5LU0
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![BU of 5lu0 by Molmil](/molmil-images/mine/5lu0) | Crystal structure of H. pylori referent strain in complex with PO4 | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PHOSPHATE ION, ... | Authors: | Stefanic, Z. | Deposit date: | 2016-09-07 | Release date: | 2017-09-20 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.73 Å) | Cite: | Helicobacter pylori purine nucleoside phosphorylase shows new distribution patterns of open and closed active site conformations and unusual biochemical features. FEBS J., 285, 2018
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3UT6
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![BU of 3ut6 by Molmil](/molmil-images/mine/3ut6) | Crystal structure of E. Coli PNP complexed with PO4 and formycin A | Descriptor: | (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol, PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type | Authors: | Stefanic, Z. | Deposit date: | 2011-11-25 | Release date: | 2012-05-23 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.895 Å) | Cite: | New phosphate binding sites in the crystal structure of Escherichia coli purine nucleoside phosphorylase complexed with phosphate and formycin A. Febs Lett., 586, 2012
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4TTA
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![BU of 4tta by Molmil](/molmil-images/mine/4tta) | Crystal structure of double mutant E. Coli purine nucleoside phosphorylase with 2 FMC molecules | Descriptor: | (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol, PHOSPHATE ION, Purine nucleoside phosphorylase DeoD-type, ... | Authors: | Stefanic, Z, Bzowska, A. | Deposit date: | 2014-06-20 | Release date: | 2015-07-08 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis. Sci Rep, 8, 2018
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4TS9
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![BU of 4ts9 by Molmil](/molmil-images/mine/4ts9) | |
4TTJ
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![BU of 4ttj by Molmil](/molmil-images/mine/4ttj) | Crystal structure of double mutant E. Coli purine nucleoside phosphorylase with 6 FMC molecules | Descriptor: | (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol, PHOSPHATE ION, Purine nucleoside phosphorylase DeoD-type, ... | Authors: | Stefanic, Z, Bzowska, A. | Deposit date: | 2014-06-21 | Release date: | 2015-07-08 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.874 Å) | Cite: | Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis. Sci Rep, 8, 2018
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4TTI
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![BU of 4tti by Molmil](/molmil-images/mine/4tti) | Crystal structure of double mutant E. Coli purine nucleoside phosphorylase with 4 FMC molecules | Descriptor: | (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol, PHOSPHATE ION, Purine nucleoside phosphorylase DeoD-type, ... | Authors: | Stefanic, Z, Bzowska, A. | Deposit date: | 2014-06-21 | Release date: | 2015-07-08 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.89 Å) | Cite: | Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis. Sci Rep, 8, 2018
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4TS3
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![BU of 4ts3 by Molmil](/molmil-images/mine/4ts3) | |
5MX8
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![BU of 5mx8 by Molmil](/molmil-images/mine/5mx8) | |
5MX6
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![BU of 5mx6 by Molmil](/molmil-images/mine/5mx6) | |
6F4X
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![BU of 6f4x by Molmil](/molmil-images/mine/6f4x) | |
6G7X
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![BU of 6g7x by Molmil](/molmil-images/mine/6g7x) | |
5MAL
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![BU of 5mal by Molmil](/molmil-images/mine/5mal) | |
5MX4
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![BU of 5mx4 by Molmil](/molmil-images/mine/5mx4) | |
6F52
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![BU of 6f52 by Molmil](/molmil-images/mine/6f52) | |
6F4W
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![BU of 6f4w by Molmil](/molmil-images/mine/6f4w) | Crystal structure of H. pylori purine nucleoside phosphorylase in complex with formycin A | Descriptor: | (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol, Purine nucleoside phosphorylase DeoD-type | Authors: | Stefanic, Z. | Deposit date: | 2017-11-30 | Release date: | 2018-02-14 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.293 Å) | Cite: | Helicobacter pylori purine nucleoside phosphorylase shows new distribution patterns of open and closed active site conformations and unusual biochemical features. FEBS J., 285, 2018
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6F5I
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![BU of 6f5i by Molmil](/molmil-images/mine/6f5i) | Crystal structure of H. pylori purine nucleoside phosphorylase | Descriptor: | METHANOL, Purine nucleoside phosphorylase DeoD-type | Authors: | Stefanic, Z. | Deposit date: | 2017-12-01 | Release date: | 2018-02-14 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.298 Å) | Cite: | Helicobacter pylori purine nucleoside phosphorylase shows new distribution patterns of open and closed active site conformations and unusual biochemical features. FEBS J., 285, 2018
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6F5A
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![BU of 6f5a by Molmil](/molmil-images/mine/6f5a) | Crystal structure of H. pylori purine nucleoside phosphorylase | Descriptor: | Purine nucleoside phosphorylase DeoD-type | Authors: | Stefanic, Z. | Deposit date: | 2017-12-01 | Release date: | 2018-02-14 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.201 Å) | Cite: | Helicobacter pylori purine nucleoside phosphorylase shows new distribution patterns of open and closed active site conformations and unusual biochemical features. FEBS J., 285, 2018
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6ZXQ
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![BU of 6zxq by Molmil](/molmil-images/mine/6zxq) | Adenylosuccinate Synthetase from H. pylori in complex with HDA, GDP, IMO, Mg | Descriptor: | 6-O-PHOSPHORYL INOSINE MONOPHOSPHATE, Adenylosuccinate synthetase, GUANOSINE-5'-DIPHOSPHATE, ... | Authors: | Bubic, A, Stefanic, Z. | Deposit date: | 2020-07-30 | Release date: | 2021-08-11 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | The pursuit of new alternative ways to eradicate Helicobacter pylori continues: Detailed characterization of interactions in the adenylosuccinate synthetase active site Int.J.Biol.Macromol., 2023
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3EIV
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![BU of 3eiv by Molmil](/molmil-images/mine/3eiv) | |
7OOZ
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![BU of 7ooz by Molmil](/molmil-images/mine/7ooz) | Purine nucleoside phosphorylase(DeoD-type) from H. pylori with 6-benzyloxo-2-chloropurine | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-benzyloxo-2-chloropurine, GLYCEROL, ... | Authors: | Narczyk, M, Stefanic, Z. | Deposit date: | 2021-05-28 | Release date: | 2022-05-04 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Interactions of 2,6-substituted purines with purine nucleoside phosphorylase from Helicobacter pylori in solution and in the crystal, and the effects of these compounds on cell cultures of this bacterium. J Enzyme Inhib Med Chem, 37, 2022
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7OP9
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![BU of 7op9 by Molmil](/molmil-images/mine/7op9) | Purine nucleoside phosphorylase(DeoD-type) from H. pylori with 2,6-dichloropurine | Descriptor: | 2,6-bis(chloranyl)-7H-purine, IMIDAZOLE, MAGNESIUM ION, ... | Authors: | Narczyk, M, Stefanic, Z. | Deposit date: | 2021-05-31 | Release date: | 2022-05-04 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Interactions of 2,6-substituted purines with purine nucleoside phosphorylase from Helicobacter pylori in solution and in the crystal, and the effects of these compounds on cell cultures of this bacterium. J Enzyme Inhib Med Chem, 37, 2022
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7OPA
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![BU of 7opa by Molmil](/molmil-images/mine/7opa) | Purine nucleoside phosphorylase(DeoD-type) from H. pylori with 6-benzylthiopurine | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-benzylthio-2-chloropurine, GLYCEROL, ... | Authors: | Narczyk, M, Stefanic, Z. | Deposit date: | 2021-05-31 | Release date: | 2022-05-04 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Interactions of 2,6-substituted purines with purine nucleoside phosphorylase from Helicobacter pylori in solution and in the crystal, and the effects of these compounds on cell cultures of this bacterium. J Enzyme Inhib Med Chem, 37, 2022
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7OOY
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![BU of 7ooy by Molmil](/molmil-images/mine/7ooy) | Purine nucleoside phosphorylase(DeoD-type) from H. pylori with 6-benzylthio-2-chloropurine | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-benzylthio-2-chloropurine, GLYCEROL, ... | Authors: | Narczyk, M, Stefanic, Z. | Deposit date: | 2021-05-28 | Release date: | 2022-05-04 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Interactions of 2,6-substituted purines with purine nucleoside phosphorylase from Helicobacter pylori in solution and in the crystal, and the effects of these compounds on cell cultures of this bacterium. J Enzyme Inhib Med Chem, 37, 2022
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2NW6
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![BU of 2nw6 by Molmil](/molmil-images/mine/2nw6) | Burkholderia cepacia lipase complexed with S-inhibitor | Descriptor: | (1S)-1-(PHENOXYMETHYL)PROPYL METHYLPHOSPHONOCHLORIDOATE, CALCIUM ION, Lipase, ... | Authors: | Luic, M, Stefanic, Z. | Deposit date: | 2006-11-14 | Release date: | 2007-12-04 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Combined X-ray diffraction and QM/MM study of the Burkholderia cepacia lipase-catalyzed secondary alcohol esterification J.Phys.Chem.B, 112, 2008
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3OOH
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![BU of 3ooh by Molmil](/molmil-images/mine/3ooh) | Crystal structure of E. Coli purine nucleoside phosphorylase with PO4 | Descriptor: | PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type | Authors: | Mikleusevic, G, Stefanic, Z, Narzyk, M, Wielgus-Kutrowska, B, Bzowska, A, Luic, M. | Deposit date: | 2010-08-31 | Release date: | 2011-07-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Validation of the catalytic mechanism of Escherichia coli purine nucleoside phosphorylase by structural and kinetic studies. Biochimie, 93, 2011
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