Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 567 results

9BE2
DownloadVisualize
BU of 9be2 by Molmil
Structure of the E. coli nucleic associated protein, YejK
Descriptor: Nucleoid-associated protein YejK
Authors:Schumacher, M.A.
Deposit date:2024-04-13
Release date:2024-05-15
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (3.56 Å)
Cite:Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.
Nucleic Acids Res., 52, 2024
5K5O
DownloadVisualize
BU of 5k5o by Molmil
Structure of AspA-26mer DNA complex
Descriptor: AspA, DNA (26-MER)
Authors:Schumacher, M.
Deposit date:2016-05-23
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structures of archaeal DNA segregation machinery reveal bacterial and eukaryotic linkages.
Science, 349, 2015
6NOP
DownloadVisualize
BU of 6nop by Molmil
Structure of Cyanothece McdA(D38A)-ATP complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cobyrinic acid ac-diamide synthase, MAGNESIUM ION
Authors:Schumacher, M.A.
Deposit date:2019-01-16
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs.
Nucleic Acids Res., 47, 2019
8V4G
DownloadVisualize
BU of 8v4g by Molmil
X-ray structure of the NADP-dependent reductase from Campylobacter jejuni responsible for the synthesis of CDP-glucitol in the presence of CDP and NADP
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CYTIDINE-5'-DIPHOSPHATE, ...
Authors:Schumann, M.E, Thoden, J.B, Holden, H.M, Raushel, F.M.
Deposit date:2023-11-29
Release date:2023-12-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Biosynthesis of Cytidine Diphosphate-6-d-Glucitol for the Capsular Polysaccharides of Campylobacter jejuni.
Biochemistry, 63, 2024
6UEP
DownloadVisualize
BU of 6uep by Molmil
Structure of A. thaliana TBP bound to a DNA site with a C-C mismatch
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*CP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*CP*TP*TP*TP*AP*TP*AP*GP*C)-3'), FORMIC ACID, ...
Authors:Schumacher, M.A, Al-hashimi, H.
Deposit date:2019-09-22
Release date:2020-09-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature, 587, 2020
6UEO
DownloadVisualize
BU of 6ueo by Molmil
Structure of A. thaliana TBP-AC mismatch DNA site
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*CP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TATA-box-binding protein 1
Authors:Schumacher, M.A.
Deposit date:2019-09-22
Release date:2020-09-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature, 587, 2020
6UER
DownloadVisualize
BU of 6uer by Molmil
Crystal form 2: Structure of TBP bound to C-C mismatch at pH 7
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*CP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*CP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TATA-box-binding protein 1
Authors:Schumacher, M.A, Al-Hashimi, H.
Deposit date:2019-09-22
Release date:2020-09-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature, 587, 2020
6UEQ
DownloadVisualize
BU of 6ueq by Molmil
Structure of TBP bound to C-C mismatch containing TATA site
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*CP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3'), SULFATE ION, ...
Authors:Schumacher, M.A, Al-Hashimi, H.
Deposit date:2019-09-22
Release date:2020-09-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature, 587, 2020
3BTC
DownloadVisualize
BU of 3btc by Molmil
crystal structure of QacR(E57Q) bound to malachite green
Descriptor: HTH-type transcriptional regulator qacR, MALACHITE GREEN, SULFATE ION
Authors:Schumacher, M.A, Schuman, J.T, Brennan, R.G.
Deposit date:2007-12-28
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization
Biochemistry, 47, 2008
3BTJ
DownloadVisualize
BU of 3btj by Molmil
crystal structure of QacR(E58Q) bound to dequalinium
Descriptor: DEQUALINIUM, HTH-type transcriptional regulator qacR, SULFATE ION
Authors:Schumacher, M.A, Schuman, J.T, Brennan, R.G.
Deposit date:2007-12-28
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization
Biochemistry, 47, 2008
3BTL
DownloadVisualize
BU of 3btl by Molmil
crystal structure of QacR(E58Q) bound to malachite green
Descriptor: HTH-type transcriptional regulator qacR, MALACHITE GREEN, SULFATE ION
Authors:Schumacher, M.A, Schuman, J.T, Brennan, R.G.
Deposit date:2007-12-28
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization
Biochemistry, 47, 2008
6NJQ
DownloadVisualize
BU of 6njq by Molmil
Structure of TBP-Hoogsteen containing DNA complex
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*CP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*GP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TATA-box-binding protein 1
Authors:Schumacher, M.A, Stelling, A.
Deposit date:2019-01-04
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Infrared Spectroscopic Observation of a G-C+Hoogsteen Base Pair in the DNA:TATA-Box Binding Protein Complex Under Solution Conditions.
Angew.Chem.Int.Ed.Engl., 58, 2019
6NON
DownloadVisualize
BU of 6non by Molmil
Structure of Cyanthece apo McdA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cobyrinic acid ac-diamide synthase, MAGNESIUM ION
Authors:Schumacher, M.A.
Deposit date:2019-01-16
Release date:2019-04-24
Last modified:2019-06-26
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs.
Nucleic Acids Res., 47, 2019
7U3A
DownloadVisualize
BU of 7u3a by Molmil
Structure of the Streptomyces venezuelae GlgX-c-di-GMP complex
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Glycogen debranching enzyme GlgX
Authors:Schumacher, M.A.
Deposit date:2022-02-26
Release date:2022-10-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Allosteric regulation of glycogen breakdown by the second messenger cyclic di-GMP.
Nat Commun, 13, 2022
3BTI
DownloadVisualize
BU of 3bti by Molmil
crystal structure of QacR(E58Q) bound to berberine
Descriptor: BERBERINE, HTH-type transcriptional regulator qacR, SULFATE ION
Authors:Schumacher, M.A, Schuman, J.T, Brennan, R.G.
Deposit date:2007-12-28
Release date:2008-08-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization
Biochemistry, 47, 2008
6WEG
DownloadVisualize
BU of 6weg by Molmil
Structure of Ft (MglA-SspA)-ppGpp-PigR peptide complex
Descriptor: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, MglA, ...
Authors:Schumacher, M.A, Brennan, R.
Deposit date:2020-04-02
Release date:2020-11-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural Basis for Virulence Activation of Francisella tularensis.
Mol.Cell, 81, 2021
7U3D
DownloadVisualize
BU of 7u3d by Molmil
Structure of S. venezuelae GlgX-c-di-GMP-acarbose complex (4.6)
Descriptor: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Glycogen debranching enzyme GlgX
Authors:Schumacher, M.A.
Deposit date:2022-02-27
Release date:2022-10-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Allosteric regulation of glycogen breakdown by the second messenger cyclic di-GMP.
Nat Commun, 13, 2022
7U3B
DownloadVisualize
BU of 7u3b by Molmil
Structure of S. venezuelae GlgX bound to c-di-GMP and acarbose (pH 8.5)
Descriptor: 4-O-(4,6-dideoxy-4-{[(1S,2S,3S,4R,5S)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-D-glucopyranosyl)-beta-D-glucopyranose, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Glycogen debranching enzyme GlgX, ...
Authors:Schumacher, M.A, Tschowri, N.
Deposit date:2022-02-26
Release date:2022-10-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Allosteric regulation of glycogen breakdown by the second messenger cyclic di-GMP.
Nat Commun, 13, 2022
7U39
DownloadVisualize
BU of 7u39 by Molmil
Structure of the apo form of Streptomyces venezuelae GlgX, the glycogen debranching enzyme
Descriptor: Glycogen debranching enzyme GlgX
Authors:Schumacher, M.A.
Deposit date:2022-02-26
Release date:2022-10-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Allosteric regulation of glycogen breakdown by the second messenger cyclic di-GMP.
Nat Commun, 13, 2022
7LQ2
DownloadVisualize
BU of 7lq2 by Molmil
Apo Rr RsiG- crystal form 1
Descriptor: ISOPROPYL ALCOHOL, MAGNESIUM ION, RR RsiG
Authors:Schumacher, M.A, Brennan, R.G.
Deposit date:2021-02-12
Release date:2021-07-14
Last modified:2021-08-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Evolution of a sigma-(c-di-GMP)-anti-sigma switch.
Proc.Natl.Acad.Sci.USA, 118, 2021
7LQ4
DownloadVisualize
BU of 7lq4 by Molmil
Rr (RsiG)2-(c-di-GMP)2-WhiG complex
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), RsiG, WhiG
Authors:Schumacher, M.A, Brennan, R.G.
Deposit date:2021-02-12
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Evolution of a sigma-(c-di-GMP)-anti-sigma switch.
Proc.Natl.Acad.Sci.USA, 118, 2021
7LQ3
DownloadVisualize
BU of 7lq3 by Molmil
Evolution of a sigma-(c-di-GMP)-antisigma switch
Descriptor: MAGNESIUM ION, RsiG, SULFATE ION
Authors:Schumacher, M.A, Brennan, R.G.
Deposit date:2021-02-12
Release date:2021-07-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Evolution of a sigma-(c-di-GMP)-anti-sigma switch.
Proc.Natl.Acad.Sci.USA, 118, 2021
8CDG
DownloadVisualize
BU of 8cdg by Molmil
Crystal structure of human IL-17A cytokine in complex with macrocycle
Descriptor: (9~{S},12~{R},19~{S})-9-[[4-[[(2~{S})-2-cyclohexyl-2-(2-phenylethanoylamino)ethanoyl]amino]phenyl]methyl]-12-methyl-7,10,13,21-tetrakis(oxidanylidene)-8,11,14,20-tetrazaspiro[4.17]docosane-19-carboxylic acid, Interleukin-17A
Authors:Schulze, M.-S.
Deposit date:2023-01-30
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Modulation of IL-17 backbone dynamics reduces receptor affinity and reveals a new inhibitory mechanism.
Chem Sci, 14, 2023
8TFK
DownloadVisualize
BU of 8tfk by Molmil
Cryo-EM structure of the Methanosarcina mazei glutamine synthetase (GS) with Met-Sox-P and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Glutamine synthetase, L-METHIONINE-S-SULFOXIMINE PHOSPHATE, ...
Authors:Schumacher, M.A.
Deposit date:2023-07-11
Release date:2023-11-15
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation.
Nat Commun, 14, 2023
8TFB
DownloadVisualize
BU of 8tfb by Molmil
Cryo-EM structure of the Methanosarcina mazei apo glutamin synthetase structure: dodecameric form
Descriptor: Glutamine synthetase, MAGNESIUM ION
Authors:Schumacher, M.A.
Deposit date:2023-07-09
Release date:2023-11-15
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation.
Nat Commun, 14, 2023

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon