Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 140 results

7PD5
DownloadVisualize
BU of 7pd5 by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with 4-aminobenzoic acid
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-AMINOBENZOIC ACID, CHLORIDE ION, ...
Authors:Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2021-08-04
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with 4-aminobenzoic acid
To Be Published
7QIB
DownloadVisualize
BU of 7qib by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 in complex with UDP
Descriptor: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, MAGNESIUM ION, ...
Authors:Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2021-12-14
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 in complex with UDP
To Be Published
7QOQ
DownloadVisualize
BU of 7qoq by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 in complex with UMP and Magnesium
Descriptor: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, MAGNESIUM ION, ...
Authors:Silva, A, Barbosa Pereira, P.J, Macedo-Ribeiro, S, Costa, D.
Deposit date:2021-12-27
Release date:2023-01-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 in complex with UMP and Magnesium
To Be Published
5M2E
DownloadVisualize
BU of 5m2e by Molmil
Apo structure of Pseudomonas aeruginosa Isocitrate Dehydrogenase, ICD.
Descriptor: Isocitrate dehydrogenase [NADP]
Authors:Crousilles, A, Welch, M.
Deposit date:2016-10-12
Release date:2017-12-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Gluconeogenic precursor availability regulates flux through the glyoxylate shunt inPseudomonas aeruginosa.
J. Biol. Chem., 293, 2018
7PE4
DownloadVisualize
BU of 7pe4 by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with UDP-glucose
Descriptor: BICARBONATE ION, CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, ...
Authors:Silva, A, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2021-08-09
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with UDP-glucose
To Be Published
7P8G
DownloadVisualize
BU of 7p8g by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 - apo form
Descriptor: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, MALONATE ION, ...
Authors:Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2021-07-21
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 - apo form
To Be Published
7PDO
DownloadVisualize
BU of 7pdo by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with UDP
Descriptor: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, URIDINE-5'-DIPHOSPHATE
Authors:Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2021-08-05
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with UDP
To Be Published
7PVL
DownloadVisualize
BU of 7pvl by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 - apo form
Descriptor: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, MAGNESIUM ION
Authors:Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2021-10-04
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 - apo form
To Be Published
7QCP
DownloadVisualize
BU of 7qcp by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.2 - apo form
Descriptor: Glucosyl-3-phosphoglycerate synthase, L(+)-TARTARIC ACID
Authors:Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2021-11-25
Release date:2022-12-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.2 - apo form
To Be Published
7QI9
DownloadVisualize
BU of 7qi9 by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.2 in complex with UDP
Descriptor: Glucosyl-3-phosphoglycerate synthase, URIDINE-5'-DIPHOSPHATE
Authors:Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2021-12-14
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.2 in complex with UDP
To Be Published
7P5L
DownloadVisualize
BU of 7p5l by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.1 - apo form
Descriptor: (2S)-2-hydroxybutanedioic acid, D-MALATE, Glucosyl-3-phosphoglycerate synthase
Authors:Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2021-07-14
Release date:2023-01-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.1 - apo form
To Be Published
8P98
DownloadVisualize
BU of 8p98 by Molmil
BtuB3G3 bound to cyanocobalamin with ordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, Vitamin B12 transporter BtuB
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BLW
DownloadVisualize
BU of 8blw by Molmil
Vitamin B12 transporter BtuB1 with lipoprotein BtuG1 from B. theta
Descriptor: Vitamin B12 transporter BtuB1, YncE family protein, beta-D-galactopyranose
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2022-11-10
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8P97
DownloadVisualize
BU of 8p97 by Molmil
BtuB3G3 bound to cyanocobalamin with disordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, TonB-dependent receptor
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
7O3D
DownloadVisualize
BU of 7o3d by Molmil
Cooperation between the intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly
Descriptor: Transcription elongation factor SPT6
Authors:Kasiliauskaite, A, Kubicek, K, Klumpler, T, Zanova, M, Zapletal, D, Novacek, J, Stefl, R.
Deposit date:2021-04-01
Release date:2022-04-13
Last modified:2022-06-15
Method:ELECTRON MICROSCOPY (3.71 Å)
Cite:Cooperation between intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly.
Nucleic Acids Res., 50, 2022
7O6B
DownloadVisualize
BU of 7o6b by Molmil
Cooperation between the intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly
Descriptor: Transcription elongation factor SPT6
Authors:Kasiliauskaite, A, Kubicek, K, Klumpler, T, Zanova, M, Zapletal, D, Novacek, J, Stefl, R.
Deposit date:2021-04-09
Release date:2022-04-20
Last modified:2022-06-22
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Cooperation between intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly.
Nucleic Acids Res., 50, 2022
8BYT
DownloadVisualize
BU of 8byt by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
Descriptor: S-layer homology domain-containing protein
Authors:Silale, A, van den Berg, B.
Deposit date:2022-12-13
Release date:2023-11-08
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BZ2
DownloadVisualize
BU of 8bz2 by Molmil
Crystal structure of outer membrane attachment porin OmpM1 SLH domain
Descriptor: S-layer homology domain-containing protein, SULFATE ION
Authors:Silale, A, van den Berg, B.
Deposit date:2022-12-14
Release date:2023-11-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
1NBS
DownloadVisualize
BU of 1nbs by Molmil
Crystal structure of the specificity domain of Ribonuclease P RNA
Descriptor: LEAD (II) ION, MAGNESIUM ION, RIBONUCLEASE P RNA
Authors:Krasilnikov, A.S, Yang, X, Pan, T, Mondragon, A.
Deposit date:2002-12-03
Release date:2003-02-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Crystal structure of the specificity domain of Ribonuclease P
Nature, 421, 2003
8A8C
DownloadVisualize
BU of 8a8c by Molmil
T5 phage receptor-binding protein pb5 bound to ferrichrome transporter FhuA
Descriptor: Ferrichrome outer membrane transporter/phage receptor, Receptor-binding protein pb5, [(2R,3S,4R,5R,6R)-2-[[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-4-[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-2-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-carboxy-5-oxidanyl-oxan-2-yl]oxymethyl]-5-[[(3R)-3-dodecanoyloxytetradecanoyl]amino]-4-(3-nonanoyloxypropanoyloxy)-6-[[(2R,3S,4R,5R,6R)-3-oxidanyl-4-[(3S)-3-oxidanyltetradecanoyl]oxy-5-[[(3R)-3-oxidanyltridecanoyl]amino]-6-phosphonatooxy-oxan-2-yl]methoxy]oxan-3-yl] phosphate
Authors:Silale, A, van den Berg, B.
Deposit date:2022-06-22
Release date:2022-10-05
Last modified:2022-11-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for host recognition and superinfection exclusion by bacteriophage T5.
Proc.Natl.Acad.Sci.USA, 119, 2022
1U9S
DownloadVisualize
BU of 1u9s by Molmil
Crystal structure of the specificity domain of Ribonuclease P of the A-type
Descriptor: BARIUM ION, RIBONUCLEASE P
Authors:Krasilnikov, A.S, Xiao, Y, Pan, T, Mondragon, A.
Deposit date:2004-08-10
Release date:2004-10-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Basis for structural diversity in homologous RNAs.
Science, 306, 2004
8BYM
DownloadVisualize
BU of 8bym by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula
Descriptor: S-layer homology domain-containing protein
Authors:Silale, A, van den Berg, B.
Deposit date:2022-12-13
Release date:2023-11-08
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BYS
DownloadVisualize
BU of 8bys by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula, native
Descriptor: S-layer homology domain-containing protein
Authors:Silale, A, van den Berg, B.
Deposit date:2022-12-13
Release date:2023-11-08
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
1LU5
DownloadVisualize
BU of 1lu5 by Molmil
2.4 Angstrom Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex
Descriptor: 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3', CIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX
Authors:Silverman, A.P, Bu, W, Cohen, S.M, Lippard, S.J.
Deposit date:2002-05-21
Release date:2002-12-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:2.4-A Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex
J.Biol.Chem., 277, 2002
6G3U
DownloadVisualize
BU of 6g3u by Molmil
Structure of Pseudomonas aeruginosa Isocitrate Dehydrogenase, IDH
Descriptor: 2-OXOGLUTARIC ACID, Isocitrate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Crousilles, A, Welch, M.
Deposit date:2018-03-26
Release date:2018-08-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.707 Å)
Cite:Gluconeogenic precursor availability regulates flux through the glyoxylate shunt inPseudomonas aeruginosa.
J. Biol. Chem., 293, 2018

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon