8IAW
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8IAU
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![BU of 8iau by Molmil](/molmil-images/mine/8iau) | Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate | Descriptor: | 1,6-di-O-phosphono-beta-D-fructofuranose, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ... | Authors: | Nakashima, R, Taguchi, A. | Deposit date: | 2023-02-09 | Release date: | 2023-06-14 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem., 299, 2023
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8IAV
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6IE9
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![BU of 6ie9 by Molmil](/molmil-images/mine/6ie9) | RamR in complex with chenodeoxycholic acid | Descriptor: | CHENODEOXYCHOLIC ACID, Regulatory protein, SULFATE ION | Authors: | Nakashima, R, Sakurai, K, Yamasaki, S, Nishino, K. | Deposit date: | 2018-09-13 | Release date: | 2019-02-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.78 Å) | Cite: | Crystal structure of the multidrug resistance regulator RamR complexed with bile acids. Sci Rep, 9, 2019
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2E5D
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![BU of 2e5d by Molmil](/molmil-images/mine/2e5d) | Crystal structure of Human NMPRTase complexed with nicotinamide | Descriptor: | NICOTINAMIDE, Nicotinamide phosphoribosyltransferase | Authors: | Takahashi, R, Nakamura, S, Kobayashi, Y, Ohkubo, T. | Deposit date: | 2006-12-20 | Release date: | 2007-12-25 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase J.Biochem., 147, 2010
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2E5C
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![BU of 2e5c by Molmil](/molmil-images/mine/2e5c) | Crystal structure of Human NMPRTase complexed with 5'-phosphoribosyl-1'-pyrophosphate | Descriptor: | 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, Nicotinamide phosphoribosyltransferase | Authors: | Takahashi, R, Nakamura, S, Kobayashi, Y, Ohkubo, T. | Deposit date: | 2006-12-20 | Release date: | 2007-12-25 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase J.Biochem., 147, 2010
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7D5R
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![BU of 7d5r by Molmil](/molmil-images/mine/7d5r) | Structure of the Ca2+-bound C646A mutant of peptidylarginine deiminase type III (PAD3) | Descriptor: | CALCIUM ION, CHLORIDE ION, GLYCEROL, ... | Authors: | Mashimo, R, Akimoto, M, Unno, M. | Deposit date: | 2020-09-28 | Release date: | 2021-06-02 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.148 Å) | Cite: | Structures of human peptidylarginine deiminase type III provide insights into substrate recognition and inhibitor design. Arch.Biochem.Biophys., 708, 2021
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3OOL
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![BU of 3ool by Molmil](/molmil-images/mine/3ool) | I-SceI complexed with C/G+4 DNA substrate | Descriptor: | 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*CP*GP*GP*GP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*GP*GP*TP*TP*AP*TP*CP*CP*CP*TP*AP*GP*CP*GP*T)-3', CALCIUM ION, ... | Authors: | Joshi, R, Chen, J.-H, Golden, B.L, Gimble, F.S. | Deposit date: | 2010-08-31 | Release date: | 2010-11-17 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Evolution of I-SceI Homing Endonucleases with Increased DNA Recognition Site Specificity. J.Mol.Biol., 405, 2011
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7CAO
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![BU of 7cao by Molmil](/molmil-images/mine/7cao) | Crystal structure of red chromoprotein from Olindias formosa | Descriptor: | Chromoprotein | Authors: | Nakashima, R, Zhai, L, Ike, Y, Matsudz, T, Nagai, T. | Deposit date: | 2020-06-09 | Release date: | 2022-04-20 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | Structure-based analysis and evolution of a monomerized red-colored chromoprotein from the Olindias formosa jellyfish. Protein Sci., 31, 2022
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3OOR
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![BU of 3oor by Molmil](/molmil-images/mine/3oor) | I-SceI mutant (K86R/G100T)complexed with C/G+4 DNA substrate | Descriptor: | 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*CP*GP*GP*GP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*GP*GP*TP*TP*AP*TP*CP*CP*CP*TP*AP*GP*CP*GP*T)-3', CALCIUM ION, ... | Authors: | Joshi, R, Chen, J.-H, Golden, B.L, Gimble, F.S. | Deposit date: | 2010-08-31 | Release date: | 2010-11-17 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Evolution of I-SceI Homing Endonucleases with Increased DNA Recognition Site Specificity. J.Mol.Biol., 405, 2011
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2EY4
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![BU of 2ey4 by Molmil](/molmil-images/mine/2ey4) | Crystal Structure of a Cbf5-Nop10-Gar1 Complex | Descriptor: | Probable tRNA pseudouridine synthase B, Ribosome biogenesis protein Nop10, ZINC ION, ... | Authors: | Rashid, R, Liang, B, Li, H, Southeast Collaboratory for Structural Genomics (SECSG) | Deposit date: | 2005-11-09 | Release date: | 2006-01-24 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.11 Å) | Cite: | Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita. Mol.Cell, 21, 2006
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6IIA
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![BU of 6iia by Molmil](/molmil-images/mine/6iia) | MexB in complex with LMNG | Descriptor: | Lauryl Maltose Neopentyl Glycol, Multidrug resistance protein MexB | Authors: | Nakashima, R, Sakurai, K, Nakao, K. | Deposit date: | 2018-10-04 | Release date: | 2019-03-27 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.91 Å) | Cite: | Crystal structures of multidrug efflux pump MexB bound with high-molecular-mass compounds. Sci Rep, 9, 2019
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1Q9P
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![BU of 1q9p by Molmil](/molmil-images/mine/1q9p) | Solution structure of the mature HIV-1 protease monomer | Descriptor: | HIV-1 Protease | Authors: | Ishima, R, Torchia, D.A, Lynch, S.M, Gronenborn, A.M, Louis, J.M. | Deposit date: | 2003-08-25 | Release date: | 2004-03-02 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution structure of the mature HIV-1 protease monomer: Insight into the tertiary fold and stability of a precursor J.Biol.Chem., 278, 2003
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1UDS
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![BU of 1uds by Molmil](/molmil-images/mine/1uds) | Crystal structure of the tRNA processing enzyme RNase PH R126A mutant from Aquifex aeolicus | Descriptor: | PHOSPHATE ION, Ribonuclease PH, SULFATE ION | Authors: | Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-05-02 | Release date: | 2003-09-23 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus J.Biol.Chem., 278, 2003
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1UDN
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![BU of 1udn by Molmil](/molmil-images/mine/1udn) | Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus | Descriptor: | PHOSPHATE ION, Ribonuclease PH, SULFATE ION | Authors: | Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-05-02 | Release date: | 2003-09-23 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus J.Biol.Chem., 278, 2003
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1UDO
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![BU of 1udo by Molmil](/molmil-images/mine/1udo) | Crystal structure of the tRNA processing enzyme RNase PH R86A mutant from Aquifex aeolicus | Descriptor: | PHOSPHATE ION, Ribonuclease PH, SULFATE ION | Authors: | Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-05-02 | Release date: | 2003-09-23 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus J.Biol.Chem., 278, 2003
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1UDQ
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![BU of 1udq by Molmil](/molmil-images/mine/1udq) | Crystal structure of the tRNA processing enzyme RNase PH T125A mutant from Aquifex aeolicus | Descriptor: | PHOSPHATE ION, Ribonuclease PH, SULFATE ION | Authors: | Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-05-02 | Release date: | 2003-09-23 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus J.Biol.Chem., 278, 2003
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1WD5
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![BU of 1wd5 by Molmil](/molmil-images/mine/1wd5) | Crystal structure of TT1426 from Thermus thermophilus HB8 | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, hypothetical protein TT1426 | Authors: | Shibata, R, Kukimoto-Niino, M, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-11 | Release date: | 2004-11-11 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution Protein Sci., 14, 2005
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2LAB
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3W1W
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![BU of 3w1w by Molmil](/molmil-images/mine/3w1w) | Protein-drug complex | Descriptor: | 1,2-ETHANEDIOL, 2-HYDROXYBENZOIC ACID, CHOLIC ACID, ... | Authors: | Ishii, R, Gupta, V, Yamaguchi, Y, Handa, H, Nureki, O. | Deposit date: | 2012-11-21 | Release date: | 2013-10-09 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.006 Å) | Cite: | Salicylic Acid induces mitochondrial injury by inhibiting ferrochelatase heme biosynthesis activity Mol.Pharmacol., 84, 2013
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3VYW
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![BU of 3vyw by Molmil](/molmil-images/mine/3vyw) | Crystal structure of MNMC2 from Aquifex Aeolicus | Descriptor: | BENZAMIDINE, MNMC2, S-ADENOSYLMETHIONINE | Authors: | Shibata, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2012-10-03 | Release date: | 2012-10-17 | Last modified: | 2022-08-24 | Method: | X-RAY DIFFRACTION (2.49 Å) | Cite: | Characterization and structure of the Aquifex aeolicus protein DUF752: a bacterial tRNA-methyltransferase (MnmC2) functioning without the usually fused oxidase domain (MnmC1). J.Biol.Chem., 287, 2012
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2E7Y
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![BU of 2e7y by Molmil](/molmil-images/mine/2e7y) | High resolution structure of T. maritima tRNase Z | Descriptor: | S-1,2-PROPANEDIOL, SULFATE ION, ZINC ION, ... | Authors: | Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2007-01-15 | Release date: | 2007-09-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.97 Å) | Cite: | The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes Acta Crystallogr.,Sect.F, 63, 2007
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5Y01
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![BU of 5y01 by Molmil](/molmil-images/mine/5y01) | Acid-tolerant monomeric GFP, Gamillus, non-fluorescence (OFF) state | Descriptor: | Green fluorescent protein, PHOSPHATE ION | Authors: | Nakashima, R, Sakurai, K, Shinoda, H, Matsuda, T, Nagai, T. | Deposit date: | 2017-07-14 | Release date: | 2018-01-17 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Acid-Tolerant Monomeric GFP from Olindias formosa. Cell Chem Biol, 25, 2018
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5Y00
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![BU of 5y00 by Molmil](/molmil-images/mine/5y00) | Acid-tolerant monomeric GFP, Gamillus, fluorescence (ON) state | Descriptor: | CHLORIDE ION, GLYCEROL, Green fluorescent protein, ... | Authors: | Nakashima, R, Sakurai, K, Shinoda, H, Matsuda, T, Nagai, T. | Deposit date: | 2017-07-14 | Release date: | 2018-01-17 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Acid-Tolerant Monomeric GFP from Olindias formosa. Cell Chem Biol, 25, 2018
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2CY1
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![BU of 2cy1 by Molmil](/molmil-images/mine/2cy1) | Crystal structure of APE1850 | Descriptor: | NusA protein homolog | Authors: | Shibata, R, Bessho, Y, Umehara, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-07-04 | Release date: | 2006-01-04 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystallization of the archaeal transcription termination factor NusA: a significant decrease in twinning under microgravity conditions Acta Crystallogr.,Sect.F, 63, 2007
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