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PDB: 216 件
6LS1
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BU of 6ls1 by Molmil
Ribonuclease from Hericium erinaceus active and GMP binding form
分子名称: DI(HYDROXYETHYL)ETHER, GUANOSINE, Ribonuclease T1, ...
著者Takebe, K, Suzuki, M, Sangawa, T, Kobayashi, H, Itagaki, T.
登録日2020-01-16
公開日2021-01-20
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Ribonuclease from Hericium erinaceus active and GMP binding form
To Be Published
5SW0
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BU of 5sw0 by Molmil
Thaumatin Structure at pH 4.0
分子名称: PHOSPHATE ION, Thaumatin I
著者Masuda, T, Okubo, K, Suzuki, M, Mikami, B.
登録日2016-08-08
公開日2017-08-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.269 Å)
主引用文献Thaumatin Structure at pH 4.0
To Be Published
5SW1
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BU of 5sw1 by Molmil
Thaumatin Structure at pH 6.0
分子名称: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID, Thaumatin I
著者Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B.
登録日2016-08-08
公開日2017-08-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Thaumatin Structure at pH 6.0
To Be Published
5SW2
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BU of 5sw2 by Molmil
Thaumatin Structure at pH 6.0, orthorhombic type1
分子名称: GLYCEROL, Thaumatin I
著者Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B.
登録日2016-08-08
公開日2017-08-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Thaumatin Structure at pH 6.0, orthorhombic type1
To Be Published
7XGI
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BU of 7xgi by Molmil
COMT SAH Mg opicapone complex
分子名称: Catechol O-methyltransferase, MAGNESIUM ION, Opicapone, ...
著者Takebe, K, Kuwada-Kusunose, T, Suzuki, M, Iijima, H.
登録日2022-04-04
公開日2023-04-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and Computational Analyses of the Unique Interactions of Opicapone in the Binding Pocket of Catechol O -Methyltransferase: A Crystallographic Study and Fragment Molecular Orbital Analyses.
J.Chem.Inf.Model., 63, 2023
7XJB
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BU of 7xjb by Molmil
Rat-COMT, opicapone,SAM and Mg bond
分子名称: CHLORIDE ION, Catechol O-methyltransferase, MAGNESIUM ION, ...
著者Takebe, K, Iijima, H, Suzuki, M, Kuwada-Kusunose, T.
登録日2022-04-15
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural and Computational Analyses of the Unique Interactions of Opicapone in the Binding Pocket of Catechol O -Methyltransferase: A Crystallographic Study and Fragment Molecular Orbital Analyses.
J.Chem.Inf.Model., 63, 2023
1WR6
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BU of 1wr6 by Molmil
Crystal structure of GGA3 GAT domain in complex with ubiquitin
分子名称: ADP-ribosylation factor binding protein GGA3, ubiquitin
著者Kawasaki, M, Shiba, T, Shiba, Y, Yamaguchi, Y, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Kato, K, Nakayama, K, Wakatsuki, S.
登録日2004-10-12
公開日2005-06-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Molecular mechanism of ubiquitin recognition by GGA3 GAT domain.
Genes Cells, 10, 2005
1O3X
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BU of 1o3x by Molmil
Crystal structure of human GGA1 GAT domain
分子名称: ADP-ribosylation factor binding protein GGA1
著者Shiba, T, Kawasaki, M, Takatsu, H, Nogi, T, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Nakayama, K, Wakatsuki, S.
登録日2003-05-08
公開日2003-05-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular Mechanism of Membrane Recruitment of Gga by Arf in Lysosomal Protein Transport
Nat.Struct.Biol., 10, 2003
1O3Y
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BU of 1o3y by Molmil
Crystal structure of mouse ARF1 (delta17-Q71L), GTP form
分子名称: ADP-ribosylation factor 1, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
著者Shiba, T, Kawasaki, M, Takatsu, H, Nogi, T, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Nakayama, K, Wakatsuki, S.
登録日2003-05-08
公開日2003-05-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport
Nat.Struct.Biol., 10, 2003
2GCC
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BU of 2gcc by Molmil
SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE
分子名称: ATERF1
著者Allen, M.D, Yamasaki, K, Ohme-Takagi, M, Tateno, M, Suzuki, M.
登録日1998-03-13
公開日1999-03-23
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA.
EMBO J., 17, 1998
1GCC
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BU of 1gcc by Molmil
SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE
分子名称: DNA (5'-D(*GP*CP*TP*GP*GP*CP*GP*GP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*CP*CP*GP*CP*CP*AP*GP*C)-3'), ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
著者Yamasaki, K, Allen, M.D, Ohme-Takagi, M, Tateno, M, Suzuki, M.
登録日1998-03-13
公開日1999-03-23
最終更新日2024-10-23
実験手法SOLUTION NMR
主引用文献A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA.
EMBO J., 17, 1998
8K6T
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BU of 8k6t by Molmil
The minor pilin structure of FctB3 in Streptococcus
分子名称: FctB3, GLYCEROL
著者Takebe, K, Sangawa, T, Suzuki, M, Nakata, M.
登録日2023-07-25
公開日2023-12-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Analysis of FctB3 crystal structure and insight into its structural stabilization and pilin linkage mechanisms.
Arch.Microbiol., 206, 2023
8JZ8
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BU of 8jz8 by Molmil
Subatomic structure of orthorhombic thaumatin at 0.89 Angstroms
分子名称: DI(HYDROXYETHYL)ETHER, Thaumatin I
著者Masuda, T, Suzuki, M, Yamasaki, M, Mikami, B.
登録日2023-07-04
公開日2024-05-15
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Subatomic structure of orthorhombic thaumatin at 0.89 angstrom reveals that highly flexible conformations are crucial for thaumatin sweetness.
Biochem.Biophys.Res.Commun., 703, 2024
1WZV
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BU of 1wzv by Molmil
Crystal Structure of UbcH8
分子名称: Ubiquitin-conjugating enzyme E2 L6
著者Mizushima, T, Suzuki, M, Teshima, N, Yamane, T, Murata, S, Tanaka, K.
登録日2005-03-10
公開日2005-03-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of UbcH8
To be Published
1WZW
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BU of 1wzw by Molmil
Crystal Structure of UbcH8
分子名称: Ubiquitin-conjugating enzyme E2 L6
著者Mizushima, T, Suzuki, M, Teshima, N, Yamane, T, Murata, S, Tanaka, K.
登録日2005-03-10
公開日2005-03-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of UbcH8
To be Published
1MP9
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BU of 1mp9 by Molmil
TBP from a mesothermophilic archaeon, Sulfolobus acidocaldarius
分子名称: TATA-binding protein
著者Koike, H, Kawashima-Ohya, Y, Yamasaki, T, Clowney, L, Katsuya, Y, Suzuki, M.
登録日2002-09-12
公開日2003-11-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Origins of Protein Stability Revealed by Comparing Crystal Structures of TATA Binding Proteins.
Structure, 12, 2004
5D4H
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BU of 5d4h by Molmil
High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography
分子名称: ACETIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
著者Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-08-07
公開日2016-03-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4J
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BU of 5d4j by Molmil
Chloride-bound form of a copper nitrite reductase from Alcaligenes faecals
分子名称: ACETIC ACID, CHLORIDE ION, COPPER (II) ION, ...
著者Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-08-07
公開日2016-03-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4I
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BU of 5d4i by Molmil
Intact nitrite complex of a copper nitrite reductase determined by serial femtosecond crystallography
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
著者Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-08-07
公開日2016-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7A
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BU of 5f7a by Molmil
Nitrite complex structure of copper nitrite reductase from Alcaligenes faecalis determined at 293 K
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
著者Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-12-07
公開日2016-03-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7B
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BU of 5f7b by Molmil
Resting state structure of CuNiR form Alcaligenes faecalis determined at 293 K
分子名称: COPPER (II) ION, Copper-containing nitrite reductase
著者Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-12-07
公開日2016-03-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
2F08
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BU of 2f08 by Molmil
Crystal structure of a major house dust mite allergen, Derf 2
分子名称: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL, mite allergen Der f II
著者Mikami, B, Tanaka, Y, Minato, N, Suzuki, M, Korematsu, S.
登録日2005-11-12
公開日2005-11-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure and some properties of a major house dust mite allergen, Derf 2
Biochem.Biophys.Res.Commun., 339, 2006
2HI7
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BU of 2hi7 by Molmil
Crystal structure of DsbA-DsbB-ubiquinone complex
分子名称: Disulfide bond formation protein B, Thiol:disulfide interchange protein dsbA, UBIQUINONE-1, ...
著者Inaba, K, Murakami, S, Suzuki, M, Nakagawa, A, Yamashita, E, Okada, K, Ito, K.
登録日2006-06-29
公開日2006-12-05
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Crystal Structure of the DsbB-DsbA Complex Reveals a Mechanism of Disulfide Bond Generation
Cell(Cambridge,Mass.), 127, 2006
2K7W
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BU of 2k7w by Molmil
BAX Activation is Initiated at a Novel Interaction Site
分子名称: Apoptosis regulator BAX, Bcl-2-like protein 11
著者Gavathiotis, E, Suzuki, M, Davis, M.L, Pitter, K, Bird, G.H, Katz, S.G, Tu, H.C, Kim, H, Cheng, E.H, Tjandra, N, Walensky, L.D.
登録日2008-08-27
公開日2008-10-21
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献BAX activation is initiated at a novel interaction site.
Nature, 455, 2008
2E1A
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BU of 2e1a by Molmil
crystal structure of FFRP-DM1
分子名称: 75aa long hypothetical regulatory protein AsnC, SELENOMETHIONINE
著者Koike, H, Suzuki, M.
登録日2006-10-19
公開日2007-09-18
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Structural Code for Discriminating between Transcription Signals Revealed by the Feast/Famine Regulatory Protein DM1 in Complex with Ligands
Structure, 15, 2007

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