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PDB: 135 results

6Z18
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BU of 6z18 by Molmil
Crystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; R32 form
Descriptor: RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG
Authors:Ruszkowski, M, Sekula, B, Mao, S, Haruehanroengra, P, Sheng, J.
Deposit date:2020-05-12
Release date:2020-09-02
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA.
Nucleic Acids Res., 48, 2020
3BM0
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BU of 3bm0 by Molmil
Structure of DNA Octamer G(dUSe)G(5-SedU)ACAC
Descriptor: 5'-D(*GP*(2'-Se-U)P*GP*(5-Se-U)P*AP*CP*AP*C)-3'
Authors:Jiang, J, SHeng, J, Hassan, A.E, Huang, Z.
Deposit date:2007-12-11
Release date:2008-06-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis and crystallographic analysis of 5-Se-thymidine DNAs.
Org.Lett., 11, 2009
5BNP
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BU of 5bnp by Molmil
Crystal structure of human enterovirus D68 in complex with 3'SLN
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Liu, Y, Sheng, J, Meng, G, Xiao, C, Rossmann, M.G.
Deposit date:2015-05-26
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Sialic acid-dependent cell entry of human enterovirus D68.
Nat Commun, 6, 2015
5BNO
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BU of 5bno by Molmil
Crystal structure of human enterovirus D68 in complex with 6'SLN
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Liu, Y, Sheng, J, Meng, G, Xiao, C, Rossmann, M.G.
Deposit date:2015-05-26
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Sialic acid-dependent cell entry of human enterovirus D68.
Nat Commun, 6, 2015
6WY2
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BU of 6wy2 by Molmil
Crystal structure of RNA-10mer: CCGG(N4-methyl-C)GCCGG
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA-10mer: CCGG(4-methyl-C)GCCGG
Authors:Sekula, B, Ruszkowski, M, Mao, S, Haruehanroengra, P, Sheng, J.
Deposit date:2020-05-12
Release date:2020-09-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.928 Å)
Cite:Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA.
Nucleic Acids Res., 48, 2020
6WY3
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BU of 6wy3 by Molmil
Crystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; P212121 form
Descriptor: RNA (5'-R(*CP*CP*GP*GP*(LV2)P*GP*CP*CP*GP*G)-3')
Authors:Sekula, B, Ruszkowski, M, Mao, S, Haruehanroengra, P, Sheng, J.
Deposit date:2020-05-12
Release date:2020-09-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.647 Å)
Cite:Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA.
Nucleic Acids Res., 48, 2020
4WM7
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BU of 4wm7 by Molmil
Crystal Structure of Human Enterovirus D68 in Complex with Pleconaril
Descriptor: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE, VP1, VP2, ...
Authors:Liu, Y, Sheng, J, Fokine, A, Meng, G, Long, F, Kuhn, R.J, Rossmann, M.G.
Deposit date:2014-10-08
Release date:2015-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Virus structure. Structure and inhibition of EV-D68, a virus that causes respiratory illness in children.
Science, 347, 2015
4WM8
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BU of 4wm8 by Molmil
Crystal Structure of Human Enterovirus D68
Descriptor: DECANOIC ACID, VP1, VP2, ...
Authors:Liu, Y, Sheng, J, Fokine, A, Meng, G, Long, F, Kuhn, R.J, Rossmann, M.G.
Deposit date:2014-10-08
Release date:2015-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Virus structure. Structure and inhibition of EV-D68, a virus that causes respiratory illness in children.
Science, 347, 2015
4DWI
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BU of 4dwi by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with self complementary DNA, Se-dGTP and Calcium
Descriptor: 9-METHYLGUANINE, CALCIUM ION, DNA (5'-D(*AP*CP*TP*GP*GP*AP*TP*CP*CP*A)-3'), ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-24
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
5TDK
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BU of 5tdk by Molmil
RNA decamer duplex with eight 2'-5'-linkages
Descriptor: RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3'), STRONTIUM ION
Authors:Luo, Z, Sheng, J.
Deposit date:2016-09-19
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Structural insights into RNA duplexes with multiple 2 -5 -linkages.
Nucleic Acids Res., 45, 2017
4DSK
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BU of 4dsk by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, PPi and Calcium
Descriptor: CALCIUM ION, DNA (5'-D(*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*CP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-19
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4DSJ
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BU of 4dsj by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, dGTP and Calcium
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA, ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-19
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4DSL
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BU of 4dsl by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and Calcium
Descriptor: DNA (5'-D(*G*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA polymerase, ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-19
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4DSI
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BU of 4dsi by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, Se-dGTP and Calcium
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, CALCIUM ION, DNA, ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-19
Release date:2013-03-27
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
5TDJ
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BU of 5tdj by Molmil
RNA decamer duplex with four 2'-5'-linkages
Descriptor: RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3'), STRONTIUM ION
Authors:Luo, Z, Sheng, J.
Deposit date:2016-09-19
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into RNA duplexes with multiple 2 -5 -linkages.
Nucleic Acids Res., 45, 2017
8QX9
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BU of 8qx9 by Molmil
TDP-43 amyloid fibrils: Morphology-1a
Descriptor: TAR DNA-binding protein 43
Authors:Sharma, K, Shenoy, J, Loquet, A, Schmidt, M, Faendrich, M.
Deposit date:2023-10-24
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (3.76 Å)
Cite:Cryo-EM observation of the amyloid key structure of polymorphic TDP-43 amyloid fibrils.
Nat Commun, 15, 2024
4KW0
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BU of 4kw0 by Molmil
Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(1TW)P*CP*G)-3'), MAGNESIUM ION
Authors:Jiang, S, Gan, J, Sheng, J, Sun, H, Huang, Z.
Deposit date:2013-05-23
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification
TO BE PUBLISHED
4NDZ
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BU of 4ndz by Molmil
Structure of Maltose Binding Protein fusion to 2-O-Sulfotransferase with bound heptasaccharide and PAP
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Maltose-binding periplasmic protein, Heparan sulfate 2-O-sulfotransferase 1 fusion, ...
Authors:Liu, C, Sheng, J, Krahn, J.M, Perera, L, Xu, Y, Hsieh, P, Liu, J, Pedersen, L.C.
Deposit date:2013-10-28
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Deciphering the role of 2-O-sulfotransferase in regulating heparan sulfate biosynthesis
To be Published
8QXB
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BU of 8qxb by Molmil
TDP-43 amyloid fibrils: Morphology-2
Descriptor: TAR DNA-binding protein 43
Authors:Sharma, K, Shenoy, J, Loquet, A, Schmidt, M, Faendrich, M.
Deposit date:2023-10-24
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (3.86 Å)
Cite:Cryo-EM observation of the amyloid key structure of polymorphic TDP-43 amyloid fibrils.
Nat Commun, 15, 2024
8QXA
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BU of 8qxa by Molmil
TDP-43 amyloid fibrils: Morphology-1b
Descriptor: TAR DNA-binding protein 43
Authors:Sharma, K, Shenoy, J, Loquet, A, Schmidt, M, Faendrich, M.
Deposit date:2023-10-24
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Cryo-EM observation of the amyloid key structure of polymorphic TDP-43 amyloid fibrils.
Nat Commun, 15, 2024
2HC7
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BU of 2hc7 by Molmil
2'-selenium-T A-DNA [G(TSe)GTACAC]
Descriptor: 5'-D(*GP*(2ST)P*GP*TP*AP*CP*AP*C)-3'
Authors:Jiang, J, Sheng, J, Huang, Z.
Deposit date:2006-06-15
Release date:2006-07-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of 2'-Selenium modified T A-DNA G(TSe)GTACAC
TO BE PUBLISHED
2H05
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BU of 2h05 by Molmil
Br Derivitation of A-DNA Octamer GTG(Ubr)ACAC
Descriptor: 5'-D(*GP*TP*GP*(BRU)P*AP*CP*AP*C)-3'
Authors:Jiang, J, Sheng, J, Huang, Z.
Deposit date:2006-05-14
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Selenium derivatization of nucleic acids for crystallography.
Nucleic Acids Res., 35, 2007
5GSK
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BU of 5gsk by Molmil
Crystal structure of duplex DNA3 in complex with Hg(II) and Sr(II)
Descriptor: DNA (5'-D(*GP*GP*TP*CP*GP*TP*CP*C)-3'), MERCURY (II) ION, STRONTIUM ION
Authors:Liu, H.H, Wang, R, Yao, Q.Q, Cheng, Y.Q, Yang, C, Luo, Q, Wu, B.X, Li, J.X, Ma, J.B, Sheng, J, Gan, J.H.
Deposit date:2016-08-16
Release date:2017-02-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res., 45, 2017
5HNQ
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BU of 5hnq by Molmil
Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex
Descriptor: 5fC modified RNA
Authors:Luo, Z, Sheng, J.
Deposit date:2016-01-18
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res., 44, 2016
3J35
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BU of 3j35 by Molmil
Cryo-EM reconstruction of Dengue virus at 37 C
Descriptor: envelope protein
Authors:Zhang, X.Z, Sheng, J, Plevka, P, Kuhn, R.J, Diamond, M.S, Rossmann, M.G.
Deposit date:2013-02-24
Release date:2013-04-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Dengue structure differs at the temperatures of its human and mosquito hosts.
Proc.Natl.Acad.Sci.USA, 110, 2013

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PDB entries from 2024-07-17

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