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PDB: 159 件

8EBL
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Structure of KLHDC2 substrate binding domain bound to C-degron from EPHB2
分子名称: GLU-ASP-SER-HIS-LYS-GLU-SER-ASN-ASP-CYS-SER-CYS-GLY-GLY, Kelch domain-containing protein 2
著者Scott, D.C, Schulman, B.A.
登録日2022-08-31
公開日2023-02-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献E3 ligase autoinhibition by C-degron mimicry maintains C-degron substrate fidelity.
Mol.Cell, 83, 2023
8QBN
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Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to YPEL5
分子名称: Protein yippee-like 5, WD repeat-containing protein 26, ZINC ION
著者Chrustowicz, J, Sherpa, D, Schulman, B.A.
登録日2023-08-24
公開日2024-05-15
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Non-canonical substrate recognition by the human WDR26-CTLH E3 ligase regulates prodrug metabolism.
Mol.Cell, 84, 2024
4YII
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BU of 4yii by Molmil
Structure of an APC2-UBCH10 complex reveals distinctive cullin-RING ligase mechanism for Anaphase-promoting complex/Cyclosome
分子名称: Anaphase-promoting complex subunit 2, Ubiquitin-conjugating enzyme E2 C
著者Brown, N.G, Cho, S.E, Schulman, B.A.
登録日2015-03-02
公開日2015-04-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.804 Å)
主引用文献Crystal Structure of E2 Complex
Proc.Natl.Acad.Sci.USA, 2015
8C07
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BU of 8c07 by Molmil
Structure of HECT E3 UBR5 forming K48 linked Ubiquitin chains
分子名称: 5-azanylpentan-2-one, E3 ubiquitin-protein ligase UBR5, Polyubiquitin-B
著者Hehl, L.A, Prabu, J.R, Schulman, B.A.
登録日2022-12-16
公開日2023-08-23
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural snapshots along K48-linked ubiquitin chain formation by the HECT E3 UBR5.
Nat.Chem.Biol., 20, 2024
8QE8
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BU of 8qe8 by Molmil
Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to NMNAT1 substrate
分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1, WD repeat-containing protein 26, ...
著者Chrustowicz, J, Sherpa, D, Schulman, B.A.
登録日2023-08-30
公開日2024-05-15
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Non-canonical substrate recognition by the human WDR26-CTLH E3 ligase regulates prodrug metabolism.
Mol.Cell, 84, 2024
6WY6
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BU of 6wy6 by Molmil
Crystal structure of S. cerevisiae Atg8 in complex with Ede1 (1220-1247)
分子名称: Autophagy-related protein 8, EH domain-containing and endocytosis protein 1
著者Zheng, Y, Wilfling, F, Baumeister, W, Schulman, B.A.
登録日2020-05-12
公開日2020-12-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.773 Å)
主引用文献A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits.
Mol.Cell, 80, 2020
7Q51
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BU of 7q51 by Molmil
yeast Gid10 bound to a Phe/N-peptide
分子名称: CHLORIDE ION, FWLPANLW peptide, Uncharacterized protein YGR066C
著者Chrustowicz, J, Sherpa, D, Prabu, J.R, Schulman, B.A.
登録日2021-11-02
公開日2022-03-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Multifaceted N-Degron Recognition and Ubiquitylation by GID/CTLH E3 Ligases.
J.Mol.Biol., 434, 2022
7Q50
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BU of 7q50 by Molmil
human Gid4 bound to a Phe/N-peptide
分子名称: FDVSWFMG peptide, Glucose-induced degradation protein 4 homolog
著者Chrustowicz, J, Sherpa, D, Loke, M.S, Prabu, J.R, Schulman, B.A.
登録日2021-11-02
公開日2022-03-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.16 Å)
主引用文献Multifaceted N-Degron Recognition and Ubiquitylation by GID/CTLH E3 Ligases.
J.Mol.Biol., 434, 2022
7QQY
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BU of 7qqy by Molmil
yeast Gid10 bound to Art2 Pro/N-degron
分子名称: CHLORIDE ION, ECM21, Uncharacterized protein YGR066C
著者Chrustowicz, J, Sherpa, D, Schulman, B.A.
登録日2022-01-10
公開日2022-03-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.26 Å)
主引用文献A GID E3 ligase assembly ubiquitinates an Rsp5 E3 adaptor and regulates plasma membrane transporters.
Embo Rep., 23, 2022
7Q4Y
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BU of 7q4y by Molmil
human Gid4 bound to a Gly/N-peptide
分子名称: Glucose-induced degradation protein 4 homolog
著者Sherpa, D, Chrustowicz, J, Prabu, J.R, Schulman, B.A.
登録日2021-11-02
公開日2022-03-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献Multifaceted N-Degron Recognition and Ubiquitylation by GID/CTLH E3 Ligases.
J.Mol.Biol., 434, 2022
6BG5
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BU of 6bg5 by Molmil
Structure of 1-(benzo[d][1,3]dioxol-5-ylmethyl)-1-(1-propylpiperidin-4-yl)-3-(3-(trifluoromethyl)phenyl)urea bound to DCN1
分子名称: Endolysin, DCN1-like protein 1 chimera, N-[(2H-1,3-benzodioxol-5-yl)methyl]-N-(1-propylpiperidin-4-yl)-N'-[3-(trifluoromethyl)phenyl]urea
著者Guy, R.K, Schulman, B.A, Scott, D.C, Hammill, J.T.
登録日2017-10-27
公開日2018-09-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Piperidinyl Ureas Chemically Control Defective in Cullin Neddylation 1 (DCN1)-Mediated Cullin Neddylation.
J. Med. Chem., 61, 2018
8Q7E
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BU of 8q7e by Molmil
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
分子名称: Cullin-9, E3 ubiquitin-protein ligase RBX1
著者Hopf, L.V.M, Horn-Ghetko, D, Schulman, B.A.
登録日2023-08-16
公開日2024-04-17
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Noncanonical assembly, neddylation and chimeric cullin-RING/RBR ubiquitylation by the 1.8 MDa CUL9 E3 ligase complex.
Nat.Struct.Mol.Biol., 31, 2024
8Q7H
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BU of 8q7h by Molmil
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
分子名称: Cullin-9, E3 ubiquitin-protein ligase RBX1, NEDD8, ...
著者Hopf, L.V.M, Horn-Ghetko, D, Schulman, B.A.
登録日2023-08-16
公開日2024-04-17
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Noncanonical assembly, neddylation and chimeric cullin-RING/RBR ubiquitylation by the 1.8 MDa CUL9 E3 ligase complex.
Nat.Struct.Mol.Biol., 31, 2024
7Z8R
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BU of 7z8r by Molmil
CAND1-CUL1-RBX1
分子名称: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
著者Baek, K, Schulman, B.A.
登録日2022-03-18
公開日2023-04-19
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023
1Y8X
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BU of 1y8x by Molmil
Structural basis for recruitment of Ubc12 by an E2-binding domain in NEDD8's E1
分子名称: Ubiquitin-activating enzyme E1C, Ubiquitin-conjugating enzyme E2 M
著者Huang, D.T, Paydar, A, Zhuang, M, Waddell, M.B, Holton, J.M, Schulman, B.A.
登録日2004-12-13
公開日2005-02-08
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1.
Mol.Cell, 17, 2005
7ZBZ
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BU of 7zbz by Molmil
CAND1 delhairpin-SCF-SKP2 CAND1 partly engaged SCF partly rocked
分子名称: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
著者Baek, K, Schulman, B.A.
登録日2022-03-24
公開日2023-04-19
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023
7Z8V
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BU of 7z8v by Molmil
CAND1-SCF-SKP2 (SKP1deldel) CAND1 engaged SCF rocked
分子名称: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
著者Baek, K, Schulman, B.A.
登録日2022-03-18
公開日2023-04-19
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023
7Z8T
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BU of 7z8t by Molmil
CAND1-SCF-SKP2 CAND1 engaged SCF rocked
分子名称: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
著者Baek, K, Schulman, B.A.
登録日2022-03-18
公開日2023-04-19
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023
7ZBW
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BU of 7zbw by Molmil
CAND1-SCF-SKP2 CAND1 rolling-2 SCF engaged
分子名称: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
著者Baek, K, Schulman, B.A.
登録日2022-03-24
公開日2023-04-19
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023
8EBN
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BU of 8ebn by Molmil
Structure of KLHDC2-EloB/C tetrameric assembly
分子名称: Elongin-B, Elongin-C, Kelch domain-containing protein 2
著者Scott, D.C, Schulman, B.A.
登録日2022-08-31
公開日2023-02-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献E3 ligase autoinhibition by C-degron mimicry maintains C-degron substrate fidelity.
Mol.Cell, 83, 2023
6BG3
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BU of 6bg3 by Molmil
Structure of (3S,4S)-1-benzyl-4-(3-(3-(trifluoromethyl)phenyl)ureido)piperidin-3-yl acetate bound to DCN1
分子名称: Endolysin, DCN1-like protein 1 chimera, N-{(3S,4S)-1-benzyl-3-[(1S)-1-hydroxyethoxy]piperidin-4-yl}-N'-[3-(trifluoromethyl)phenyl]urea
著者Guy, R.K, Schulman, B.A, Scott, D.C, Hammill, J.T.
登録日2017-10-27
公開日2018-09-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Piperidinyl Ureas Chemically Control Defective in Cullin Neddylation 1 (DCN1)-Mediated Cullin Neddylation.
J. Med. Chem., 61, 2018
9BC9
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BU of 9bc9 by Molmil
Structure of KLHDC2 bound to SJ10278
分子名称: COBALT HEXAMMINE(III), Kelch domain-containing protein 2, N-({2-[2-chloro-4-(methoxymethoxy)phenyl]-1,3-thiazol-4-yl}acetyl)glycine
著者Scott, D.C, Dharuman, S, Griffith, E, Chai, S.C, Ronnebaum, J, King, M.T, Tangallapally, R, Lee, C, Gee, C.T, Lee, H.W, Ochoada, J, Miller, D.J, Jayasinghe, T, Paulo, J.A, Elledge, S.J, Harper, J.W, Chen, T, Lee, R.E, Schulman, B.A.
登録日2024-04-08
公開日2024-11-06
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Principles of isoform-specific targeted protein degradation engaging the C-degron E3 KLHDC2
To Be Published
9BCC
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BU of 9bcc by Molmil
Structure of KLHDC2 bound to SJ46418
分子名称: COBALT HEXAMMINE(III), Kelch domain-containing protein 2, N-({2-[8-(2-methoxyethoxy)naphthalen-2-yl]-1,3-thiazol-4-yl}acetyl)glycine
著者Scott, D.C, Dharuman, S, Griffith, E, Chai, S.C, Ronnebaum, J, King, M.T, Tangallapally, R, Lee, C, Gee, C.T, Lee, H.W, Ochoada, J, Miller, D.J, Jayasinghe, T, Paulo, J.A, Elledge, S.J, Harper, J.W, Chen, T, Lee, R.E, Schulman, B.A.
登録日2024-04-08
公開日2024-11-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Principles of isoform-specific targeted protein degradation engaging the C-degron E3 KLHDC2
To Be Published
8RHZ
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BU of 8rhz by Molmil
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
分子名称: Cullin-9, E3 ubiquitin-protein ligase RBX1, ZINC ION
著者Hopf, L.V.M, Horn-Ghetko, D, Prabu, J.R, Schulman, B.A.
登録日2023-12-17
公開日2024-04-17
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献Noncanonical assembly, neddylation and chimeric cullin-RING/RBR ubiquitylation by the 1.8 MDa CUL9 E3 ligase complex.
Nat.Struct.Mol.Biol., 31, 2024
9BCA
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BU of 9bca by Molmil
Structure of KLHDC2 bound to SJ46411
分子名称: COBALT HEXAMMINE(III), Kelch domain-containing protein 2, N-{[2-(naphthalen-2-yl)-1,3-thiazol-4-yl]acetyl}glycine
著者Scott, D.C, Dharuman, S, Griffith, E, Chai, S.C, Ronnebaum, J, King, M.T, Tangallapally, R, Lee, C, Gee, C.T, Lee, H.W, Ochoada, J, Miller, D.J, Jayasinghe, T, Paulo, J.A, Elledge, S.J, Harper, J.W, Chen, T, Lee, R.E, Schulman, B.A.
登録日2024-04-08
公開日2024-11-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Principles of isoform-specific targeted protein degradation engaging the C-degron E3 KLHDC2
To Be Published

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件を2024-11-06に公開中

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