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PDB: 162 results

1H5A
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STRUCTURE OF FERRIC HORSERADISH PEROXIDASE C1A IN COMPLEX WITH ACETATE
Descriptor: ACETATE ION, CALCIUM ION, PEROXIDASE C1A, ...
Authors:Berglund, G.I, Carlsson, G.H, Hajdu, J, Smith, A.T, Szoke, H, Henriksen, A.
Deposit date:2001-05-21
Release date:2002-06-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Catalytic Pathway of Horseradish Peroxidase at High Resolution
Nature, 417, 2002
1H5F
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X-ray induced reduction of horseradish peroxidase C1A Compound III (22-33% dose)
Descriptor: ACETATE ION, CALCIUM ION, HYDROGEN PEROXIDE, ...
Authors:Berglund, G.I, Carlsson, G.H, Hajdu, J, Smith, A.T, Szoke, H, Henriksen, A.
Deposit date:2001-05-21
Release date:2002-05-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Catalytic Pathway of Horseradish Peroxidase at High Resolution
Nature, 417, 2002
1H5J
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X-ray induced reduction of horseradish peroxidase C1A Compound III (67-78% dose)
Descriptor: ACETATE ION, CALCIUM ION, HYDROGEN PEROXIDE, ...
Authors:Berglund, G.I, Carlsson, G.H, Hajdu, J, Smith, A.T, Szoke, H, Henriksen, A.
Deposit date:2001-05-22
Release date:2002-05-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Catalytic Pathway of Horseradish Peroxidase at High Resolution
Nature, 417, 2002
1H5E
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BU of 1h5e by Molmil
X-ray induced reduction of horseradish peroxidase C1A Compound III (11-22% dose)
Descriptor: ACETATE ION, CALCIUM ION, PEROXIDASE C1A, ...
Authors:Berglund, G.I, Carlsson, G.H, Hajdu, J, Smith, A.T, Szoke, H, Henriksen, A.
Deposit date:2001-05-21
Release date:2002-05-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Catalytic Pathway of Horseradish Peroxidase at High Resolution
Nature, 417, 2002
1B80
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REC. LIGNIN PEROXIDASE H8 OXIDATIVELY PROCESSED
Descriptor: CALCIUM ION, PROTEIN (RECOMBINANT LIGNIN PEROXIDASE H8), PROTOPORPHYRIN IX CONTAINING FE
Authors:Blodig, W, Smith, A.T, Doyle, W.A, Piontek, K.
Deposit date:1999-02-03
Release date:1999-02-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structures of pristine and oxidatively processed lignin peroxidase expressed in Escherichia coli and of the W171F variant that eliminates the redox active tryptophan 171. Implications for the reaction mechanism.
J.Mol.Biol., 305, 2001
3AG5
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Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus
Descriptor: Pantothenate synthetase
Authors:Satoh, A, Konishi, S, Tamura, H, Stickland, H.G, Whitney, H.M, Smith, A.G, Matsumura, H, Inoue, T.
Deposit date:2010-03-19
Release date:2010-07-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus.
Biochemistry, 49, 2010
1H5H
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BU of 1h5h by Molmil
X-ray induced reduction of horseradish peroxidase C1A Compound III (44-56% dose)
Descriptor: ACETATE ION, CALCIUM ION, HYDROGEN PEROXIDE, ...
Authors:Berglund, G.I, Carlsson, G.H, Hajdu, J, Smith, A.T, Szoke, H, Henriksen, A.
Deposit date:2001-05-22
Release date:2002-06-21
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Catalytic Pathway of Horseradish Peroxidase at High Resolution
Nature, 417, 2002
9BA7
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Crystal structure of Vibrio cholerae N150T NFeoB variant with a single GDP molecule bound
Descriptor: CHLORIDE ION, Ferrous iron transport protein B, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Lee, M, Smith, A.T.
Deposit date:2024-04-03
Release date:2024-10-30
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structural determinants of Vibrio cholerae FeoB nucleotide promiscuity.
J.Biol.Chem., 300, 2024
7KKJ
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Structure of anti-SARS-CoV-2 Spike nanobody mNb6
Descriptor: CHLORIDE ION, SULFATE ION, Synthetic nanobody mNb6
Authors:Schoof, M.S, Faust, B.F, Saunders, R.A, Sangwan, S, Rezelj, V, Hoppe, N, Boone, M, Billesboelle, C.B, Puchades, C, Azumaya, C.M, Kratochvil, H.T, Zimanyi, M, Desphande, I, Liang, J, Dickinson, S, Nguyen, H.C, Chio, C.M, Merz, G.E, Thompson, M.C, Diwanji, D, Schaefer, K, Anand, A.A, Dobzinski, N, Zha, B.S, Simoneau, C.R, Leon, K, White, K.M, Chio, U.S, Gupta, M, Jin, M, Li, F, Liu, Y, Zhang, K, Bulkley, D, Sun, M, Smith, A.M, Rizo, A.N, Moss, F, Brilot, A.F, Pourmal, S, Trenker, R, Pospiech, T, Gupta, S, Barsi-Rhyne, B, Belyy, V, Barile-Hill, A.W, Nock, S, Liu, Y, Krogan, N.J, Ralston, C.Y, Swaney, D.L, Garcia-Sastre, A, Ott, M, Vignuzzi, M, Walter, P, Manglik, A, QCRG Structural Biology Consortium
Deposit date:2020-10-27
Release date:2020-11-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.
Science, 370, 2020
2XGB
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BU of 2xgb by Molmil
Crystal structure of Barley Beta-Amylase complexed with 2,3- epoxypropyl-alpha-D-glucopyranoside
Descriptor: (2R)-oxiran-2-ylmethyl alpha-D-glucopyranoside, 1,2-ETHANEDIOL, BETA-AMYLASE
Authors:Rejzek, M, Stevenson, C.E.M, Southard, A.M, Stanley, D, Denyer, K, Smith, A.M, Naldrett, M.J, Lawson, D.M, Field, R.A.
Deposit date:2010-06-02
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Chemical Genetics and Cereal Starch Metabolism: Structural Basis of the Non-Covalent and Covalent Inhibition of Barley Beta-Amylase.
Mol.Biosyst., 7, 2011
1TTK
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NMR solution structure of omega-conotoxin MVIIA, a N-type calcium channel blocker
Descriptor: Omega-conotoxin MVIIa
Authors:Adams, D.J, Smith, A.B, Schroeder, C.I, Yasuda, T, Lewis, R.J.
Deposit date:2004-06-22
Release date:2004-07-06
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:omega-conotoxin CVID inhibits a pharmacologically distinct voltage-sensitive calcium channel associated with transmitter release from preganglionic nerve terminals
J.Biol.Chem., 278, 2003
1TT3
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NMR soulution structure of omega-conotoxin [K10]MVIIA
Descriptor: Omega-conotoxin MVIIa
Authors:Adams, D.J, Smith, A.B, Schroeder, C.I, Yasuda, T, Lewis, R.J.
Deposit date:2004-06-21
Release date:2004-07-06
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:omega-conotoxin CVID inhibits a pharmacologically distinct voltage-sensitive calcium channel associated with transmitter release from preganglionic nerve terminals
J.Biol.Chem., 278, 2003
2BDO
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BU of 2bdo by Molmil
SOLUTION STRUCTURE OF HOLO-BIOTINYL DOMAIN FROM ACETYL COENZYME A CARBOXYLASE OF ESCHERICHIA COLI DETERMINED BY TRIPLE-RESONANCE NMR SPECTROSCOPY
Descriptor: BIOTIN, PROTEIN (ACETYL-COA CARBOXYLASE)
Authors:Roberts, E.L, Shu, N, Howard, M.J, Broadhurst, R.W, Chapman-Smith, A, Wallace, J.C, Morris, T, Cronan, J.E, Perham, R.N.
Deposit date:1999-03-03
Release date:1999-04-27
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Solution structures of apo and holo biotinyl domains from acetyl coenzyme A carboxylase of Escherichia coli determined by triple-resonance nuclear magnetic resonance spectroscopy.
Biochemistry, 38, 1999
3AG6
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BU of 3ag6 by Molmil
Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus in complex with pantoyl adenylate
Descriptor: ACETIC ACID, PANTOYL ADENYLATE, Pantothenate synthetase, ...
Authors:Satoh, A, Konishi, S, Tamura, H, Stickland, H.G, Whitney, H.M, Smith, A.G, Matsumura, H, Inoue, T.
Deposit date:2010-03-19
Release date:2010-07-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus.
Biochemistry, 49, 2010
2XFR
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BU of 2xfr by Molmil
Crystal structure of barley beta-amylase at atomic resolution
Descriptor: 1,2-ETHANEDIOL, BETA-AMYLASE
Authors:Rejzek, M, Stevenson, C.E.M, Southard, A.M, Stanley, D, Denyer, K, Smith, A.M, Naldrett, M.J, Lawson, D.M, Field, R.A.
Deposit date:2010-05-28
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Chemical Genetics and Cereal Starch Metabolism: Structural Basis of the Non-Covalent and Covalent Inhibition of Barley Beta-Amylase.
Mol.Biosyst., 7, 2011
1RW4
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BU of 1rw4 by Molmil
Nitrogenase Fe protein l127 deletion variant
Descriptor: GLYCEROL, IRON/SULFUR CLUSTER, Nitrogenase iron protein 1
Authors:Sen, S, Igarashi, R, Smith, A, Johnson, M.K, Seefeldt, L.C, Peters, J.W.
Deposit date:2003-12-15
Release date:2004-03-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Conformational Mimic of the MgATP-Bound "On State" of the Nitrogenase Iron Protein.
Biochemistry, 43, 2004
4KKD
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BU of 4kkd by Molmil
The X-ray crystal structure of Mannose-binding lectin-associated serine proteinase-3 reveals the structural basis for enzyme inactivity associated with the 3MC syndrome
Descriptor: IMIDAZOLE, Mannan-binding lectin serine protease 1
Authors:Yongqing, T, Wilmann, P.G, Reeve, S.B, Coetzer, T.H, Smith, A.I, Whisstock, J.C, Pike, R.N, Wijeyewickrema, L.C.
Deposit date:2013-05-05
Release date:2013-07-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.5991 Å)
Cite:The X-ray Crystal Structure of Mannose-binding Lectin-associated Serine Proteinase-3 Reveals the Structural Basis for Enzyme Inactivity Associated with the Carnevale, Mingarelli, Malpuech, and Michels (3MC) Syndrome.
J.Biol.Chem., 288, 2013
2XFF
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BU of 2xff by Molmil
Crystal structure of Barley Beta-Amylase complexed with acarbose
Descriptor: 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, BETA-AMYLASE
Authors:Rejzek, M, Stevenson, C.E.M, Southard, A.M, Stanley, D, Denyer, K, Smith, A.M, Naldrett, M.J, Lawson, D.M, Field, R.A.
Deposit date:2010-05-28
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.309 Å)
Cite:Chemical Genetics and Cereal Starch Metabolism: Structural Basis of the Non-Covalent and Covalent Inhibition of Barley Beta-Amylase.
Mol.Biosyst., 7, 2011
2XFY
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Crystal structure of Barley Beta-Amylase complexed with alpha- cyclodextrin
Descriptor: 1,2-ETHANEDIOL, BETA-AMYLASE, Cyclohexakis-(1-4)-(alpha-D-glucopyranose)
Authors:Rejzek, M, Stevenson, C.E.M, Southard, A.M, Stanley, D, Denyer, K, Smith, A.M, Naldrett, M.J, Lawson, D.M, Field, R.A.
Deposit date:2010-05-28
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.207 Å)
Cite:Chemical Genetics and Cereal Starch Metabolism: Structural Basis of the Non-Covalent and Covalent Inhibition of Barley Beta-Amylase.
Mol.Biosyst., 7, 2011
2XGI
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BU of 2xgi by Molmil
Crystal structure of Barley Beta-Amylase complexed with 3,4- epoxybutyl alpha-D-glucopyranoside
Descriptor: (3R)-3-hydroxybutyl alpha-D-glucopyranoside, (3S)-3-hydroxybutyl alpha-D-glucopyranoside, 1,2-ETHANEDIOL, ...
Authors:Rejzek, M, Stevenson, C.E.M, Southard, A.M, Stanley, D, Denyer, K, Smith, A.M, Naldrett, M.J, Lawson, D.M, Field, R.A.
Deposit date:2010-06-04
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Chemical genetics and cereal starch metabolism: structural basis of the non-covalent and covalent inhibition of barley beta-amylase.
Mol Biosyst, 7, 2011
2XG9
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Crystal structure of Barley Beta-Amylase complexed with 4-O-alpha-D- glucopyranosylmoranoline
Descriptor: 1,2-ETHANEDIOL, BETA-AMYLASE, alpha-D-glucopyranose-(1-4)-1-DEOXYNOJIRIMYCIN
Authors:Rejzek, M, Stevenson, C.E.M, Southard, A.M, Stanley, D, Denyer, K, Smith, A.M, Naldrett, M.J, Lawson, D.M, Field, R.A.
Deposit date:2010-06-02
Release date:2010-12-01
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Chemical Genetics and Cereal Starch Metabolism: Structural Basis of the Non-Covalent and Covalent Inhibition of Barley Beta-Amylase.
Mol.Biosyst., 7, 2011
7KKK
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SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Schoof, M.S, Faust, B.F, Saunders, R.A, Sangwan, S, Rezelj, V, Hoppe, N, Boone, M, Billesboelle, C.B, Puchades, C, Azumaya, C.M, Kratochvil, H.T, Zimanyi, M, Desphande, I, Liang, J, Dickinson, S, Nguyen, H.C, Chio, C.M, Merz, G.E, Thompson, M.C, Diwanji, D, Schaefer, K, Anand, A.A, Dobzinski, N, Zha, B.S, Simoneau, C.R, Leon, K, White, K.M, Chio, U.S, Gupta, M, Jin, M, Li, F, Liu, Y, Zhang, K, Bulkley, D, Sun, M, Smith, A.M, Rizo, A.N, Moss, F, Brilot, A.F, Pourmal, S, Trenker, R, Pospiech, T, Gupta, S, Barsi-Rhyne, B, Belyy, V, Barile-Hill, A.W, Nock, S, Liu, Y, Krogan, N.J, Ralston, C.Y, Swaney, D.L, Garcia-Sastre, A, Ott, M, Vignuzzi, M, Walter, P, Manglik, A, QCRG Structural Biology Consortium
Deposit date:2020-10-27
Release date:2020-11-11
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.
Science, 370, 2020
7KKL
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SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Schoof, M.S, Faust, B.F, Saunders, R.A, Sangwan, S, Rezelj, V, Hoppe, N, Boone, M, Billesboelle, C.B, Puchades, C, Azumaya, C.M, Kratochvil, H.T, Zimanyi, M, Desphande, I, Liang, J, Dickinson, S, Nguyen, H.C, Chio, C.M, Merz, G.E, Thompson, M.C, Diwanji, D, Schaefer, K, Anand, A.A, Dobzinski, N, Zha, B.S, Simoneau, C.R, Leon, K, White, K.M, Chio, U.S, Gupta, M, Jin, M, Li, F, Liu, Y, Zhang, K, Bulkley, D, Sun, M, Smith, A.M, Rizo, A.N, Moss, F, Brilot, A.F, Pourmal, S, Trenker, R, Pospiech, T, Gupta, S, Barsi-Rhyne, B, Belyy, V, Barile-Hill, A.W, Nock, S, Liu, Y, Krogan, N.J, Ralston, C.Y, Swaney, D.L, Garcia-Sastre, A, Ott, M, Vignuzzi, M, Walter, P, Manglik, A, QCRG Structural Biology Consortium
Deposit date:2020-10-27
Release date:2020-11-11
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.
Science, 370, 2020
4I0N
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BU of 4i0n by Molmil
Pore forming protein
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Necrotic enteritis toxin B
Authors:Yan, X, Porter, C.J, Hardy, S.P, Steer, D, Smith, A.I, Quinset, N, Hughes, V, Cheung, J.K, Keyburn, A.L, Kaldhusdal, M, Moore, R.J, Bannam, T.L, Whisstock, J.C, Rood, J.I.
Deposit date:2012-11-16
Release date:2013-03-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and functional analysis of the pore-forming toxin NetB from Clostridium perfringens
MBio, 4, 2013
4NYC
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Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, thiM TPP riboswitch, ...
Authors:Warner, K.D, Homan, P, Weeks, K.M, Smith, A.G, Abell, C, Ferre-D'Amare, A.R.
Deposit date:2013-12-10
Release date:2014-06-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Validating Fragment-Based Drug Discovery for Biological RNAs: Lead Fragments Bind and Remodel the TPP Riboswitch Specifically.
Chem.Biol., 21, 2014

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