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PDB: 53 results

4WA8
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Methanopyrus Kandleri FEN-1 nuclease
Descriptor: CHLORIDE ION, Flap endonuclease 1
Authors:Shah, S, Dunten, P, Horton, N.C.
Deposit date:2014-08-28
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and specificity of FEN-1 from Methanopyrus kandleri.
Proteins, 83, 2015
5IVP
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BU of 5ivp by Molmil
Crystal structure of the Peptidyl-tRNA hydrolase from Vibrio cholerae in the C121 space group at pH 6.5
Descriptor: CITRATE ANION, Peptidyl-tRNA hydrolase
Authors:Shahid, S, Kabra, A, Pal, R.K, Arora, A.
Deposit date:2016-03-21
Release date:2017-03-22
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of the Peptidyl-tRNA hydrolase from Vibrio cholerae in the C121 space group at pH 6.5
To Be Published
5ZK0
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BU of 5zk0 by Molmil
Crystal structure of Peptidyl-tRNA hydrolase mutant -M71A from Vibrio cholerae
Descriptor: Peptidyl-tRNA hydrolase, SODIUM ION
Authors:Shahid, S, Kabra, A, Pal, R.K, Arora, A.
Deposit date:2018-03-22
Release date:2018-06-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Role of methionine 71 in substrate recognition and structural integrity of bacterial peptidyl-tRNA hydrolase.
Biochim. Biophys. Acta, 1866, 2018
5IKE
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BU of 5ike by Molmil
Crystal structure of mutant-D97N of peptidyl-tRNA hydrolase from Vibrio cholerae
Descriptor: Peptidyl-tRNA hydrolase
Authors:Shahid, S, Kabra, A, Pal, R.K, Arora, A.
Deposit date:2016-03-03
Release date:2017-03-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Unraveling the stereochemical and dynamic aspects of the catalytic site of bacterial peptidyl-tRNA hydrolase.
RNA, 23, 2017
5IMB
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BU of 5imb by Molmil
Crystal structure of peptidyl-tRNA hydrolase mutant-N14D from Vibrio cholerae
Descriptor: Peptidyl-tRNA hydrolase
Authors:Shahid, S, Kabra, A, Pal, R.K, Arora, A.
Deposit date:2016-03-06
Release date:2017-03-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Unraveling the stereochemical and dynamic aspects of the catalytic site of bacterial peptidyl-tRNA hydrolase.
RNA, 23, 2017
4Z86
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Crystal structure of Peptidyl-tRNA hydrolase mutant -N118D from Vibrio cholerae at 1.63A resolution.
Descriptor: Peptidyl-tRNA hydrolase
Authors:Shahid, S, Kabra, A, Pal, R.K, Arora, A.
Deposit date:2015-04-08
Release date:2016-06-08
Last modified:2017-04-05
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Unraveling the stereochemical and dynamic aspects of the catalytic site of bacterial peptidyl-tRNA hydrolase.
RNA, 23, 2017
5B6J
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Crystal structure of Peptidyl-tRNA hydrolase mutant -H24N from Vibrio cholerae
Descriptor: Peptidyl-tRNA hydrolase
Authors:Shahid, S, Kabra, A, Pal, R.K, Arora, A.
Deposit date:2016-05-30
Release date:2017-04-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Unraveling the stereochemical and dynamic aspects of the catalytic site of bacterial peptidyl-tRNA hydrolase.
RNA, 23, 2017
4ZXP
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BU of 4zxp by Molmil
Crystal structure of Peptidyl- tRNA Hydrolase from Vibrio cholerae
Descriptor: CITRATE ANION, Peptidyl-tRNA hydrolase
Authors:Shahid, S, Pal, R.K, Kabra, A, Yadav, R, Kumar, A, Arora, A.
Deposit date:2015-05-20
Release date:2016-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Unraveling the stereochemical and dynamic aspects of the catalytic site of bacterial peptidyl-tRNA hydrolase.
RNA, 23, 2017
5GVZ
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Crystal structure of Peptidyl-tRNA hydrolase from Vibrio cholerae in space group C2221 at resolution 1.75A.
Descriptor: ACETATE ION, Peptidyl-tRNA hydrolase, SULFATE ION
Authors:Shahid, S, Kabra, A, Pal, R.K, Arora, A.
Deposit date:2016-09-07
Release date:2017-09-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of Peptidyl-tRNA hydrolase from Vibrio cholerae in space group C2221 at resolution 1.75A.
To Be Published
8TFE
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BU of 8tfe by Molmil
Crystal structure of Fab fragment of anti-HCV E2 antibody (CBH-7)
Descriptor: 1,2-ETHANEDIOL, CBH-7 Heavy chain, CBH-7 Light chain, ...
Authors:Shahid, S, Mariuzza, R.A.
Deposit date:2023-07-10
Release date:2024-07-17
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structure of Fab fragment of anti-HCV E2 antibody (CBH-7)
To Be Published
8TGV
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CryoEM structure of Fab HC84.26-HCV E2 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HC84.26 Heavy chain, ...
Authors:Shahid, S, Liqun, J, LIu, Y, Hasan, S.S, Mariuzza, R.A.
Deposit date:2023-07-13
Release date:2024-07-24
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:CryoEM structure of Fab HC84.26-HCV E2 complex
To Be Published
8TGZ
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BU of 8tgz by Molmil
CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HC84.26 Heavy chain, ...
Authors:Shahid, S, Liqun, J, Liu, Y, Hasan, S.S, Mariuzza, R.A.
Deposit date:2023-07-13
Release date:2024-07-24
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
To Be Published
8THZ
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BU of 8thz by Molmil
CryoEM structure of neutralizing antibodies CBH-7 and HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CBH-7 Heavy chain, ...
Authors:Shahid, S, Jiang, L, Liu, Y, Hasan, S.S, Mariuzza, R.A.
Deposit date:2023-07-18
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:CryoEM structure of neutralizing antibodies CBH-7 and HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
To Be Published
8TXQ
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BU of 8txq by Molmil
CryoEM structure of non-neutralizing antibody CBH-4B in complex with Hepatitis C virus envelope glycoprotein E2
Descriptor: CBH-4B Heavy chain, CBH-4B Light chain, envelope glycoprotein E2
Authors:Shahid, S, Liqun, J, Liu, Y, Hasan, S.S, Mariuzza, R.A.
Deposit date:2023-08-24
Release date:2024-08-28
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:CryoEM structure of non-neutralizing antibody CBH-4B in complex with Hepatitis C virus envelope glycoprotein E2
To Be Published
8TZY
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BU of 8tzy by Molmil
CryoEM structure of non-neutralizing bivalent antibody CBH-4B in complex with Hepatitis C virus envelope glycoprotein E2
Descriptor: CBH4B Heavy chain, CBH4B Light chain, envelope glycoprotein E2
Authors:Shahid, S, Liqun, J, Liu, Y, Hasan, S.S, Mariuzza, R.A.
Deposit date:2023-08-28
Release date:2024-09-04
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:CryoEM structure of non-neutralizing bivalent antibody CBH-4B in complex with Hepatitis C virus envelope glycoprotein E2
To Be Published
8U9Y
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BU of 8u9y by Molmil
CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2_New interface
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein E2, ...
Authors:Shahid, S, Liqun, J, Liu, Y, Hasan, S.S, Mariuzza, R.A.
Deposit date:2023-09-20
Release date:2024-09-25
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2_New interface
To Be Published
6X9X
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BU of 6x9x by Molmil
Crystal structure of Fab fragment of Anti-HCV E2 antibody (HC84.26)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, HC84.26 Fab Heavy Chain, ...
Authors:Shahid, S, Mariuzza, R.A.
Deposit date:2020-06-03
Release date:2020-12-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of a Bivalent Antibody Fab Fragment.
J.Mol.Biol., 433, 2020
5EKT
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BU of 5ekt by Molmil
Crystal structure of mutant-K146A of peptidyl-tRNA hydrolase from Vibrio cholerae at 1.63A resolution.
Descriptor: CITRATE ANION, Peptidyl-tRNA hydrolase
Authors:Shahid, S, Kabr, A, Pal, R.K, Arora, A.
Deposit date:2015-11-04
Release date:2016-11-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Crystal structure of mutant-K146A of peptidyl-tRNA hydrolase from Vibrio cholerae at 1.63A resolution.
To be published
3OV6
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BU of 3ov6 by Molmil
CD1c in complex with MPM (mannosyl-beta1-phosphomycoketide)
Descriptor: 1-O-[(S)-hydroxy{[(4S,8S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl]oxy}phosphoryl]-beta-D-mannopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, ...
Authors:Scharf, L, Li, N.S, Hawk, A.J, Garzon, D, Zhang, T, Kazen, A.R, Shah, S, Haddadian, E.J, Saghatelian, A, Faraldo-Gomez, J.D, Meredith, S.C, Piccirilli, J.A, Adams, E.J.
Deposit date:2010-09-15
Release date:2011-01-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:The 2.5 A structure of CD1c in complex with a mycobacterial lipid reveals an open groove ideally suited for diverse antigen presentation
Immunity, 33, 2010
4CV2
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BU of 4cv2 by Molmil
Crystal structure of E. coli FabI in complex with NADH and CG400549
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 1-(3-amino-2-methylbenzyl)-4-[2-(thiophen-2-yl)ethoxy]pyridin-2(1H)-one, ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]
Authors:Tareilus, M, Schiebel, J, Chang, A, Shah, S, Tonge, P.J, Kisker, C.
Deposit date:2014-03-22
Release date:2014-04-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Rational Design of Broad Spectrum Antibacterial Activity Based on a Clinically Relevant Enoyl-Acyl Carrier Protein (Acp) Reductase Inhibitor.
J.Biol.Chem., 289, 2014
4CV1
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BU of 4cv1 by Molmil
Crystal structure of S. aureus FabI in complex with NADPH and CG400549
Descriptor: 1,2-ETHANEDIOL, 1-(3-amino-2-methylbenzyl)-4-[2-(thiophen-2-yl)ethoxy]pyridin-2(1H)-one, CHLORIDE ION, ...
Authors:Schiebel, J, Chang, A, Shah, S, Tonge, P.J, Kisker, C.
Deposit date:2014-03-22
Release date:2014-04-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Rational Design of Broad Spectrum Antibacterial Activity Based on a Clinically Relevant Enoyl-Acyl Carrier Protein (Acp) Reductase Inhibitor.
J.Biol.Chem., 289, 2014
4CV3
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BU of 4cv3 by Molmil
Crystal structure of E. coli FabI in complex with NADH and PT166
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 2-hexyl-1-methyl-5-(2-methylphenoxy)pyridin-4(1H)-one, ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]
Authors:Eltschkner, S, Schiebel, J, Chang, A, Shah, S, Tonge, P.J, Kisker, C.
Deposit date:2014-03-22
Release date:2014-04-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Rational Design of Broad Spectrum Antibacterial Activity Based on a Clinically Relevant Enoyl-Acyl Carrier Protein (Acp) Reductase Inhibitor.
J.Biol.Chem., 289, 2014
4CV0
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BU of 4cv0 by Molmil
Crystal structure of S. aureus FabI in complex with NADPH and CG400549 (small unit cell)
Descriptor: 1,2-ETHANEDIOL, 1-(3-amino-2-methylbenzyl)-4-[2-(thiophen-2-yl)ethoxy]pyridin-2(1H)-one, ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH], ...
Authors:Schiebel, J, Chang, A, Shah, S, Tonge, P.J, Kisker, C.
Deposit date:2014-03-22
Release date:2014-04-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Rational Design of Broad Spectrum Antibacterial Activity Based on a Clinically Relevant Enoyl-Acyl Carrier Protein (Acp) Reductase Inhibitor.
J.Biol.Chem., 289, 2014
4CUZ
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BU of 4cuz by Molmil
Crystal structure of S. aureus FabI in complex with NADPH and PT173
Descriptor: 1-(3-amino-2-methylbenzyl)-4-hexylpyridin-2(1H)-one, ENOYL-ACP REDUCTASE MOLECULE ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH], NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Schiebel, J, Chang, A, Shah, S, Tonge, P.J, Kisker, C.
Deposit date:2014-03-22
Release date:2014-04-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Rational Design of Broad Spectrum Antibacterial Activity Based on a Clinically Relevant Enoyl-Acyl Carrier Protein (Acp) Reductase Inhibitor.
J.Biol.Chem., 289, 2014
4C3G
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BU of 4c3g by Molmil
cryo-EM structure of activated and oligomeric restriction endonuclease SgrAI
Descriptor: 5'-D(*CP*CP*GP*GP*TP*GP*TP*GP*AP*AP*GP*AP*CP*CP *CP*AP*CP*GP*CP*AP*TP*CP)-3', 5'-D(*GP*AP*TP*GP*CP*GP*TP*GP*GP*GP*TP*CP*TP*TP *CP*AP*CP*AP)-3', SGRAIR RESTRICTION ENZYME
Authors:Lyumkis, D, Talley, H, Stewart, A, Shah, S, Park, C.K, Tama, F, Potter, C.S, Carragher, B, Horton, N.C.
Deposit date:2013-08-23
Release date:2013-09-11
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Allosteric Regulation of DNA Cleavage and Sequence-Specificity Through Run-on Oligomerization.
Structure, 21, 2013

 

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