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PDB: 50 件
6WGE
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BU of 6wge by Molmil
Cryo-EM structure of human Cohesin-NIPBL-DNA complex without STAG1
分子名称: DNA (43-MER), Double-strand-break repair protein rad21 homolog, MAGNESIUM ION, ...
著者Shi, Z.B, Gao, H, Bai, X.C, Yu, H.
登録日2020-04-05
公開日2020-05-20
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Cryo-EM structure of the human cohesin-NIPBL-DNA complex.
Science, 368, 2020
7W1M
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BU of 7w1m by Molmil
Cryo-EM structure of human cohesin-CTCF-DNA complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Cohesin subunit SA-1, ...
著者Shi, Z.B, Bai, X.C, Yu, H.
登録日2021-11-19
公開日2023-05-31
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (6.5 Å)
主引用文献CTCF and R-loops are boundaries of cohesin-mediated DNA looping.
Mol.Cell, 83, 2023
6WG3
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BU of 6wg3 by Molmil
Cryo-EM structure of human Cohesin-NIPBL-DNA complex
分子名称: Cohesin subunit SA-1, DNA (51-MER), Double-strand-break repair protein rad21 homolog, ...
著者Shi, Z.B, Gao, H, Bai, X.C, Yu, H.
登録日2020-04-04
公開日2020-05-20
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (5.3 Å)
主引用文献Cryo-EM structure of the human cohesin-NIPBL-DNA complex.
Science, 368, 2020
6WG6
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BU of 6wg6 by Molmil
Crystal structure of human SMC1-SMC3 hinge domain heterodimer in north-open conformation
分子名称: Structural maintenance of chromosomes protein, Structural maintenance of chromosomes protein 3, poly(dT)
著者Shi, Z.B, Yu, H.
登録日2020-04-04
公開日2020-05-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.54 Å)
主引用文献Cryo-EM structure of the human cohesin-NIPBL-DNA complex.
Science, 368, 2020
4FZF
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BU of 4fzf by Molmil
Crystal structure of MST4-MO25 complex with DKI
分子名称: 5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE, Calcium-binding protein 39, Serine/threonine-protein kinase MST4
著者Shi, Z.B, Zhou, Z.C.
登録日2012-07-06
公開日2013-03-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.64 Å)
主引用文献Structure of the MST4 in Complex with MO25 Provides Insights into Its Activation Mechanism
Structure, 21, 2013
4FZD
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BU of 4fzd by Molmil
Crystal structure of MST4-MO25 complex with WSF motif
分子名称: C-terminal peptide from Serine/threonine-protein kinase MST4, Calcium-binding protein 39, GLYCEROL, ...
著者Shi, Z.B, Zhou, Z.C.
登録日2012-07-06
公開日2013-03-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Structure of the MST4 in Complex with MO25 Provides Insights into Its Activation Mechanism
Structure, 21, 2013
6WG4
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BU of 6wg4 by Molmil
Crystal structure of human SMC1-SMC3 hinge domain heterodimer in south-open conformation
分子名称: Structural maintenance of chromosomes protein, Structural maintenance of chromosomes protein 3
著者Shi, Z.B, Yu, H.
登録日2020-04-04
公開日2020-05-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Cryo-EM structure of the human cohesin-NIPBL-DNA complex.
Science, 368, 2020
4FZA
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BU of 4fza by Molmil
Crystal structure of MST4-MO25 complex
分子名称: Calcium-binding protein 39, GLYCEROL, Serine/threonine-protein kinase MST4
著者Shi, Z.B, Zhou, Z.C.
登録日2012-07-06
公開日2013-03-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structure of the MST4 in Complex with MO25 Provides Insights into Its Activation Mechanism
Structure, 21, 2013
4Z8M
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BU of 4z8m by Molmil
Crystal structure of the MAVS-TRAF6 complex
分子名称: Peptide from Mitochondrial antiviral-signaling protein, TNF receptor-associated factor 6
著者Shi, Z.B, Zhou, Z.
登録日2015-04-09
公開日2015-09-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structural Insights into Mitochondrial Antiviral Signaling Protein (MAVS)-Tumor Necrosis Factor Receptor-associated Factor 6 (TRAF6) Signaling
J.Biol.Chem., 290, 2015
7FAU
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BU of 7fau by Molmil
Structure Determination of the NB1B11-RBD Complex
分子名称: NB_1B11, Spike protein S1, ZINC ION
著者Shi, Z.Z, Li, X.X, Wang, L, Sun, Z.C, Zhang, H.W, Chen, X.C, Cui, Q.Q, Qiao, H.R, Lan, Z.Y, Zhang, X.
登録日2021-07-07
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structural basis of nanobodies neutralizing SARS-CoV-2 variants.
Structure, 30, 2022
3CDJ
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BU of 3cdj by Molmil
Crystal structure of the E. coli KH/S1 domain truncated PNPase
分子名称: Polynucleotide phosphorylase
著者Shi, Z, Yang, W.Z, Lin-Chao, S, Chak, K.F, Yuan, H.S.
登録日2008-02-27
公開日2008-12-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation.
Rna, 14, 2008
3CDI
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BU of 3cdi by Molmil
Crystal structure of E. coli PNPase
分子名称: Polynucleotide phosphorylase
著者Shi, Z, Yang, W.Z, Lin-Chao, S, Chak, K.F, Yuan, H.S.
登録日2008-02-27
公開日2008-12-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation.
Rna, 14, 2008
5XY9
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BU of 5xy9 by Molmil
Structure of the MST4 and 14-3-3 complex
分子名称: 14-3-3 protein zeta/delta, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, GLYCEROL, ...
著者Shi, Z.B, Zhou, Z.C.
登録日2017-07-06
公開日2018-07-11
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.303 Å)
主引用文献Structure of the MST4 and 14-3-3 complex
To Be Published
8Y3M
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BU of 8y3m by Molmil
Cryo-EM structure of DSR2-DSAD1 complex (cross-linked)
分子名称: DSR anti-defence 1, SIR2-like domain-containing protein
著者Wang, R.W, Xu, Q, Wu, Z.X, Li, J.L, Shi, Z.B, Li, F.X.
登録日2024-01-29
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献The structural basis of the activation and inhibition of DSR2 NADase by phage proteins.
Nat Commun, 15, 2024
8Y3W
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BU of 8y3w by Molmil
The Cryo-EM structure of anti-phage defense associated DSR2 tetramer bound with two DSAD1 inhibitors (same side)
分子名称: DSR anti-defence 1, SIR2-like domain-containing protein
著者Wang, R.W, Xu, Q, Wu, Z.X, Li, J.L, Shi, Z.B, Li, F.X.
登録日2024-01-29
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.49 Å)
主引用文献The structural basis of the activation and inhibition of DSR2 NADase by phage proteins.
Nat Commun, 15, 2024
8Y13
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BU of 8y13 by Molmil
Cryo-EM structure of anti-phage defense associated DSR2 tetramer (H171A)
分子名称: SIR2-like domain-containing protein
著者Li, F.X, Shi, Z.B, Wang, R.W, Xu, Q, Yang, R, Wu, Z.X.
登録日2024-01-23
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.18 Å)
主引用文献The structural basis of the activation and inhibition of DSR2 NADase by phage proteins.
Nat Commun, 15, 2024
8ZC9
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BU of 8zc9 by Molmil
The Cryo-EM structure of DSR2-Tail tube-NAD+ complex
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SIR2-like domain-containing protein, tail tube protein
著者Wang, R, Xu, Q, Wu, Z, Li, J, Yang, R, Shi, Z, Li, F.
登録日2024-04-29
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献The structural basis of the activation and inhibition of DSR2 NADase by phage proteins.
Nat Commun, 15, 2024
2AOA
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BU of 2aoa by Molmil
Crystal structures of a high-affinity macrocyclic peptide mimetic in complex with the Grb2 SH2 domain
分子名称: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2-OXOETHYL)-9-(CARBOXYMETHYL)-14-(NAPHTHALEN-1-YLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL)PHENYL)MALONIC ACID, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, Growth factor receptor-bound protein 2
著者Phan, J, Shi, Z.D, Burke, T.R, Waugh, D.S.
登録日2005-08-12
公開日2005-10-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Crystal Structures of a High-affinity Macrocyclic Peptide Mimetic in Complex with the Grb2 SH2 Domain.
J.Mol.Biol., 353, 2005
2AXC
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BU of 2axc by Molmil
Crystal structure of ColE7 translocation domain
分子名称: Colicin E7, GLYCEROL, SULFATE ION
著者Cheng, Y.S, Shi, Z, Doudeva, L.G, Yang, W.Z, Chak, K.F, Yuan, H.S.
登録日2005-09-04
公開日2006-03-14
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献High-resolution crystal structure of a truncated ColE7 translocation domain: implications for colicin transport across membranes
J.Mol.Biol., 356, 2006
8Y3Y
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BU of 8y3y by Molmil
The Cryo-EM structure of anti-phage defense associated DSR2 tetramer bound with two DSAD1 inhibitors (opposite side)
分子名称: DSR anti-defence 1, SIR2-like domain-containing protein
著者Wang, R.W, Xu, Q, Wu, Z.X, Li, J.L, Shi, Z.B, Li, F.X.
登録日2024-01-29
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.33 Å)
主引用文献The structural basis of the activation and inhibition of DSR2 NADase by phage proteins.
Nat Commun, 15, 2024
8Y34
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BU of 8y34 by Molmil
Cryo-EM structure of anti-phage defense associated DSR2 (H171A) (map2)
分子名称: SIR2-like domain-containing protein
著者Wang, R.W, Xu, Q, Wu, Z.X, Li, J.L, Shi, Z.B, Li, F.X.
登録日2024-01-28
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.11 Å)
主引用文献The structural basis of the activation and inhibition of DSR2 NADase by phage proteins.
Nat Commun, 15, 2024
4KGB
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BU of 4kgb by Molmil
Structure of succinyl-CoA: 3-ketoacid CoA transferase from Drosophila melanogaster
分子名称: SULFATE ION, Succinyl-CoA:3-ketoacid-coenzyme A transferase
著者Wang, Y.C, Shi, Z.B, Zhang, M.
登録日2013-04-29
公開日2013-10-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Structure of succinyl-CoA:3-ketoacid CoA transferase from Drosophila melanogaster.
Acta Crystallogr.,Sect.F, 69, 2013
4FI9
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BU of 4fi9 by Molmil
Structure of human SUN-KASH complex
分子名称: Nesprin-2, SUN domain-containing protein 2
著者Wang, W.J, Shi, Z.B.
登録日2012-06-08
公開日2012-07-18
最終更新日2013-03-06
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structural insights into SUN-KASH complexes across the nuclear envelope.
Cell Res., 22, 2012
4HK1
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BU of 4hk1 by Molmil
Crystal Structure of PCNA from Drosophila melanogaster
分子名称: Proliferating cell nuclear antigen
著者Wang, K, Shi, Z.B, Zhou, Z.C.
登録日2012-10-14
公開日2013-04-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献Structure of PCNA from Drosophila melanogaster.
Acta Crystallogr.,Sect.F, 69, 2013
5GZB
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BU of 5gzb by Molmil
Crystal Structure of Transcription Factor TEAD4 in Complex with M-CAT DNA
分子名称: DNA (5'-D(*GP*AP*GP*AP*GP*GP*AP*AP*TP*GP*CP*AP*A)-3'), DNA (5'-D(*TP*TP*GP*CP*AP*TP*TP*CP*CP*TP*CP*TP*C)-3'), GLYCEROL, ...
著者He, F, Shi, Z.B, Zhou, Z.C.
登録日2016-09-28
公開日2017-04-19
最終更新日2017-08-09
実験手法X-RAY DIFFRACTION (2.704 Å)
主引用文献DNA-binding mechanism of the Hippo pathway transcription factor TEAD4
Oncogene, 36, 2017

 

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