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PDB: 37 件
1RIQ
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The crystal structure of the catalytic fragment of the alanyl-tRNA synthetase
分子名称: Alanyl-tRNA synthetase
著者Swairjo, M.A, Otero, F.J, Yang, X.-L, Lovato, M.A, Skene, R.J, McRee, D.E, Ribas de Pouplana, L, Schimmel, P.
登録日2003-11-17
公開日2004-04-06
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Alanyl-tRNA Synthetase Crystal Structure and Design for Acceptor-Stem Recognition
Mol.Cell, 13, 2004
1PYB
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BU of 1pyb by Molmil
Crystal Structure of Aquifex aeolicus Trbp111: a Structure-Specific tRNA Binding Protein
分子名称: tRNA-binding protein Trbp111
著者Swairjo, M.A, Morales, A.J, Wang, C.C, Ortiz, A.R, Schimmel, P.
登録日2003-07-08
公開日2003-08-05
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of trbp111: a structure-specific tRNA-binding protein.
Embo J., 19, 2000
3D2O
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BU of 3d2o by Molmil
Crystal Structure of Manganese-metallated GTP Cyclohydrolase Type IB
分子名称: AZIDE ION, CHLORIDE ION, LITHIUM ION, ...
著者Swairjo, M.A.
登録日2008-05-08
公開日2009-05-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Zinc-independent folate biosynthesis: genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB
J.Bacteriol., 191, 2009
1YGB
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BU of 1ygb by Molmil
Crystal Structure of the catalytic fragment of alanyl-tRNA synthetase in complex with L-serine
分子名称: Alanyl-tRNA synthetase, SERINE
著者Swairjo, M.A, Schimmel, P.R.
登録日2005-01-04
公開日2005-01-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 102, 2005
1YFT
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BU of 1yft by Molmil
The crystal structure of the catalytic fragment of alanyl-tRNA synthetase in complex wtih glycine
分子名称: Alanyl-tRNA synthetase, GLYCINE
著者Swairjo, M.A, Schimmel, P.R.
登録日2005-01-03
公開日2005-01-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 102, 2005
6N9A
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BU of 6n9a by Molmil
Crystal Structure of Thermotoga maritima threonylcarbamoyladenosine biosynthesis complex TsaB2D2E2 bound to ATP and carboxy-AMP
分子名称: 2-(2-ETHOXYETHOXY)ETHANOL, 5'-O-[(R)-(carboxyoxy)(hydroxy)phosphoryl]adenosine, ADENOSINE-5'-DIPHOSPHATE, ...
著者Swairjo, M.A, Stec, B.
登録日2018-12-01
公開日2019-05-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Conformational communication mediates the reset step in t6A biosynthesis.
Nucleic Acids Res., 47, 2019
1YFR
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BU of 1yfr by Molmil
crystal structure of alanyl-tRNA synthetase in complex with ATP and magnesium
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Alanyl-tRNA synthetase, MAGNESIUM ION
著者Swairjo, M.A, Schimmel, P.R.
登録日2005-01-03
公開日2005-01-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 102, 2005
1YFS
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BU of 1yfs by Molmil
The crystal structure of alanyl-tRNA synthetase in complex with L-alanine
分子名称: ALANINE, Alanyl-tRNA synthetase
著者Swairjo, M.A, Schimmel, P.R.
登録日2005-01-03
公開日2005-01-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 102, 2005
3ERS
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BU of 3ers by Molmil
Crystal Structure of E. coli Trbp111
分子名称: tRNA-binding protein ygjH
著者Swairjo, M.A.
登録日2008-10-03
公開日2008-12-02
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Crystal structure of Trbp111: a tructure specific tRNA binding protein
Embo J., 19, 2000
1A8A
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BU of 1a8a by Molmil
RAT ANNEXIN V COMPLEXED WITH GLYCEROPHOSPHOSERINE
分子名称: ANNEXIN V, CALCIUM ION, L-ALPHA-GLYCEROPHOSPHORYLSERINE
著者Swairjo, M.A, Concha, N.O, Kaetzel, M.A, Dedman, J.R, Seaton, B.A.
登録日1998-03-23
公開日1998-06-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Ca(2+)-bridging mechanism and phospholipid head group recognition in the membrane-binding protein annexin V.
Nat.Struct.Biol., 2, 1995
1A8B
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RAT ANNEXIN V COMPLEXED WITH GLYCEROPHOSPHOETHANOLAMINE
分子名称: ANNEXIN V, CALCIUM ION, L-ALPHA-GLYCEROPHOSPHORYLETHANOLAMINE
著者Swairjo, M.A, Concha, N.O, Kaetzel, M.A, Dedman, J.R, Seaton, B.A.
登録日1998-03-23
公開日1998-06-17
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Ca(2+)-bridging mechanism and phospholipid head group recognition in the membrane-binding protein annexin V.
Nat.Struct.Biol., 2, 1995
1BDR
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BU of 1bdr by Molmil
HIV-1 (2: 31, 33-37) PROTEASE COMPLEXED WITH INHIBITOR SB203386
分子名称: (2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE, HIV-1 PROTEASE
著者Swairjo, M.A, Abdel-Meguid, S.S.
登録日1998-05-10
公開日1998-10-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural role of the 30's loop in determining the ligand specificity of the human immunodeficiency virus protease.
Biochemistry, 37, 1998
1BDQ
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HIV-1 (2:31-37, 47, 82) PROTEASE COMPLEXED WITH INHIBITOR SB203386
分子名称: (2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE, HIV-1 PROTEASE
著者Swairjo, M.A, Abdel-Meguid, S.S.
登録日1998-05-10
公開日1998-08-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural role of the 30's loop in determining the ligand specificity of the human immunodeficiency virus protease.
Biochemistry, 37, 1998
1BDL
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BU of 1bdl by Molmil
HIV-1 (2:31-37) PROTEASE COMPLEXED WITH INHIBITOR SB203386
分子名称: (2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE, HIV-1 PROTEASE
著者Swairjo, M.A, Abdel-Meguid, S.S.
登録日1998-05-10
公開日1998-08-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural role of the 30's loop in determining the ligand specificity of the human immunodeficiency virus protease.
Biochemistry, 37, 1998
8DL3
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BU of 8dl3 by Molmil
Crystal structure of the human queuine salvage enzyme DUF2419, complexed with queuine
分子名称: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, Queuosine salvage protein
著者Hung, S.-H, Swairjo, M.A.
登録日2022-07-06
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
2AZX
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BU of 2azx by Molmil
Charged and uncharged tRNAs adopt distinct conformations when complexed with human tryptophanyl-tRNA synthetase
分子名称: 72-MER, GLYCEROL, MAGNESIUM ION, ...
著者Yang, X.L, Otero, F.J, Ewalt, K.L, Liu, J, Swairjo, M.A, Kohrer, C, RajBhandary, U.L, Skene, R.J, McRee, D.E, Schimmel, P.
登録日2005-09-12
公開日2006-08-01
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis.
Embo J., 25, 2006
5K9G
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BU of 5k9g by Molmil
Crystal Structure of GTP Cyclohydrolase-IB with Tris
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, ...
著者Alvarez, J, Stec, B, Swairjo, M.A.
登録日2016-05-31
公開日2016-09-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanism and catalytic strategy of the prokaryotic-specific GTP cyclohydrolase-IB.
Biochem.J., 474, 2017
4F8B
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Crystal Structure of the Covalent Thioimide Intermediate of Unimodular Nitrile Reductase QueF
分子名称: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, MAGNESIUM ION, ...
著者Stec, B, Swairjo, M.A.
登録日2012-05-17
公開日2012-07-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.502 Å)
主引用文献Structural basis of biological nitrile reduction.
J.Biol.Chem., 287, 2012
4FGC
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BU of 4fgc by Molmil
Crystal Structure of Active Site Mutant C55A of Nitrile Reductase QueF, Bound to Substrate PreQ0
分子名称: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, CALCIUM ION, ...
著者Stec, B, Swairjo, M.A.
登録日2012-06-04
公開日2012-07-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.498 Å)
主引用文献Structural basis of biological nitrile reduction.
J.Biol.Chem., 287, 2012
7U07
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Crystal structure of queuine salvage enzyme DUF2419, apo form
分子名称: Queuine salvage enzyme DUF2419
著者Hung, S.-H, Swairjo, M.A.
登録日2022-02-17
公開日2022-12-21
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U1O
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Crystal structure of queuine salvage enzyme DUF2419 complexed with queuosine
分子名称: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, DI(HYDROXYETHYL)ETHER, MALONATE ION, ...
著者Hung, S.-H, Swairjo, M.A.
登録日2022-02-21
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U5A
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Crystal structure of queuine salvage enzyme DUF2419 mutant K199C, complexed with queuosine
分子名称: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, MALONATE ION, Queuine salvage enzyme DUF2419
著者Hung, S.-H, Swairjo, M.A.
登録日2022-03-01
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7UI4
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BU of 7ui4 by Molmil
Crystal structure of the DNA preQ0 insertase DpdA
分子名称: DNA-guanine transglycosylase, ZINC ION
著者Hung, S.-H, Swairjo, M.A.
登録日2022-03-28
公開日2023-02-22
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献7-Deazaguanines in DNA: functional and structural elucidation of a DNA modification system.
Nucleic Acids Res., 51, 2023
7UK3
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Crystal structure of queuine salvage enzyme DUF2419, wild-type (non-His6x tagged)
分子名称: Queuosine salvage protein DUF2419
著者Hung, S.-H, Swairjo, M.A.
登録日2022-03-31
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U91
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Crystal structure of queuine salvage enzyme DUF2419, in complex with queuosine-5'-monophosphate
分子名称: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-(5-O-phosphono-beta-D-ribofuranosyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, AMMONIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Hung, S.-H, Swairjo, M.A.
登録日2022-03-09
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023

 

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