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PDB: 105 results

3FP3
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Crystal structure of Tom71
Descriptor: CHLORIDE ION, SULFATE ION, TPR repeat-containing protein YHR117W
Authors:Li, J, Qian, X, Hu, J, Sha, B.
Deposit date:2009-01-03
Release date:2009-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Molecular chaperone Hsp70/Hsp90 prepares the mitochondrial outer membrane translocon receptor Tom71 for preprotein loading.
J.Biol.Chem., 284, 2009
5V1D
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BU of 5v1d by Molmil
Complex structure of the bovine PERK luminal domain and its substrate peptide
Descriptor: 12-mer peptide, eIF2AK3 protein
Authors:Wang, P, Li, J, Sha, B.
Deposit date:2017-03-02
Release date:2018-02-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.799 Å)
Cite:The luminal domain of the ER stress sensor protein PERK binds misfolded proteins and thereby triggers PERK oligomerization
J. Biol. Chem., 293, 2018
5U2U
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BU of 5u2u by Molmil
Crystal structure of the Hsp104 N-terminal domain from Saccharomyces cerevisiae
Descriptor: Heat shock protein 104
Authors:Wang, P, Li, J, Sha, B.
Deposit date:2016-11-30
Release date:2017-04-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.541 Å)
Cite:Crystal structures of Hsp104 N-terminal domains from Saccharomyces cerevisiae and Candida albicans suggest the mechanism for the function of Hsp104 in dissolving prions.
Acta Crystallogr D Struct Biol, 73, 2017
3FP4
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Crystal structure of Tom71 complexed with Ssa1 C-terminal fragment
Descriptor: CHLORIDE ION, SODIUM ION, SULFATE ION, ...
Authors:Li, J, Qian, X, Hu, J, Sha, B.
Deposit date:2009-01-03
Release date:2009-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Molecular chaperone Hsp70/Hsp90 prepares the mitochondrial outer membrane translocon receptor Tom71 for preprotein loading.
J.Biol.Chem., 284, 2009
5U2L
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BU of 5u2l by Molmil
Crystal structure of the Hsp104 N-terminal domain from Candida albicans
Descriptor: Heat shock protein 104
Authors:Wang, P, Li, J, Sha, B.
Deposit date:2016-11-30
Release date:2017-04-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.6555 Å)
Cite:Crystal structures of Hsp104 N-terminal domains from Saccharomyces cerevisiae and Candida albicans suggest the mechanism for the function of Hsp104 in dissolving prions.
Acta Crystallogr D Struct Biol, 73, 2017
2B26
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BU of 2b26 by Molmil
The crystal structure of the protein complex of yeast Hsp40 Sis1 and Hsp70 Ssa1
Descriptor: Heat shock 70 kDa protein cognate 2, SIS1 protein
Authors:Li, J, Wu, Y, Qian, X, Sha, B.
Deposit date:2005-09-16
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of yeast Sis1 peptide-binding fragment and Hsp70 Ssa1 C-terminal complex.
Biochem.J., 398, 2006
3QML
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The structural analysis of Sil1-Bip complex reveals the mechanism for Sil1 to function as a novel nucleotide exchange factor
Descriptor: 78 kDa glucose-regulated protein homolog, MAGNESIUM ION, Nucleotide exchange factor SIL1, ...
Authors:Yan, M, Li, J.Z, Sha, B.D.
Deposit date:2011-02-04
Release date:2011-06-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural analysis of the Sil1-Bip complex reveals the mechanism for Sil1 to function as a nucleotide-exchange factor.
Biochem.J., 438, 2011
3QFP
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BU of 3qfp by Molmil
Crystal structure of yeast Hsp70 (Bip/Kar2) ATPase domain
Descriptor: 78 kDa glucose-regulated protein homolog, PHOSPHATE ION
Authors:Yan, M, Li, J.Z, Sha, B.D.
Deposit date:2011-01-22
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural analysis of the Sil1-Bip complex reveals the mechanism for Sil1 to function as a nucleotide-exchange factor.
Biochem.J., 438, 2011
2FXT
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BU of 2fxt by Molmil
Crystal Structure of Yeast Tim44
Descriptor: Import inner membrane translocase subunit TIM44
Authors:Josyula, R, Sha, B.
Deposit date:2006-02-06
Release date:2007-02-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of Yeast Mitochondrial Peripheral Membrane Protein Tim44p C-terminal Domain.
J.Mol.Biol., 359, 2006
3QK9
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BU of 3qk9 by Molmil
Yeast Tim44 C-terminal domain complexed with Cymal-3
Descriptor: CHLORIDE ION, Mitochondrial import inner membrane translocase subunit TIM44
Authors:Cui, W, Josyula, R, Fu, Z, Sha, B.
Deposit date:2011-01-31
Release date:2011-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Membrane Binding Mechanism of Yeast Mitochondrial Peripheral Membrane Protein TIM44.
Protein Pept.Lett., 18, 2011
1TOV
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BU of 1tov by Molmil
Structural genomics of Caenorhabditis elegans: CAP-GLY domain of F53F4.3
Descriptor: Hypothetical protein F53F4.3 in chromosome V, SULFATE ION
Authors:Li, S, Finley, J, Liu, Z.J, Qiu, S.H, Luan, C.H, Carson, M, Tsao, J, Johnson, D, Lin, G, Zhao, J, Thomas, W, Nagy, L.A, Sha, B, Delucas, L.J, Richardson, D, Richardson, J, Wang, B.C, Luo, M, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-06-15
Release date:2004-07-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal Structure of the Cytoskeleton-Associated Protein Glycine-Rich (CAP-Gly) Domain
J.Biol.Chem., 277, 2002
3QFU
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Crystal structure of Yeast Hsp70 (Bip/kar2) complexed with ADP
Descriptor: 78 kDa glucose-regulated protein homolog, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Yan, M, Li, J.Z, Sha, B.D.
Deposit date:2011-01-22
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of the Sil1-Bip complex reveals the mechanism for Sil1 to function as a nucleotide-exchange factor.
Biochem.J., 438, 2011
3QLE
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BU of 3qle by Molmil
Structural Basis for the Function of Tim50 in the Mitochondrial Presequence Translocase
Descriptor: ACETATE ION, CALCIUM ION, PENTAETHYLENE GLYCOL, ...
Authors:Qian, X.G, Gebert, M, Hpker, J, Yan, M, Li, J.Z, Wiedemann, N, Laan, M.V.D, Pfanner, N, Sha, B.D.
Deposit date:2011-02-02
Release date:2011-03-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.831 Å)
Cite:Structural basis for the function of tim50 in the mitochondrial presequence translocase.
J.Mol.Biol., 411, 2011
2QLD
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BU of 2qld by Molmil
human Hsp40 Hdj1
Descriptor: DnaJ homolog subfamily B member 1
Authors:Hu, J, Wu, Y, Li, J, Fu, Z, Sha, B.
Deposit date:2007-07-12
Release date:2008-07-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The crystal structure of the putative peptide-binding fragment from the human Hsp40 protein Hdj1.
Bmc Struct.Biol., 8, 2008
8DC2
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BU of 8dc2 by Molmil
Cryo-EM structure of CasLambda (Cas12l) bound to crRNA and DNA
Descriptor: CasLambda, DNA NTS, DNA TS, ...
Authors:Al-Shayeb, B, Skopintsev, P, Soczek, K, Doudna, J.
Deposit date:2022-06-15
Release date:2022-12-14
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Diverse virus-encoded CRISPR-Cas systems include streamlined genome editors.
Cell, 185, 2022
6WPN
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BU of 6wpn by Molmil
Crystal structure of a putative oligosaccharide periplasmic-binding protein from Synechococcus sp. MITs9220
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Substrate-binding protein
Authors:Ford, B.A, Michie, K.A, Paulsen, I.T, Mabbutt, B.C, Shah, B.S.
Deposit date:2020-04-27
Release date:2021-05-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Novel functional insights into a modified sugar-binding protein from Synechococcus MITS9220.
Sci Rep, 12, 2022
6OSK
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BU of 6osk by Molmil
RF1 accommodated 70S complex at 60 ms
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J.
Deposit date:2019-05-01
Release date:2019-06-26
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6OSQ
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BU of 6osq by Molmil
RF1 accommodated state bound Release complex 70S at long incubation time point
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J.
Deposit date:2019-05-02
Release date:2019-06-26
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6OUO
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BU of 6ouo by Molmil
RF2 accommodated state bound 70S complex at long incubation time
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J.
Deposit date:2019-05-05
Release date:2019-06-19
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6VAR
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BU of 6var by Molmil
61 nt human Hepatitis B virus epsilon pre-genomic RNA
Descriptor: RNA (61-MER)
Authors:LeBlanc, R.M, Kasprzak, W.K, Longhini, A.P, Abulwerdi, F, Ginocchio, S, Shields, B, Nyman, J, Svirydava, M, Del Vecchio, C, Ivanic, J, Schneekloth, J.S, Dayie, T.K, Shapiro, B.A, Le Grice, S.F.J.
Deposit date:2019-12-17
Release date:2020-12-30
Last modified:2024-05-15
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Structural insights of the conserved "priming loop" of hepatitis B virus pre-genomic RNA.
J.Biomol.Struct.Dyn., 2021
6ORL
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BU of 6orl by Molmil
RF1 pre-accommodated 70S complex at 24 ms
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J.
Deposit date:2019-04-30
Release date:2019-06-19
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6OT3
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BU of 6ot3 by Molmil
RF2 accommodated state bound Release complex 70S at 24 ms
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J.
Deposit date:2019-05-02
Release date:2019-06-19
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6OST
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BU of 6ost by Molmil
RF2 pre-accommodated state bound Release complex 70S at 24ms
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J.
Deposit date:2019-05-02
Release date:2019-06-19
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6WPM
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BU of 6wpm by Molmil
Crystal structure of a putative oligosaccharide periplasmic-binding protein from Synechococcus sp. MITs9220 in complex with zinc
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, SULFATE ION, ...
Authors:Ford, B.A, Michie, K.A, Paulsen, I.T, Mabbutt, B.C, Shah, B.S.
Deposit date:2020-04-27
Release date:2021-05-12
Last modified:2022-04-27
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Novel functional insights into a modified sugar-binding protein from Synechococcus MITS9220.
Sci Rep, 12, 2022
1FYU
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BU of 1fyu by Molmil
Crystal structure of erythrina corallodendron lectin in hexagonal crystal form
Descriptor: CALCIUM ION, LECTIN, MANGANESE (II) ION, ...
Authors:Elgavish, S, Shaanan, B.
Deposit date:2000-10-03
Release date:2000-10-25
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Chemical characteristics of dimer interfaces in the legume lectin family.
Protein Sci., 10, 2001

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