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PDB: 347 results

4V8M
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High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
Descriptor: 18S RRNA OF THE SMALL RIBOSOMAL SUBUNIT, 40S RIBOSOMAL PROTEIN S10, PUTATIVE, ...
Authors:Hashem, Y, des Georges, A, Fu, J, Buss, S.N, Jossinet, F, Jobe, A, Zhang, Q, Liao, H.Y, Grassucci, R.A, Bajaj, C, Westhof, E, Madison-Antenucci, S, Frank, J.
Deposit date:2012-12-09
Release date:2014-07-09
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (5.57 Å)
Cite:High-Resolution Cryo-Electron Microscopy Structure of the Trypanosoma Brucei Ribosome.
Nature, 494, 2013
3KKS
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BU of 3kks by Molmil
Crystal structure of catalytic core domain of BIV integrase in crystal form II
Descriptor: ACETATE ION, GLYCEROL, Integrase
Authors:Shen, Y.
Deposit date:2009-11-06
Release date:2010-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of catalytic core domain of BIV integrase: implications for the interaction between integrase and target DNA
Protein Cell, 1, 2010
1W93
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BU of 1w93 by Molmil
Crystal Structure of Biotin Carboxylase Domain of Acetyl-Coenzyme A Carboxylase from Saccharomyces cerevisiae
Descriptor: ACETYL-COENZYME A CARBOXYLASE
Authors:Shen, Y, Volrath, S.L, Weatherly, S.C, Elich, T.D, Tong, L.
Deposit date:2004-10-05
Release date:2005-01-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Mechanism for the Potent Inhibition of Eukaryotic Acetyl-Coenzyme a Carboxylase by Soraphen A, a Macrocyclic Polyketide Natural Product
Mol.Cell, 16, 2004
1W96
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BU of 1w96 by Molmil
Crystal Structure of Biotin Carboxylase Domain of Acetyl-coenzyme A Carboxylase from Saccharomyces cerevisiae in Complex with Soraphen A
Descriptor: ACETYL-COENZYME A CARBOXYLASE, SORAPHEN A
Authors:Shen, Y, Volrath, S.L, Weatherly, S.C, Elich, T.D, Tong, L.
Deposit date:2004-10-06
Release date:2005-01-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Mechanism for the Potent Inhibition of Eukaryotic Acetyl-Coenzyme a Carboxylase by Soraphen A, a Macrocyclic Polyketide Natural Product
Mol.Cell, 16, 2004
3SV1
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BU of 3sv1 by Molmil
Crystal structure of APP peptide bound rat Mint2 PARM
Descriptor: Amyloid beta A4 precursor protein-binding family A member 2, Amyloid beta A4 protein
Authors:Shen, Y, Long, J, Yan, X, Xie, X.
Deposit date:2011-07-12
Release date:2012-07-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Open-closed motion of Mint2 regulates APP metabolism
J Mol Cell Biol, 5, 2013
4E4E
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BU of 4e4e by Molmil
Crystal Structure of the Y34F mutant of Saccharomyces cerevisiae Manganese Superoxide Dismutase
Descriptor: MANGANESE (II) ION, Superoxide dismutase [Mn], mitochondrial
Authors:Sheng, Y, Cascio, D, Valentine, J.S.
Deposit date:2012-03-12
Release date:2012-08-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Six-coordinate manganese(3+) in catalysis by yeast manganese superoxide dismutase.
Proc.Natl.Acad.Sci.USA, 109, 2012
2G54
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BU of 2g54 by Molmil
Crystal structure of Zn-bound human insulin-degrading enzyme in complex with insulin B chain
Descriptor: 1,4-DIETHYLENE DIOXIDE, Insulin-degrading enzyme, ZINC ION, ...
Authors:Shen, Y, Tang, W.-J.
Deposit date:2006-02-22
Release date:2006-10-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism.
Nature, 443, 2006
7Y75
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BU of 7y75 by Molmil
SIT1-ACE2-BA.2 RBD
Descriptor: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Shen, Y.P, Li, Y.N, Zhang, Y.Y, Yan, R.H.
Deposit date:2022-06-21
Release date:2022-11-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structures of ACE2-SIT1 recognized by Omicron variants of SARS-CoV-2.
Cell Discov, 8, 2022
7Y76
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SIT1-ACE2-BA.5 RBD
Descriptor: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Shen, Y.P, Li, Y.N, Zhang, Y.Y, Yan, R.H.
Deposit date:2022-06-21
Release date:2023-01-04
Last modified:2023-02-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of ACE2-SIT1 recognized by Omicron variants of SARS-CoV-2.
Cell Discov, 8, 2022
8VCJ
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BU of 8vcj by Molmil
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA, MAGNESIUM ION, ...
Authors:Shen, Y, Guarne, A.
Deposit date:2023-12-14
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Assembly of the Tn7 targeting complex by a regulated stepwise process.
Mol.Cell, 84, 2024
8VCT
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BU of 8vct by Molmil
CyoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (50-MER), MAGNESIUM ION, ...
Authors:Shen, Y, Guarne, A.
Deposit date:2023-12-14
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.83 Å)
Cite:Assembly of the Tn7 targeting complex by a regulated stepwise process.
Mol.Cell, 84, 2024
8GLW
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BU of 8glw by Molmil
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (50-MER), ...
Authors:Shen, Y, Guarne, A.
Deposit date:2023-03-23
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:Assembly of the Tn7 targeting complex by a regulated stepwise process.
Mol.Cell, 84, 2024
8K8S
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BU of 8k8s by Molmil
F8-A22-E4 complex of MPXV in complex with DNA and Ara-CTP
Descriptor: 4-amino-1-{5-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}pyrimidin-2(1H)-one, DNA (5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*C)-3'), DNA (5'-D(P*TP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3'), ...
Authors:Shen, Y.P, Li, Y.N, Yan, R.H.
Deposit date:2023-07-31
Release date:2024-06-05
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Structural basis for the inhibition mechanism of the DNA polymerase holoenzyme from mpox virus.
Structure, 32, 2024
8K8U
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BU of 8k8u by Molmil
F8-A22-E4 complex of MPXV in complex with DNA and dCTP
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*C)-3'), DNA (5'-D(P*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3'), ...
Authors:Shen, Y.P, Li, Y.N, Yan, R.H.
Deposit date:2023-07-31
Release date:2024-06-05
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural basis for the inhibition mechanism of the DNA polymerase holoenzyme from mpox virus.
Structure, 32, 2024
8GLX
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BU of 8glx by Molmil
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (50-MER), ...
Authors:Shen, Y, Guarne, A.
Deposit date:2023-03-23
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Assembly of the Tn7 targeting complex by a regulated stepwise process.
Mol.Cell, 84, 2024
7EPX
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BU of 7epx by Molmil
S protein of SARS-CoV-2 in complex with GW01
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Shen, Y.P, Zhang, Y.Y, Yan, R.H, Li, Y.N, Zhou, Q.
Deposit date:2021-04-28
Release date:2022-05-18
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Novel sarbecovirus bispecific neutralizing antibodies with exceptional breadth and potency against currently circulating SARS-CoV-2 variants and sarbecoviruses.
Cell Discov, 8, 2022
5Z3K
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BU of 5z3k by Molmil
Crystal structure of glucosidase from Croceicoccus marinus at 1.8 Angstrom resolution
Descriptor: GLYCEROL, glucosidase
Authors:Shen, Y.F, Hu, X.J, Li, J.X.
Deposit date:2018-01-08
Release date:2019-01-23
Last modified:2020-08-05
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Structural and Functional Insights Into CmGH1, a Novel GH39 Family beta-Glucosidase From Deep-Sea Bacterium.
Front Microbiol, 10, 2019
6BBK
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BU of 6bbk by Molmil
N-terminally truncated group I PilA from Pseudomonas aeruginosa strain 1244
Descriptor: Fimbrial protein
Authors:Shen, Y, Guarne, A, Nguyen, Y, Burrows, L.L.
Deposit date:2017-10-18
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:N-terminally truncated group I PilA from Pseudomonas aeruginosa strain 1244
To Be Published
7MBW
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BU of 7mbw by Molmil
Crystal structure of TnsC(1-503)A225V
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Transposon Tn7 transposition protein TnsC
Authors:Shen, Y, Guarne, A.
Deposit date:2021-04-01
Release date:2022-02-23
Last modified:2022-03-02
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for DNA targeting by the Tn7 transposon.
Nat.Struct.Mol.Biol., 29, 2022
8GLU
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BU of 8glu by Molmil
CryoEM structure of TnsC(1-503) bound to TnsD(1-318) from E.coli Tn7
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Shen, Y, Guarne, A.
Deposit date:2023-03-23
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Assembly of the Tn7 targeting complex by a regulated stepwise process.
Mol.Cell, 84, 2024
7MCS
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BU of 7mcs by Molmil
Cryo-electron microscopy structure of TnsC(1-503)A225V bound to DNA
Descriptor: DNA (5'-D(P*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, ...
Authors:Shen, Y, Ortega, J, Guarne, A.
Deposit date:2021-04-02
Release date:2022-02-23
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Structural basis for DNA targeting by the Tn7 transposon.
Nat.Struct.Mol.Biol., 29, 2022
5WDE
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BU of 5wde by Molmil
Crystal structure of the KIFC3 motor domain in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIFC3, MAGNESIUM ION, ...
Authors:Shen, Y, Tempel, W, Landry, R, Arrowsmith, C.H, Edwards, A.M, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2017-07-05
Release date:2017-08-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis of small molecule ATPase inhibition of a human mitotic kinesin motor protein.
Sci Rep, 7, 2017
3LXX
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BU of 3lxx by Molmil
Crystal structure of human GTPase IMAP family member 4
Descriptor: GTPase IMAP family member 4, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Shen, Y, Nedyalkova, L, Tong, Y, Tempel, W, Mackenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Andrews, D.W, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2010-02-25
Release date:2010-03-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of human GTPase IMAP family member 4
to be published
3NEY
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BU of 3ney by Molmil
Crystal structure of the kinase domain of MPP1/p55
Descriptor: 55 kDa erythrocyte membrane protein, SULFATE ION, UNKNOWN ATOM OR ION
Authors:Shen, Y, Tong, Y, Zhong, N, Guan, X, Tempel, W, MacKenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2010-06-09
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Crystal structure of the kinase domain of MPP1/p55
To be Published
3NKS
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BU of 3nks by Molmil
Structure of human protoporphyrinogen IX oxidase
Descriptor: 5-[2-CHLORO-4-(TRIFLUOROMETHYL)PHENOXY]-2-NITROBENZOIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Shen, Y.
Deposit date:2010-06-21
Release date:2011-04-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insight into human variegate porphyria disease
Faseb J., 25, 2011

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