Hirota, H, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2004-12-03 | | 公開日 | 2004-12-21 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8
Protein Sci., 14, 2005
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2NOO
 | | Crystal Structure of Mutant NikA | | 分子名称: | IODIDE ION, NICKEL (II) ION, Nickel-binding periplasmic protein | | 著者 | Addy, C, Ohara, M, Kawai, F, Kidera, A, Ikeguchi, M, Fuchigami, S, Osawa, M, Shimada, I, Park, S.Y, Tame, J.R.H, Heddle, J.G. | | 登録日 | 2006-10-26 | | 公開日 | 2007-01-23 | | 最終更新日 | 2024-10-30 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
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6LF2
 | | SeviL bound to asialo-GM1 saccharide | | 分子名称: | SeviL, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | | 著者 | Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H. | | 登録日 | 2019-11-28 | | 公開日 | 2020-12-02 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
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6LF1
 | | SeviL, a GM1b/asialo-GM1 binding lectin | | 分子名称: | CHLORIDE ION, SeviL | | 著者 | Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H. | | 登録日 | 2019-11-28 | | 公開日 | 2020-12-02 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
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1WXR
 | | Crystal structure of Heme Binding protein, an autotransporter hemoglobine protease from pathogenic Escherichia coli | | 分子名称: | haemoglobin protease | | 著者 | Otto, B.R, Sijbrandi, R, Luirink, J, Oudega, B, Heddle, J.G, Mizutani, K, Park, S.-Y, Tame, J.R.H. | | 登録日 | 2005-01-31 | | 公開日 | 2005-03-01 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Crystal structure of heme binding protein, an autotransporter hemoglobin protease from pathogenic escherichia coli
J.Biol.Chem., 280, 2005
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5CHB
 | | Crystal structure of nvPizza2-S16H58 coordinating a CdCl2 nanocrystal | | 分子名称: | CADMIUM ION, CHLORIDE ION, SULFATE ION, ... | | 著者 | Voet, A.R.D, Noguchi, H, Addy, C, Zhang, K.Y.J, Tame, J.R.H. | | 登録日 | 2015-07-10 | | 公開日 | 2015-07-22 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | | 主引用文献 | Biomineralization of a Cadmium Chloride Nanocrystal by a Designed Symmetrical Protein
Angew.Chem.Int.Ed.Engl., 54, 2015
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6QSG
 | | Crystal structure of the hybrid bioinorganic complex of Pizza6S and Keggin (STA) | | 分子名称: | Keggin (STA), Pizza6S | | 著者 | Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D. | | 登録日 | 2019-02-20 | | 公開日 | 2020-03-18 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (1.15 Å) | | 主引用文献 | Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
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1GCW
 | | CO form hemoglobin from mustelus griseus | | 分子名称: | CARBON MONOXIDE, PROTEIN (HEMOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE | | 著者 | Naoi, Y, Chong, K.T, Yoshimatsu, K, Miyazaki, G, Tame, J.R.H, Park, S.Y, Adachi, S.I, Morimoto, H. | | 登録日 | 2000-08-08 | | 公開日 | 2000-09-06 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | The functional similarity and structural diversity of human and cartilaginous fish hemoglobins.
J.Mol.Biol., 307, 2001
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1GCV
 | | DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS | | 分子名称: | HEMOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE | | 著者 | Naoi, Y, Chong, K.T, Yoshimatsu, K, Miyazaki, G, Tame, J.R.H, Park, S.Y, Adachi, S.I, Morimoto, H. | | 登録日 | 2000-08-08 | | 公開日 | 2000-08-31 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | The functional similarity and structural diversity of human and cartilaginous fish hemoglobins.
J.Mol.Biol., 307, 2001
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8Y5V
 | | GII.4 Sydney PD and 2'-FL | | 分子名称: | 1,2-ETHANEDIOL, GII.4 Sydney PD in complex with 2'-FL (powder), alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | | 著者 | Hansman, G, Tame, J.R.H, Kher, G, Pancera, M. | | 登録日 | 2024-02-01 | | 公開日 | 2024-06-19 | | 実験手法 | X-RAY DIFFRACTION (1.54 Å) | | 主引用文献 | GII.4 Sydney PD and 2'-FL
To Be Published
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8Y6C
 | | Norovirus GII.10 P domain and 2'-FL (powder) | | 分子名称: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GII.10 norovirus P domain in complex with 2'FL (powder), ... | | 著者 | Hansman, G, Tame, J.R.H, Kher, G, Pancera, M. | | 登録日 | 2024-02-02 | | 公開日 | 2024-06-19 | | 実験手法 | X-RAY DIFFRACTION (1.47 Å) | | 主引用文献 | Norovirus GII.10 P domain and 2'-FL (powder)
To Be Published
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8Y6D
 | | Norovirus GII.10 P domain and 2'-FL (tablet) | | 分子名称: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GII.10 norovirus P domain in complex with 2'-FL (tablet), ... | | 著者 | Hansman, G, Tame, J.R.H, Kher, G, Pancera, M. | | 登録日 | 2024-02-02 | | 公開日 | 2024-06-19 | | 実験手法 | X-RAY DIFFRACTION (1.41 Å) | | 主引用文献 | Norovirus GII.10 P domain and 2'-FL (tablet)
To Be Published
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4ZCN
 | | Crystal structure of nvPizza2-S16S58 | | 分子名称: | IODIDE ION, SULFATE ION, nvPizza2-S16S58 | | 著者 | Voet, A.R.D, Noguchi, H, Addy, C, Zhang, K.Y.J, Tame, J.R.H. | | 登録日 | 2015-04-16 | | 公開日 | 2015-07-01 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | | 主引用文献 | Crystal structure of nvPizza2-S16S58
To Be Published
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7FCI
 | | human NTCP in complex with YN69083 Fab | | 分子名称: | Fab Heavy chain, Fab Light chain, Sodium/bile acid cotransporter | | 著者 | Park, J.H, Iwamoto, M, Yun, J.H, Uchikubo-Kamo, T, Son, D, Jin, Z, Yoshida, H, Ohki, M, Ishimoto, N, Mizutani, K, Oshima, M, Muramatsu, M, Wakita, T, Shirouzu, M, Liu, K, Uemura, T, Nomura, N, Iwata, S, Watashi, K, Tame, J.R.H, Nishizawa, T, Lee, W, Park, S.Y. | | 登録日 | 2021-07-14 | | 公開日 | 2022-05-25 | | 最終更新日 | 2022-07-13 | | 実験手法 | ELECTRON MICROSCOPY (3.3 Å) | | 主引用文献 | Structural insights into the HBV receptor and bile acid transporter NTCP.
Nature, 606, 2022
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1RKM
 | | STRUCTURE OF OPPA | | 分子名称: | OLIGO-PEPTIDE BINDING PROTEIN | | 著者 | Sleigh, S.H, Tame, J.R.H, Wilkinson, A.J. | | 登録日 | 1997-03-25 | | 公開日 | 1997-07-29 | | 最終更新日 | 2023-08-09 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Peptide binding in OppA, the crystal structures of the periplasmic oligopeptide binding protein in the unliganded form and in complex with lysyllysine.
Biochemistry, 36, 1997
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6QSE
 | | Crystal structure of Pizza6S in the presence of Anderson-Evans (TEW) | | 分子名称: | 6-tungstotellurate(VI), Pizza6S | | 著者 | Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D. | | 登録日 | 2019-02-20 | | 公開日 | 2020-03-18 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
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6QSF
 | | Crystal structure of Pizza6S in the presence of Keggin (STA) | | 分子名称: | Keggin (STA), Pizza6S | | 著者 | Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D. | | 登録日 | 2019-02-20 | | 公開日 | 2020-03-18 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
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6QSD
 | | Crystal structure of Pizza6S | | 分子名称: | Pizza6S, SULFATE ION | | 著者 | Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D. | | 登録日 | 2019-02-20 | | 公開日 | 2020-03-18 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | | 主引用文献 | Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
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6QSH
 | | Crystal structure of the hybrid bioinorganic complex of Pizza6S linked by the 1:2 Ce-substituted Keggin | | 分子名称: | 1:2 Ce-substituted Keggin, Pizza6S | | 著者 | Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D. | | 登録日 | 2019-02-20 | | 公開日 | 2020-03-18 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
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7VUR
 | | Crystal structure of AlleyCat9 with calcium but no inhibitor | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, AlleyCat, CALCIUM ION | | 著者 | Margheritis, E, Takahashi, K, Korendovych, I.V, Tame, J.R.H. | | 登録日 | 2021-11-04 | | 公開日 | 2022-07-27 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | NMR-guided directed evolution.
Nature, 610, 2022
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7VUC
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6G6P
 | | Crystal structure of the computationally designed Ika8 protein: crystal packing No.2 in P63 | | 分子名称: | Ika8 | | 著者 | Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D. | | 登録日 | 2018-04-01 | | 公開日 | 2018-11-28 | | 最終更新日 | 2024-05-08 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
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6G6M
 | | Crystal structure of the computationally designed Tako8 protein in P42212 | | 分子名称: | SULFATE ION, Tako8 | | 著者 | Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D. | | 登録日 | 2018-04-01 | | 公開日 | 2018-11-28 | | 最終更新日 | 2024-05-08 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
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