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PDB: 347 results

4W8I
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Crystal structure of LpSPL/Lpp2128, Legionella pneumophila sphingosine-1 phosphate lyase
Descriptor: Probable sphingosine-1-phosphate lyase
Authors:Stogios, P.J, Daniels, C, Skarina, T, Cuff, M, Di Leo, R, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-08-24
Release date:2014-11-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Legionella pneumophila S1P-lyase targets host sphingolipid metabolism and restrains autophagy.
Proc.Natl.Acad.Sci.USA, 113, 2016
5JD8
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BU of 5jd8 by Molmil
Crystal structure of the serine endoprotease from Yersinia pestis
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, DI(HYDROXYETHYL)ETHER, Periplasmic serine peptidase DegS, ...
Authors:Filippova, E.V, Wawrzsak, Z, Sandoval, J, Skarina, T, Grimshaw, S, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-04-15
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the serine endoprotease from Yersinia pestis
To Be Published
2AF7
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BU of 2af7 by Molmil
Crystal structure of the gamma-carboxymuconolactone decarboxylase from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium target TT747.
Descriptor: gamma-carboxymuconolactone decarboxylase
Authors:Vorobiev, S.M, Kuzin, A, Skarina, T, Savchenko, A, Semesi, A, Arrowsmith, C, Edwards, A, Montelione, G.T, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-07-25
Release date:2005-08-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Crystal structure of the gamma-carboxymuconolactone decarboxylase from Methanobacterium thermoautotrophicum.
To be Published
3KBO
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BU of 3kbo by Molmil
2.14 Angstrom Crystal Structure of Putative Oxidoreductase (ycdW) from Salmonella typhimurium in Complex with NADP
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, Glyoxylate/hydroxypyruvate reductase A, ...
Authors:Minasov, G, Wawrzak, Z, Skarina, T, Onopriyenko, O, Papazisi, L, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-10-20
Release date:2009-10-27
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:2.14 Angstrom Crystal Structure of Putative Oxidoreductase (ycdW) from Salmonella typhimurium in Complex with NADP.
To be Published
3KHY
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BU of 3khy by Molmil
Crystal Structure of a propionate kinase from Francisella tularensis subsp. tularensis SCHU S4
Descriptor: Propionate kinase
Authors:Brunzelle, J.S, Skarina, T, Sharma, S, Wang, Y, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-10-31
Release date:2010-01-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.978 Å)
Cite:Crystal Structure of a propionate kinase from Francisella tularensis subsp. tularensis SCHU S4
To be Published
2AUW
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BU of 2auw by Molmil
Crystal Structure of Putative DNA Binding Protein NE0471 from Nitrosomonas europaea ATCC 19718
Descriptor: FORMIC ACID, GLYCEROL, hypothetical protein NE0471
Authors:Kim, Y, Joachimiak, A, Skarina, T, Savchenko, A, Edwards, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-08-29
Release date:2005-10-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of the Hypothetical Protein NE0471 from Nitrosomonas europaea
To be Published
6U83
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BU of 6u83 by Molmil
OmpA-like domain of FopA1 from Francisella tularensis subsp. tularensis SCHU S4
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, D-ALANINE, Outer membrane associated protein, ...
Authors:Michalska, K, Skarina, T, Stogios, P.J, Di Leo, R, Savchenko, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-09-04
Release date:2019-09-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3566 Å)
Cite:OmpA-like domain of FopA1 from Francisella tularensis subsp. tularensis SCHU S4
To Be Published
3C3J
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BU of 3c3j by Molmil
Crystal structure of tagatose-6-phosphate ketose/aldose isomerase from Escherichia coli
Descriptor: Putative tagatose-6-phosphate ketose/aldose isomerase
Authors:Zhang, R, Skarina, T, Egorova, O, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-01-28
Release date:2008-02-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structure of the tagatose-6-phosphate ketose/aldose isomerase from Escherichia coli.
To be Published
3BQY
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BU of 3bqy by Molmil
Crystal structure of a possible TetR family transcriptional regulator from Streptomyces coelicolor A3(2).
Descriptor: ACETIC ACID, PHOSPHATE ION, Putative TetR family transcriptional regulator
Authors:Cuff, M.E, Skarina, T, Kagan, O, Edwards, A.M, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-12-20
Release date:2008-01-15
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of a possible TetR family transcriptional regulator from Streptomyces coelicolor A3(2).
TO BE PUBLISHED
3C2B
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BU of 3c2b by Molmil
Crystal structure of TetR transcriptional regulator from Agrobacterium tumefaciens
Descriptor: FORMIC ACID, Transcriptional regulator, TetR family
Authors:Osipiuk, J, Skarina, T, Zheng, H, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-01-24
Release date:2008-02-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray crystal structure of TetR transcriptional regulator from Agrobacterium tumefaciens.
To be Published
2PPX
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BU of 2ppx by Molmil
Crystal structure of a HTH XRE-family like protein from Agrobacterium tumefaciens
Descriptor: GLYCEROL, SULFATE ION, Uncharacterized protein Atu1735
Authors:Cuff, M.E, Skarina, T, Onopriyenko, O, Edwards, A, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-04-30
Release date:2007-05-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a HTH XRE-family like protein from Agrobacterium tumefaciens.
TO BE PUBLISHED
2Q05
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BU of 2q05 by Molmil
Crystal structure of tyr/ser protein phosphatase from Vaccinia virus WR
Descriptor: Dual specificity protein phosphatase
Authors:Osipiuk, J, Skarina, T, Kagan, O, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-05-18
Release date:2007-06-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Crystal structure of tyr/ser protein phosphatase from Vaccinia virus WR.
To be Published
2Q16
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BU of 2q16 by Molmil
Structure of the E. coli inosine triphosphate pyrophosphatase RgdB in complex with ITP
Descriptor: CALCIUM ION, HAM1 protein homolog, INOSINE 5'-TRIPHOSPHATE, ...
Authors:Singer, A.U, Lam, R, Proudfoot, M, Skarina, T, Savchenko, A, Yakunin, A.F.
Deposit date:2007-05-23
Release date:2008-02-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Molecular basis of the antimutagenic activity of the house-cleaning inosine triphosphate pyrophosphatase RdgB from Escherichia coli.
J.Mol.Biol., 374, 2007
8SDC
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BU of 8sdc by Molmil
Crystal structure of fluoroacetate dehalogenase Daro3835 apoenzyme
Descriptor: Alpha/beta hydrolase fold protein, CHLORIDE ION
Authors:Stogios, P.J, Skarina, T, Khusnutdinova, A, Iakounine, A, Savchenko, A.
Deposit date:2023-04-06
Release date:2023-09-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural insights into hydrolytic defluorination of difluoroacetate by microbial fluoroacetate dehalogenases.
Febs J., 290, 2023
8SDD
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BU of 8sdd by Molmil
Crystal structure of fluoroacetate dehalogenase Daro3835 H274N mutant with D107-glycolyl intermediate
Descriptor: Alpha/beta hydrolase fold protein
Authors:Stogios, P.J, Skarina, T, Khusnutdinova, A, Iakounine, A, Savchenko, A.
Deposit date:2023-04-06
Release date:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into hydrolytic defluorination of difluoroacetate by microbial fluoroacetate dehalogenases.
Febs J., 290, 2023
4WZ2
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BU of 4wz2 by Molmil
Crystal structure of U-box 2 of LubX / LegU2 / Lpp2887 from Legionella pneumophila str. Paris, Ile175Met mutant
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase LubX, HEXANE-1,6-DIOL
Authors:Stogios, P.J, Qualie, A.T, Skarina, T, Nocek, B, Di Leo, R, Yim, V, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-11-18
Release date:2015-01-28
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (3.408 Å)
Cite:Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.
Structure, 23, 2015
4WZ3
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BU of 4wz3 by Molmil
Crystal structure of the complex between LubX/LegU2/Lpp2887 U-box 1 and Homo sapiens UBE2D2
Descriptor: E3 ubiquitin-protein ligase LubX, Ubiquitin-conjugating enzyme E2 D2
Authors:Stogios, P.J, Quaile, A.T, Skarina, T, Nocek, B, Di Leo, R, Yim, V, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-11-18
Release date:2015-01-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.
Structure, 23, 2015
4WZ0
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BU of 4wz0 by Molmil
Crystal structure of U-box 1 of LubX / LegU2 / Lpp2887 from Legionella pneumophila str. Paris
Descriptor: E3 ubiquitin-protein ligase LubX
Authors:Stogios, P.J, Quaile, A.T, Skarina, T, Stein, A, Di Leo, R, Yim, V, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-11-18
Release date:2015-01-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.954 Å)
Cite:Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.
Structure, 23, 2015
4XI1
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BU of 4xi1 by Molmil
Crystal structure of U-box 2 of LubX / LegU2 / Lpp2887 from Legionella pneumophila str. Paris, wild-type
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase LubX, GLYCEROL, ...
Authors:Stogios, P.J, Quaile, T, Skarina, T, Cuff, M, Di Leo, R, Yim, V, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-01-06
Release date:2015-01-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.983 Å)
Cite:Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.
Structure, 23, 2015
4OMV
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BU of 4omv by Molmil
Crystal Structure of a Putative Macrophage Growth Locus, subunit A From Francisella tularensis SCHU S4
Descriptor: Macrophage growth locus, subunit A
Authors:Brunzelle, J.S, Wawrzak, Z, Skarina, T, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-01-27
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal Structure of a Putative Macrophage Growth Locus, subunit A From Francisella tularensis SCHU S4
TO BE PUBLISHED
3BIG
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BU of 3big by Molmil
Crystal structure of the fructose-1,6-bisphosphatase GlpX from E.coli in complex with inorganic phosphate
Descriptor: Fructose-1,6-bisphosphatase class II glpX, PHOSPHATE ION, UNKNOWN ATOM OR ION
Authors:Lunin, V.V, Skarina, T, Brown, G, Yakunin, A.F, Edwards, A.M, Savchenko, A.
Deposit date:2007-11-30
Release date:2008-12-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and Biochemical Characterization of the Type II Fructose-1,6-bisphosphatase GlpX from Escherichia coli.
J.Biol.Chem., 284, 2009
3BIH
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BU of 3bih by Molmil
Crystal structure of fructose-1,6-bisphosphatase from E.coli GlpX
Descriptor: Fructose-1,6-bisphosphatase class II glpX, UNKNOWN ATOM OR ION
Authors:Lunin, V.V, Skarina, T, Brown, G, Yakunin, A.F, Edwards, A.M, Savchenko, A.
Deposit date:2007-11-30
Release date:2008-12-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Biochemical Characterization of the Type II Fructose-1,6-bisphosphatase GlpX from Escherichia coli.
J.Biol.Chem., 284, 2009
5KVR
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BU of 5kvr by Molmil
X-Ray Crystal Structure of a Fragment (1-75) of a Transcriptional Regulator PdhR from Escherichia coli CFT073
Descriptor: Pyruvate dehydrogenase complex repressor
Authors:Brunzelle, J.S, Wawrzak, Z, Sandoval, J, Skarina, T, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-07-15
Release date:2016-11-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:X-Ray Crystal Structure of a Fragment (1-75) of a Transcriptional Regulator PdhR from Escherichia coli CFT073
To Be Published
4R5Q
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BU of 4r5q by Molmil
Crystal structure and nuclease activity of the CRISPR-associated Cas4 protein Pcal_0546 from Pyrobaculum calidifontis containing a [2Fe-2S] cluster
Descriptor: CRISPR-associated exonuclease, Cas4 family, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Nocek, B, Skarina, T, Lemak, S, Brown, G, Savchenko, A, Joachimiak, A, Yakunin, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-08-21
Release date:2014-09-17
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure and nuclease activity of the CRISPR-associated Cas4 protein Pcal_0546 from Pyrobaculum calidifontis containing a [2Fe-2S] cluster
To be Published
7TQ1
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BU of 7tq1 by Molmil
Crystal structure of adaptive laboratory evolved sulfonamide-resistant Dihydropteroate Synthase (DHPS) from Escherichia coli in complex with 6-hydroxymethylpterin
Descriptor: 6-HYDROXYMETHYLPTERIN, Dihydropteroate synthase
Authors:Stogios, P.J, Skarina, T, Tan, K, Venkatesan, M, Fruci, M, Joachimiak, A, Savchenko, A, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID), Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2022-01-26
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Molecular mechanism of plasmid-borne resistance to sulfonamide antibiotics.
Nat Commun, 14, 2023

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