1VD5
 
 | | Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCINE, ... | | 著者 | Itoh, T, Akao, S, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2004-03-18 | | 公開日 | 2004-07-13 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
J.Biol.Chem., 279, 2004
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1Y3Q
 | | Structure of AlgQ1, alginate-binding protein | | 分子名称: | AlgQ1, CALCIUM ION | | 著者 | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2004-11-26 | | 公開日 | 2005-04-12 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
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1Y3N
 | | Structure of AlgQ1, alginate-binding protein, complexed with an alginate disaccharide | | 分子名称: | AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid | | 著者 | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2004-11-26 | | 公開日 | 2005-04-12 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
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1Y3P
 | | Structure of AlgQ1, alginate-binding protein, complexed with an alginate tetrasaccharide | | 分子名称: | AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid | | 著者 | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2004-11-26 | | 公開日 | 2005-04-12 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
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5XS8
 | | Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with two sulfate groups at C-4 and C-6 positions of GalNAc | | 分子名称: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1 | | 著者 | Oiki, S, Kamochi, R, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2017-06-12 | | 公開日 | 2018-01-17 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.952 Å) | | 主引用文献 | Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans.
Sci Rep, 7, 2017
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5Y9J
 | | BAFF in complex with belimumab | | 分子名称: | Tumor necrosis factor ligand superfamily member 13B, belibumab light chain, belimumab heavy chain | | 著者 | Heo, Y.-S, Shin, W. | | 登録日 | 2017-08-25 | | 公開日 | 2018-02-21 | | 最終更新日 | 2019-09-04 | | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | | 主引用文献 | BAFF-neutralizing interaction of belimumab related to its therapeutic efficacy for treating systemic lupus erythematosus.
Nat Commun, 9, 2018
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5Y4C
 | | Crystal structure of EfeO-like protein Algp7 in complex with a metal ion | | 分子名称: | Alginate-binding protein, COPPER (II) ION, GLYCEROL | | 著者 | Temtrirath, K, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2017-08-03 | | 公開日 | 2017-10-04 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.701 Å) | | 主引用文献 | Binding mode of metal ions to the bacterial iron import protein EfeO
Biochem. Biophys. Res. Commun., 493, 2017
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5Y9K
 | | Structure of the belimumab Fab fragment | | 分子名称: | belimumab heavy chain, belimumab light chain | | 著者 | Heo, Y.-S, Shin, W. | | 登録日 | 2017-08-25 | | 公開日 | 2018-02-21 | | 最終更新日 | 2019-09-04 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | BAFF-neutralizing interaction of belimumab related to its therapeutic efficacy for treating systemic lupus erythematosus.
Nat Commun, 9, 2018
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5WUV
 | | Crystal structure of Certolizumab Fab | | 分子名称: | heavy chain, light chain | | 著者 | Heo, Y.S, Lee, J.U, Son, J.Y, Shin, W, Yoo, K.Y. | | 登録日 | 2016-12-21 | | 公開日 | 2017-06-07 | | 実験手法 | X-RAY DIFFRACTION (1.952 Å) | | 主引用文献 | Molecular Basis for the Neutralization of Tumor Necrosis Factor alpha by Certolizumab Pegol in the Treatment of Inflammatory Autoimmune Diseases
Int J Mol Sci, 18, 2017
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5Z6B
 | | Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide | | 分子名称: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-[beta-D-galactopyranose-(1-4)]alpha-L-rhamnopyranose, Putative ABC transporter substrate-binding protein YesO | | 著者 | Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2018-01-22 | | 公開日 | 2019-01-23 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.582 Å) | | 主引用文献 | Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
To Be Published
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5Z6C
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6A6S
 | | Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans in complex with FSA, Seleno-methionine Derivative | | 分子名称: | (4S,5S)-1,2-DITHIANE-4,5-DIOL, 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ... | | 著者 | Ogawa, N, Maruyama, Y, Itoh, T, Hashimoto, W, Murata, K. | | 登録日 | 2018-06-29 | | 公開日 | 2019-05-15 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.851 Å) | | 主引用文献 | Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis.
Sci Rep, 9, 2019
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2Z42
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 | | 分子名称: | Alginate lyase, SULFATE ION | | 著者 | Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2007-06-12 | | 公開日 | 2008-05-27 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
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2ZAB
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG) | | 分子名称: | Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | | 著者 | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2007-10-02 | | 公開日 | 2008-05-27 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | | 主引用文献 | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
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2ZAC
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG) | | 分子名称: | Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | | 著者 | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2007-10-02 | | 公開日 | 2008-05-27 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
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2ZUY
 | | Crystal structure of exotype rhamnogalacturonan lyase YesX | | 分子名称: | CALCIUM ION, YesX protein | | 著者 | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2008-10-28 | | 公開日 | 2009-02-03 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases
J.Biol.Chem., 284, 2009
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2ZYC
 | | Crystal structure of peptidoglycan hydrolase from Sphingomonas sp. A1 | | 分子名称: | PHOSPHATE ION, Peptidoglycan hydrolase FlgJ | | 著者 | Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2009-01-19 | | 公開日 | 2009-02-03 | | 最終更新日 | 2024-05-29 | | 実験手法 | X-RAY DIFFRACTION (1.74 Å) | | 主引用文献 | Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ
Biochem.Biophys.Res.Commun., 381, 2009
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3A09
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3AMI
 | | The crystal structure of the M16B metallopeptidase subunit from Sphingomonas sp. A1 | | 分子名称: | zinc peptidase | | 著者 | Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-08-20 | | 公開日 | 2011-02-02 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase
J.Mol.Biol., 407, 2011
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3ANJ
 | | Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae | | 分子名称: | Putative uncharacterized protein gbs1889 | | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-09-02 | | 公開日 | 2010-10-06 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
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3ANK
 | | Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S | | 分子名称: | 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, Putative uncharacterized protein gbs1889 | | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-09-02 | | 公開日 | 2010-10-06 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.02 Å) | | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
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3AFL
 | | Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Oligo alginate lyase | | 著者 | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-03-09 | | 公開日 | 2010-04-28 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.99 Å) | | 主引用文献 | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010
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2ZUX
 | | Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein, ... | | 著者 | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2008-10-28 | | 公開日 | 2009-02-03 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.32 Å) | | 主引用文献 | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases
J.Biol.Chem., 284, 2009
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3ANI
 | | Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae | | 分子名称: | Putative uncharacterized protein gbs1889 | | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-09-02 | | 公開日 | 2010-10-06 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
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3AT7
 | | Crystal structure of bacterial cell-surface alginate-binding protein Algp7 | | 分子名称: | Alginate-binding flagellin | | 著者 | Maruyama, Y, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-12-27 | | 公開日 | 2011-02-23 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif.
Biochem.Biophys.Res.Commun., 405, 2011
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