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PDB: 567 results

4KOA
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BU of 4koa by Molmil
Crystal Structure Analysis of 1,5-anhydro-D-fructose reductase from Sinorhizobium meliloti
Descriptor: 1,5-anhydro-D-fructose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Schu, M, Faust, A, Stosik, B, Kohring, G.-W, Giffhorn, F, Scheidig, A.J.
Deposit date:2013-05-11
Release date:2013-08-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:The structure of substrate-free 1,5-anhydro-D-fructose reductase from Sinorhizobium meliloti 1021 reveals an open enzyme conformation.
Acta Crystallogr.,Sect.F, 69, 2013
3VEA
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BU of 3vea by Molmil
Crystal Structure of matP-matS23mer
Descriptor: 5'-D(*AP*GP*TP*TP*CP*GP*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*CP*GP*AP*AP*CP*T)-3', 5'-D(*AP*GP*TP*TP*CP*GP*TP*GP*AP*CP*AP*TP*TP*GP*TP*CP*AP*CP*GP*AP*AP*CP*T)-3', Macrodomain Ter protein
Authors:Schumacher, M.A.
Deposit date:2012-01-07
Release date:2012-11-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Molecular basis for a protein-mediated DNA-bridging mechanism that functions in condensation of the E. coli chromosome.
Mol.Cell, 48, 2012
3VEB
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BU of 3veb by Molmil
Crystal Structure of Matp-matS
Descriptor: 5'-D(*AP*CP*GP*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*CP*G)-3', 5'-D(*TP*CP*GP*TP*GP*AP*CP*AP*TP*TP*GP*TP*CP*AP*CP*G)-3', CALCIUM ION, ...
Authors:Schumacher, M.A.
Deposit date:2012-01-07
Release date:2012-11-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular basis for a protein-mediated DNA-bridging mechanism that functions in condensation of the E. coli chromosome.
Mol.Cell, 48, 2012
1J4X
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BU of 1j4x by Molmil
HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE C124S MUTANT-PEPTIDE COMPLEX
Descriptor: DDE(AHP)(TPO)G(PTR)VATR, DUAL SPECIFICITY PROTEIN PHOSPHATASE 3
Authors:Schumacher, M.A, Todd, J.L, Tanner, K.G, Denu, J.M.
Deposit date:2001-12-13
Release date:2001-12-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for the recognition of a bisphosphorylated MAP kinase peptide by human VHR protein Phosphatase.
Biochemistry, 41, 2002
6NOO
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BU of 6noo by Molmil
Structure of Cyanothece McdA-AMPPNP complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Maintenance of carboxysome positioning A protein, ...
Authors:Schumacher, M.A.
Deposit date:2019-01-16
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs.
Nucleic Acids Res., 47, 2019
6UEP
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BU of 6uep by Molmil
Structure of A. thaliana TBP bound to a DNA site with a C-C mismatch
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*CP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*CP*TP*TP*TP*AP*TP*AP*GP*C)-3'), FORMIC ACID, ...
Authors:Schumacher, M.A, Al-hashimi, H.
Deposit date:2019-09-22
Release date:2020-09-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature, 587, 2020
6NOP
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BU of 6nop by Molmil
Structure of Cyanothece McdA(D38A)-ATP complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cobyrinic acid ac-diamide synthase, MAGNESIUM ION
Authors:Schumacher, M.A.
Deposit date:2019-01-16
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs.
Nucleic Acids Res., 47, 2019
6GY1
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BU of 6gy1 by Molmil
rat COMT in complex with inhibitor
Descriptor: 7-fluoranyl-5-(4-methylphenyl)sulfonyl-quinolin-8-ol, Catechol O-methyltransferase, DIMETHYL SULFOXIDE, ...
Authors:Schulze, M.-S.
Deposit date:2018-06-27
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Optimization of 8-Hydroxyquinolines as Inhibitors of Catechol O-Methyltransferase.
J. Med. Chem., 61, 2018
1WET
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BU of 1wet by Molmil
STRUCTURE OF THE PURR-GUANINE-PURF OPERATOR COMPLEX
Descriptor: DNA (5'-D(*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*TP*TP*TP*TP*CP*GP*T )-3'), GUANINE, PROTEIN (PURINE REPRESSOR)
Authors:Schumacher, M.A, Glasfeld, A, Zalkin, H, Brennan, R.G.
Deposit date:1997-04-27
Release date:1997-11-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The X-ray structure of the PurR-guanine-purF operator complex reveals the contributions of complementary electrostatic surfaces and a water-mediated hydrogen bond to corepressor specificity and binding affinity.
J.Biol.Chem., 272, 1997
3MKW
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BU of 3mkw by Molmil
Structure of sopB(155-272)-18mer complex, I23 form
Descriptor: DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3'), Protein sopB, SULFATE ION
Authors:Schumacher, M.A, Piro, K, Xu, W.
Deposit date:2010-04-15
Release date:2010-05-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Insight into F plasmid DNA segregation revealed by structures of SopB and SopB-DNA complexes.
Nucleic Acids Res., 38, 2010
2GID
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BU of 2gid by Molmil
Crystal structures of trypanosoma bruciei MRP1/MRP2
Descriptor: mitochondrial RNA-binding protein 1, mitochondrial RNA-binding protein 2
Authors:Schumacher, M.A, Karamooz, E, Zikova, A, Trantirek, L, Lukes, J.
Deposit date:2006-03-28
Release date:2006-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Crystal Structures of T. brucei MRP1/MRP2 Guide-RNA Binding Complex Reveal RNA Matchmaking Mechanism.
Cell(Cambridge,Mass.), 126, 2006
3M9A
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BU of 3m9a by Molmil
Protein structure of type III plasmid segregation TubR
Descriptor: Putative DNA-binding protein
Authors:Schumacher, M.A, Ni, L.
Deposit date:2010-03-21
Release date:2010-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:From the Cover: Plasmid protein TubR uses a distinct mode of HTH-DNA binding and recruits the prokaryotic tubulin homolog TubZ to effect DNA partition.
Proc.Natl.Acad.Sci.USA, 107, 2010
4GFK
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BU of 4gfk by Molmil
structures of NO factors
Descriptor: Nucleoid occlusion factor SlmA
Authors:Schumacher, M.A.
Deposit date:2012-08-03
Release date:2013-06-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:SlmA forms a higher-order structure on DNA that inhibits cytokinetic Z-ring formation over the nucleoid.
Proc.Natl.Acad.Sci.USA, 110, 2013
4W4G
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BU of 4w4g by Molmil
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Schureck, M.A, Maehigashi, T, Dunkle, J.A, Dunham, C.M.
Deposit date:2014-08-14
Release date:2015-10-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
2G66
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BU of 2g66 by Molmil
Crystal structure of a collagen-like peptide with 3(S)Hyp in the Xaa position
Descriptor: collagen
Authors:Schumacher, M.A, Mizuno, K, Bachinger, H.P.
Deposit date:2006-02-24
Release date:2006-08-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Crystal Structure of a Collagen-like Polypeptide with 3(S)-Hydroxyproline Residues in the Xaa Position Forms a Standard 7/2 Collagen Triple Helix
J.Biol.Chem., 281, 2006
2GIA
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BU of 2gia by Molmil
Crystal structures of trypanosoma bruciei MRP1/MRP2
Descriptor: ACETIC ACID, mitochondrial RNA-binding protein 1, mitochondrial RNA-binding protein 2
Authors:Schumacher, M.A, Karamooz, E, Zikova, A, Trantirek, L, Lukes, J.
Deposit date:2006-03-28
Release date:2006-09-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal Structures of T. brucei MRP1/MRP2 Guide-RNA Binding Complex Reveal RNA Matchmaking Mechanism.
Cell(Cambridge,Mass.), 126, 2006
9BE2
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BU of 9be2 by Molmil
Structure of the E. coli nucleic associated protein, YejK
Descriptor: Nucleoid-associated protein YejK
Authors:Schumacher, M.A.
Deposit date:2024-04-13
Release date:2024-05-15
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3.56 Å)
Cite:Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.
Nucleic Acids Res., 2024
3BTI
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BU of 3bti by Molmil
crystal structure of QacR(E58Q) bound to berberine
Descriptor: BERBERINE, HTH-type transcriptional regulator qacR, SULFATE ION
Authors:Schumacher, M.A, Schuman, J.T, Brennan, R.G.
Deposit date:2007-12-28
Release date:2008-08-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization
Biochemistry, 47, 2008
3BTC
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BU of 3btc by Molmil
crystal structure of QacR(E57Q) bound to malachite green
Descriptor: HTH-type transcriptional regulator qacR, MALACHITE GREEN, SULFATE ION
Authors:Schumacher, M.A, Schuman, J.T, Brennan, R.G.
Deposit date:2007-12-28
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization
Biochemistry, 47, 2008
3BTJ
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BU of 3btj by Molmil
crystal structure of QacR(E58Q) bound to dequalinium
Descriptor: DEQUALINIUM, HTH-type transcriptional regulator qacR, SULFATE ION
Authors:Schumacher, M.A, Schuman, J.T, Brennan, R.G.
Deposit date:2007-12-28
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization
Biochemistry, 47, 2008
3BTL
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BU of 3btl by Molmil
crystal structure of QacR(E58Q) bound to malachite green
Descriptor: HTH-type transcriptional regulator qacR, MALACHITE GREEN, SULFATE ION
Authors:Schumacher, M.A, Schuman, J.T, Brennan, R.G.
Deposit date:2007-12-28
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization
Biochemistry, 47, 2008
6PFJ
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BU of 6pfj by Molmil
Structure of S. venezuelae RsiG-WhiG-(ci-di-GMP) complex, P64 crystal form
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), AmfC protein, RNA polymerase sigma factor
Authors:Schumacher, M.A.
Deposit date:2019-06-21
Release date:2019-11-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:c-di-GMP Arms an Anti-sigma to Control Progression of Multicellular Differentiation in Streptomyces.
Mol.Cell, 77, 2020
6PFV
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BU of 6pfv by Molmil
Structure of S. venezuelae RisG-WhiG-c-di-GMP complex: orthorhombic crystal form
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), AmfC protein, RNA polymerase sigma factor
Authors:Schumacher, M.A.
Deposit date:2019-06-22
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:c-di-GMP Arms an Anti-sigma to Control Progression of Multicellular Differentiation in Streptomyces.
Mol.Cell, 77, 2020
8SVD
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BU of 8svd by Molmil
Structure of M. baixiangningiae DarR-DNA complex reveals novel dimer-of-dimers DNA binding
Descriptor: DNA (5'-D(P*TP*AP*GP*AP*TP*AP*CP*TP*CP*CP*GP*GP*AP*GP*TP*AP*TP*CP*TP*A)-3'), DarR
Authors:Schumacher, M.A.
Deposit date:2023-05-16
Release date:2023-11-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:Structures of the DarR transcription regulator reveal unique modes of second messenger and DNA binding.
Nat Commun, 14, 2023
6UEO
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BU of 6ueo by Molmil
Structure of A. thaliana TBP-AC mismatch DNA site
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*CP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TATA-box-binding protein 1
Authors:Schumacher, M.A.
Deposit date:2019-09-22
Release date:2020-09-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature, 587, 2020

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PDB entries from 2024-07-03

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