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PDB: 112 件
1KFX
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Crystal Structure of Human m-Calpain Form I
分子名称: M-CALPAIN LARGE SUBUNIT, M-CALPAIN SMALL SUBUNIT
著者Strobl, S, Fernandez-Catalan, C, Braun, M, Huber, R, Masumoto, H, Nakagawa, K, Irie, A, Sorimachi, H, Bourenkow, G, Bartunik, H, Suzuki, K, Bode, W.
登録日2001-11-23
公開日2001-12-07
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium.
Proc.Natl.Acad.Sci.USA, 97, 2000
1KFU
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Crystal Structure of Human m-Calpain Form II
分子名称: M-CALPAIN LARGE SUBUNIT, M-CALPAIN SMALL SUBUNIT
著者Strobl, S, Fernandez-Catalan, C, Braun, M, Huber, R, Masumoto, H, Nakagawa, K, Irie, A, Sorimachi, H, Bourenkow, G, Bartunik, H, Suzuki, K, Bode, W.
登録日2001-11-23
公開日2001-12-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium.
Proc.Natl.Acad.Sci.USA, 97, 2000
1WYE
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Crystal structure of 2-keto-3-deoxygluconate kinase (form 1) from Sulfolobus Tokodaii
分子名称: 2-keto-3-deoxygluconate kinase
著者Toyoda, T, Suzuki, K, Hossain, M.T, Koike, I, Sekiguchi, T, Takenaka, A.
登録日2005-02-12
公開日2006-07-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus Tokodaii
To be Published
1WYD
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Crystal Structure of Aspartyl-tRNA synthetase from Sulfolobus tokodaii
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, SULFATE ION, ...
著者Maeda, Y, Hossain, M.T, Ubukata, S, Suzuki, K, Sekiguchi, T, Takenaka, A.
登録日2005-02-12
公開日2006-07-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the nondiscriminating aspartyl-tRNA synthetase from the crenarchaeon Sulfolobus tokodaii strain 7 reveals the recognition mechanism for two different tRNA anticodons
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
7DQD
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Crystal structure of the AMP-PNP-bound mutant A(S23C)3B(N64C)3 complex from enterococcus hirae V-ATPase
分子名称: GLYCEROL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Maruyama, S, Suzuki, K, Mizutani, K, Imai, F.L, Ishizuka-Katsura, Y, Shirouzu, M, Murata, T.
登録日2020-12-23
公開日2021-12-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.383 Å)
主引用文献The combination of high-speed AFM and X-ray crystallography reveals rotary catalysis
To Be Published
7DQE
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Crystal structure of the ADP-bound mutant A(S23C)3B(N64C)3 complex from enterococcus hirae V-ATPase
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ...
著者Maruyama, S, Nakamoto, K, Suzuki, K, Mizutani, K, Imai, F.L, Ishizuka-Katsura, Y, Shirouzu, M, Murata, T.
登録日2020-12-23
公開日2021-12-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.694 Å)
主引用文献The Combination of High-Speed AFM and X-ray Crystallography Reveals Rotary Catalytic Mechanism of Shaftless V1-ATPase
To Be Published
2DTM
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Thermodynamic and structural analyses of hydrolytic mechanism by catalytic antibodies
分子名称: IMMUNOGLOBULIN 6D9
著者Oda, M, Ito, N, Tsumuraya, T, Suzuki, K, Fujii, I.
登録日2006-07-13
公開日2007-05-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
J.Mol.Biol., 369, 2007
7DQC
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BU of 7dqc by Molmil
Crystal structure of nucleotide-free mutant A(S23C)3B(N64C)3 complex from Enterococcus hirae V-ATPase
分子名称: GLYCEROL, V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B
著者Maruyama, S, Suzuki, K, Mizutani, K, Imai, F.L, Ishizuka-Katsura, Y, Shirouzu, M, Murata, M.
登録日2020-12-23
公開日2021-12-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.706 Å)
主引用文献The combination of high-speed AFM and X-ray crystallography reveals rotary catalytic mechanism of shaftless V1-ATPase
To Be Published
4G1R
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Crystal structure of anti-HIV actinohivin in complex with alphs-1,2-mannobiose (Form II)
分子名称: Actinohivin, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
著者Hoque, M.M, Suzuki, K, Tsunoda, M, Jiang, J, Zhang, F, Takahashi, A, Naomi, O, Zhang, X, Sekiguchi, T, Tanaka, H, Omura, S, Takenaka, A.
登録日2012-07-11
公開日2013-07-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Matured structure of anti-HIV lectin actinohivin in complex with alpha-1,2-mannobiose
To be Published
4IJ0
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Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing transition mutation
分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*CP*GP*CP*G)-3'), STRONTIUM ION
著者Zhang, F, Suzuki, K, Tsunoda, M, Wilkinson, O, Millington, C.L, Williams, D.M, Morishita, E.C, Takenaka, A.
登録日2012-12-20
公開日2013-05-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing pyrimidine transition mutations
Nucleic Acids Res., 41, 2013
4ITD
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BU of 4itd by Molmil
Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing transition mutation
分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*(C6G)P*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
著者Zhang, F, Suzuki, K, Tsunoda, M, Wilkinson, O, Millington, C.L, Williams, D.M, Morishita, E.C, Takenaka, A.
登録日2013-01-18
公開日2013-05-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing pyrimidine transition mutations
Nucleic Acids Res., 41, 2013
2E2F
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BU of 2e2f by Molmil
Solution structure of DSP
分子名称: Diapausin
著者Kouno, T, Mizuguchi, M, Suzuki, K, Kawano, K.
登録日2006-11-12
公開日2007-11-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The structure of a novel insect peptide explains its Ca2+ channel blocking and antifungal activities
Biochemistry, 46, 2007
4O5Y
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BU of 4o5y by Molmil
O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine
分子名称: BARIUM ION, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), POTASSIUM ION
著者Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A.
登録日2013-12-20
公開日2014-07-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine
Acta Crystallogr.,Sect.D, 70, 2014
6IIE
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BU of 6iie by Molmil
Crystal structure of human diacylglycerol kinase alpha EF-hand domains bound to Ca2+
分子名称: CALCIUM ION, Diacylglycerol kinase alpha, GLYCEROL, ...
著者Takahashi, D, Suzuki, K, Sakamoto, T, Iwamoto, T, Murata, T, Sakane, F.
登録日2018-10-04
公開日2019-02-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.142 Å)
主引用文献Crystal structure and calcium-induced conformational changes of diacylglycerol kinase alpha EF-hand domains.
Protein Sci., 28, 2019
1V28
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Solution structure of paralytic peptide of the wild Silkmoth, Antheraea yamamai
分子名称: Paralytic Peptide
著者Kawaguchi, K, Ying, A, Suzuki, K, Kumaki, Y, Demura, M, Nitta, K.
登録日2003-10-09
公開日2004-10-26
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structural characterization of paralytic peptide of the wild Silkmoth Antheraea yamamai by NMR
To be Published
1V5B
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The Structure Of The Mutant, S225A and E251L, Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans
分子名称: 3-isopropylmalate dehydrogenase, SULFATE ION
著者Fujita, K, Minami, H, Suzuki, K, Tsunoda, M, Sekiguchi, T, Mizui, R, Tsuzaki, S, Nakamura, S, Takenaka, A.
登録日2003-11-22
公開日2005-02-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Crystal structure of a highly thermo-stabilized mutant of 3-isopropylmalate dehydrogenase from Bacillus coagulans: An evaluation of local packing density in the hydrophobic core
To be Published
1JEH
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CRYSTAL STRUCTURE OF YEAST E3, LIPOAMIDE DEHYDROGENASE
分子名称: DIHYDROLIPOAMIDE DEHYDROGENASE, FLAVIN-ADENINE DINUCLEOTIDE
著者Toyoda, T, Suzuki, K, Sekigushi, T, Reed, J, Takenaka, A.
登録日2001-06-18
公開日2001-07-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of eucaryotic E3, lipoamide dehydrogenase from yeast.
J.Biochem., 123, 1998
1V53
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The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans
分子名称: 3-isopropylmalate dehydrogenase
著者Fujita, K, Minami, H, Suzuki, K, Tsunoda, M, Sekiguchi, T, Mizui, R, Tsuzaki, S, Nakamura, S, Takenaka, A.
登録日2003-11-20
公開日2005-02-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans
To be Published
2CUY
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BU of 2cuy by Molmil
Crystal structure of malonyl CoA-acyl carrier protein transacylase from Thermus thermophilus HB8
分子名称: Malonyl CoA-[acyl carrier protein] transacylase
著者Misaki, S, Suzuki, K, Kunishima, N, Sugawara, M, Kuroishi, C, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-31
公開日2006-06-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of malonyl CoA-acyl carrier protein transacylase from Thermus thermophilus HB8
TO BE PUBLISHED
2DJI
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Crystal Structure of Pyruvate Oxidase from Aerococcus viridans containing FAD
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Pyruvate oxidase, SULFATE ION
著者Juan, E.C.M, Hossain, M.T, Suzuki, K, Yamamoto, T, Imamura, S, Sekiguchi, T, Takenaka, A.
登録日2006-04-03
公開日2007-05-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis.
Acta Crystallogr.,Sect.F, 63, 2007
4O5X
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O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine.
分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION
著者Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A.
登録日2013-12-20
公開日2014-07-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine
Acta Crystallogr.,Sect.D, 70, 2014
4O5W
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O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine
分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION, ...
著者Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A.
登録日2013-12-20
公開日2014-07-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine
Acta Crystallogr.,Sect.D, 70, 2014
4O5Z
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O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine
分子名称: BARIUM ION, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), SODIUM ION
著者Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A.
登録日2013-12-20
公開日2014-07-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine
Acta Crystallogr.,Sect.D, 70, 2014
5B4V
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Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and an inhibitor methylmalonate
分子名称: 3-hydroxybutyrate dehydrogenase, CHLORIDE ION, METHYLMALONIC ACID, ...
著者Kanazawa, H, Tsunoda, M, Hoque, M.M, Suzuki, K, Yamamoto, T, Takenaka, A.
登録日2016-04-19
公開日2016-08-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase
Acta Crystallogr.,Sect.F, 72, 2016
5B4T
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Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and a substrate D-3-hydroxybutyrate
分子名称: (3R)-3-hydroxybutanoic acid, 3-hydroxybutyrate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Kanazawa, H, Tsunoda, M, Hoque, M.M, Suzuki, K, Yamamoto, T, Takenaka, A.
登録日2016-04-19
公開日2016-08-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase
Acta Crystallogr.,Sect.F, 72, 2016

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