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PDB: 107 results

5ZS9
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BU of 5zs9 by Molmil
SufS from Bacillus subtilis in the resting state
Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-28
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
5ZSS
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BU of 5zss by Molmil
L-Cysteine-PLP reaction intermediate of NifS from Hydrogenimonas thermophila
Descriptor: Cysteine desulfurase, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
Authors:Nakamura, T, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZSR
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BU of 5zsr by Molmil
NifS from Hydrogenimonas thermophila, soaked with L-cysteine for 8 min
Descriptor: Cysteine desulfurase
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZST
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BU of 5zst by Molmil
NifS from Hydrogenimonas thermopile in a persulfurated form
Descriptor: Cysteine desulfurase
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
5ZSQ
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BU of 5zsq by Molmil
NifS from Hydrogenimonas thermophila, soaked with L-cysteine for 4 min
Descriptor: Cysteine desulfurase
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.211 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZSK
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BU of 5zsk by Molmil
SufS from Bacillus subtilis soaked with L-cysteine for 63 sec
Descriptor: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, Cysteine desulfurase SufS
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-28
Release date:2019-05-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
5ZSP
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BU of 5zsp by Molmil
NifS from Hydrogenimonas thermophila
Descriptor: Cysteine desulfurase
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
5ZSO
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BU of 5zso by Molmil
SufS from Bacillus subtilis, soaked with L-cysteine for 90 sec
Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
5XT5
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BU of 5xt5 by Molmil
SufS-SufU complex from Bacillus subtilis
Descriptor: Cysteine desulfurase SufS, PYRIDOXAL-5'-PHOSPHATE, ZINC ION, ...
Authors:Fujishiro, T, Takahashi, Y.
Deposit date:2017-06-17
Release date:2017-12-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis
J. Am. Chem. Soc., 139, 2017
5Z06
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BU of 5z06 by Molmil
Crystal structure of beta-1,2-glucanase from Parabacteroides distasonis
Descriptor: BDI_3064 protein, CALCIUM ION, GLYCEROL
Authors:Shimizu, H, Nakajima, M, Miyanaga, A, Takahashi, Y, Tanaka, N, Kobayashi, K, Sugimoto, N, Nakai, H, Taguchi, H.
Deposit date:2017-12-18
Release date:2018-05-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterization and Structural Analysis of a Novel exo-Type Enzyme Acting on beta-1,2-Glucooligosaccharides from Parabacteroides distasonis
Biochemistry, 57, 2018
5XXN
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BU of 5xxn by Molmil
Crystal Structure of mutant (D286N) beta-glucosidase from Bacteroides thetaiotaomicron in complex with sophorose
Descriptor: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Periplasmic beta-glucosidase, ...
Authors:Nakajima, M, Ishiguro, R, Tanaka, N, Abe, K, Maeda, T, Miyanaga, A, Takahashi, Y, Sugimono, N, Nakai, H, Taguchi, H.
Deposit date:2017-07-04
Release date:2017-12-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase.
FEBS Lett., 591, 2017
7C6A
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BU of 7c6a by Molmil
Crystal structure of AT2R-BRIL and SRP2070_Fab complex
Descriptor: IgG Light Chain, IgG heavy chain, SAR1, ...
Authors:Suzuki, M, Miyagi, H, Asada, H, Yasunaga, M, Suno, C, Takahashi, Y, Saito, J, Iwata, S.
Deposit date:2020-05-21
Release date:2020-07-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The discovery of a new antibody for BRIL-fused GPCR structure determination.
Sci Rep, 10, 2020
7C61
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BU of 7c61 by Molmil
Crystal structure of 5-HT1B-BRIL and SRP2070_Fab complex
Descriptor: 5-hydroxytryptamine receptor 1B,Soluble cytochrome b562,5-hydroxytryptamine receptor 1B, Ergotamine, IGG HEAVY CHAIN, ...
Authors:Suzuki, M, Miyagi, H, Asada, H, Yasunaga, M, Suno, C, Takahashi, Y, Saito, J, Iwata, S.
Deposit date:2020-05-21
Release date:2020-07-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:The discovery of a new antibody for BRIL-fused GPCR structure determination.
Sci Rep, 10, 2020
7C8N
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BU of 7c8n by Molmil
Crystal structure of IscU H106A variant
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Nitrogen-fixing NifU domain protein
Authors:Kunichika, K, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-03
Release date:2021-05-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Structure of the Dimeric State of IscU Harboring Two Adjacent [2Fe-2S] Clusters Provides Mechanistic Insights into Cluster Conversion to [4Fe-4S].
Biochemistry, 60, 2021
7C8M
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BU of 7c8m by Molmil
Crystal structure of IscU wild-type
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Nitrogen-fixing NifU domain protein
Authors:Kunichika, K, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-03
Release date:2021-05-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The Structure of the Dimeric State of IscU Harboring Two Adjacent [2Fe-2S] Clusters Provides Mechanistic Insights into Cluster Conversion to [4Fe-4S].
Biochemistry, 60, 2021
7C8O
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BU of 7c8o by Molmil
Crystal structure of IscU D40A/H106A variant
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Nitrogen-fixing NifU domain protein
Authors:Kunichika, K, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-03
Release date:2021-06-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:[2Fe-2S] clusters-assembled dimeric structures of IscU iron-sulfur scaffold
to be published
7CET
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BU of 7cet by Molmil
Crystal structure of D-cycloserine-bound form of cysteine desulfurase NifS from Helicobacter pylori
Descriptor: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, CHLORIDE ION, Cysteine desulfurase IscS, ...
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CEQ
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BU of 7ceq by Molmil
Crystal structure of cysteine desulfurase SufS H121A from Bacillus subtilis
Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CER
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BU of 7cer by Molmil
Crystal structure of D-cycloserine-bound form of cysteine desulfurase SufS H121A from Bacillus subtilis
Descriptor: Cysteine desulfurase SufS, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, DI(HYDROXYETHYL)ETHER, ...
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CES
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BU of 7ces by Molmil
Crystal structure of L-cycloserine-bound form of cysteine desulfurase SufS H121A from Bacillus subtilis
Descriptor: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CEO
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BU of 7ceo by Molmil
Crystal structure of PMP-bound form of cysteine desulfurase SufS from Bacillus subtilis
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CEU
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BU of 7ceu by Molmil
Crystal structure of L-cycloserine-bound form of cysteine desulfurase NifS from Helicobacter pylori
Descriptor: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CNV
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BU of 7cnv by Molmil
Crystal structure of IscU H106C variant
Descriptor: FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, Nitrogen-fixing NifU domain protein, ...
Authors:Kunichika, K, Takahashi, Y, Fujishiro, T.
Deposit date:2020-08-03
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:[2Fe-2S] clusters-assembled dimeric structures of IscU iron-sulfur scaffold
to be published
7E6E
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BU of 7e6e by Molmil
Crystal structure of PMP-bound form of cysteine desulfurase SufS R376A from Bacillus subtilis in D-cycloserine-inhibition
Descriptor: 1,2-ETHANEDIOL, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Cysteine desulfurase SufS, ...
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2021-02-22
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 289, 2022
7E6A
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BU of 7e6a by Molmil
Crystal structure of cysteine desulfurase SufS C361A from Bacillus subtilis
Descriptor: 1,2-ETHANEDIOL, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2021-02-22
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 289, 2022

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