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PDB: 1971 件

8I74
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Crystal structure of decarboxylated osteocalcin at pH 8.5
分子名称: Osteocalcin
著者Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
登録日2023-01-31
公開日2024-01-31
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
8I75
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BU of 8i75 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0
分子名称: Osteocalcin
著者Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
登録日2023-01-31
公開日2024-01-31
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
8I76
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Crystal structure of decarboxylated osteocalcin at pH 2.0 without glycerol
分子名称: Osteocalcin
著者Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
登録日2023-01-31
公開日2024-01-31
実験手法X-RAY DIFFRACTION (1.381 Å)
主引用文献Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
5YPZ
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BU of 5ypz by Molmil
Crystal structure of minor pilin CofB from CFA/III complexed with N-terminal peptide fragment of CofJ
分子名称: CofB, CofJ
著者Oki, H, Kawahara, K, Maruno, T, Imai, T, Muroga, Y, Fukakusa, S, Iwashita, T, Kobayashi, Y, Matsuda, S, Kodama, T, Iida, T, Yoshida, T, Ohkubo, T, Nakamura, S.
登録日2017-11-04
公開日2018-06-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.521 Å)
主引用文献Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1GEJ
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BU of 1gej by Molmil
STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM
分子名称: CYTOCHROME P450 55A1, N-BUTYL ISOCYANIDE, PROTOPORPHYRIN IX CONTAINING FE
著者lee, D.-S, Park, S.-Y, Yamane, K, Shiro, Y.
登録日2000-11-13
公開日2000-12-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural characterization of n-butyl-isocyanide complexes of cytochromes P450nor and P450cam.
Biochemistry, 40, 2001
1KWH
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BU of 1kwh by Molmil
Structure Analysis AlgQ2, a Macromolecule(alginate)-Binding Periplasmic Protein of Sphingomonas sp. A1.
分子名称: CALCIUM ION, Macromolecule-Binding Periplasmic Protein
著者Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K.
登録日2002-01-29
公開日2002-02-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution.
J.Mol.Biol., 316, 2002
1OED
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BU of 1oed by Molmil
STRUCTURE OF ACETYLCHOLINE RECEPTOR PORE FROM ELECTRON IMAGES
分子名称: Acetylcholine receptor beta subunit, Acetylcholine receptor delta subunit, Acetylcholine receptor gamma subunit, ...
著者Miyazawa, A, Fujiyoshi, Y, Unwin, N.
登録日2003-03-24
公開日2003-06-26
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structure and Gating Mechanism of the Acetylcholine Receptor Pore.
Nature, 423, 2003
5XHL
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Crystal Structure of HasAp with Gallium Phthalocyanine
分子名称: Heme acquisition protein HasAp, Phthalocyanine containing GA
著者Shoji, O, Shisaka, Y, Iwai, Y, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2017-04-21
公開日2017-12-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of HasAp with Gallium Phthalocyanine
to be published
3W39
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BU of 3w39 by Molmil
Crystal structure of HLA-B*5201 in complexed with HIV immunodominant epitope (TAFTIPSI)
分子名称: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-52 alpha chain, ...
著者Yagita, Y, Kuse, N, Kuroki, K, Gatanaga, H, Carlson, J.M, Chikata, T, Brumme, Z.L, Murakoshi, H, Akahoshi, T, Pfeifer, N, Mallal, S, John, M, Ose, T, Matsubara, H, Kanda, R, Fukunaga, Y, Honda, K, Kawashima, Y, Ariumi, Y, Oka, S, Maenaka, K, Takiguchi, M.
登録日2012-12-13
公開日2013-02-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Distinct HIV-1 Escape Patterns Selected by Cytotoxic T Cells with Identical Epitope Specificity
J.Virol., 87, 2013
1ITY
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BU of 1ity by Molmil
Solution structure of the DNA binding domain of human TRF1
分子名称: TRF1
著者Nishikawa, T, Okamura, H, Nagadoi, A, Konig, P, Rhodes, D, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-02-15
公開日2002-03-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a telomeric DNA complex of human TRF1
Structure, 9, 2001
6JO6
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Structure of the green algal photosystem I supercomplex with light-harvesting complex I
分子名称: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Suga, M, Miyazaki, N, Takahashi, Y.
登録日2019-03-20
公開日2019-06-19
最終更新日2019-06-26
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I.
Nat.Plants, 5, 2019
6JO5
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Structure of the green algal photosystem I supercomplex with light-harvesting complex I
分子名称: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Suga, M, Miyazaki, N, Takahashi, Y.
登録日2019-03-20
公開日2019-06-19
最終更新日2019-06-26
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I.
Nat.Plants, 5, 2019
5YUA
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BU of 5yua by Molmil
Crystal structure of voltage-gated sodium channel NavAb in high-pH condition
分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, CHAPSO, ...
著者Irie, K, Shimomura, T, Fujiyoshi, Y.
登録日2017-11-21
公開日2017-12-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.80085564 Å)
主引用文献Structural insight on the voltage dependence of prokaryotic voltage gated sodium channel NavAb.
FEBS Lett., 2017
5YUC
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Crystal structure of voltage-gated sodium channel NavAb N49K mutant
分子名称: CALCIUM ION, CHAPSO, DODECYL-BETA-D-MALTOSIDE, ...
著者Irie, K, Shimomura, T, Fujiyoshi, Y.
登録日2017-11-21
公開日2017-12-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.40099168 Å)
主引用文献Structural insight on the voltage dependence of prokaryotic voltage gated sodium channel NavAb.
FEBS Lett., 2017
1IV6
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BU of 1iv6 by Molmil
Solution Structure of the DNA Complex of Human TRF1
分子名称: 5'-D(*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3', 5'-D(*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3', TELOMERIC REPEAT BINDING FACTOR 1
著者Nishikawa, T, Okamura, H, Nagadoi, A, Konig, P, Rhodes, D, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-03-14
公開日2002-04-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a telomeric DNA complex of human TRF1.
Structure, 9, 2001
7DD4
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Solution structure of an RNA derived from the joint region of the TAR and PolyA stems of HIV-1 genomic RNA
分子名称: RNA (36-MER)
著者Obayashi, C.M, Shinohara, Y, Masuda, T, Kawai, G.
登録日2020-10-27
公開日2021-06-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Influence of the 5'-terminal sequences on the 5'-UTR structure of HIV-1 genomic RNA.
Sci Rep, 11, 2021
5YUB
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BU of 5yub by Molmil
Crystal structure of voltage-gated sodium channel NavAb E32Q mutant
分子名称: CALCIUM ION, CHAPSO, DODECYL-BETA-D-MALTOSIDE, ...
著者Irie, K, Shimomura, T, Fujiyoshi, Y.
登録日2017-11-21
公開日2017-12-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.40004 Å)
主引用文献Structural insight on the voltage dependence of prokaryotic voltage gated sodium channel NavAb.
FEBS Lett., 2017
1GEI
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BU of 1gei by Molmil
STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM
分子名称: CYTOCHROME P450 55A1, N-BUTYL ISOCYANIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Lee, D.-S, Park, S.-Y, Yamane, K, Shiro, Y.
登録日2000-11-13
公開日2000-11-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural characterization of n-butyl-isocyanide complexes of cytochromes P450nor and P450cam.
Biochemistry, 40, 2001
1IO8
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BU of 1io8 by Molmil
Thermophilic cytochrome P450 (CYP119) from sulfolobus solfataricus: High resolution structural origin of its thermostability and functional properties
分子名称: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-02-08
公開日2001-03-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties
J.Inorg.Biochem., 91, 2002
1IXF
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Crystal Structure of the K intermediate of bacteriorhodopsin
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, RETINAL, ...
著者Matsui, Y, Sakai, K, Murakami, M, Shiro, Y, Adachi, S, Okumura, H, Kouyama, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-06-20
公開日2002-12-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Specific Damage Induced by X-ray Radiation and Structural Changes in the Primary Photoreaction of Bacteriorhodopsin
J.MOL.BIOL., 324, 2002
2MLQ
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BU of 2mlq by Molmil
Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a frount bound form
分子名称: MCP-1 receptor
著者Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H.
登録日2014-03-04
公開日2014-10-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT.
Febs J., 281, 2014
5ZTX
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co-factor free Transaminase
分子名称: 1,2-ETHANEDIOL, transaminase
著者Park, H.H, Shin, Y.C.
登録日2018-05-05
公開日2018-08-29
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural dynamics of the transaminase active site revealed by the crystal structure of a co-factor free omega-transaminase from Vibrio fluvialis JS17
Sci Rep, 8, 2018
5Y52
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Crystal Structure of Highly Active BTUO Mutant P287G Improved by Humidity Control at 83% RH
分子名称: 1,2-ETHANEDIOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
著者Itoh, T, Kishimoto, T, Nishiya, Y.
登録日2017-08-07
公開日2018-08-08
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Conformational Flexibility of Plastic Interface Loop Allows Entropic Adaptation of Urate Oxidase to Environmental pH
To Be Published
2MLO
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Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a Membrane bound form
分子名称: MCP-1 receptor
著者Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H.
登録日2014-03-04
公開日2014-10-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT.
Febs J., 281, 2014
6AJV
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BU of 6ajv by Molmil
Crystal structure of BRD4 in complex with isoliquiritigenin and DMSO (Cocktail No. 3)
分子名称: 2',4,4'-TRIHYDROXYCHALCONE, Bromodomain-containing protein 4, DIMETHYL SULFOXIDE, ...
著者Yokoyama, T, Matsumoto, K, Nabeshima, Y, Mizuguchi, M.
登録日2018-08-28
公開日2019-06-12
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural and thermodynamic characterization of the binding of isoliquiritigenin to the first bromodomain of BRD4.
Febs J., 286, 2019

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件を2024-07-10に公開中

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