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PDB: 195 results

6T3L
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PAS-GAF fragment from Deinococcus radiodurans phytochrome in dark state
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Claesson, E, Takala, H, Yuan Wahlgren, W, Pandey, S, Schmidt, M, Westenhoff, S.
Deposit date:2019-10-11
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser.
Elife, 9, 2020
6T3U
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PAS-GAF fragment from Deinococcus radiodurans phytochrome 1ps after photoexcitation
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Claesson, E, Takala, H, Yuan Wahlgren, W, Pandey, S, Schmidt, M, Westenhoff, S.
Deposit date:2019-10-11
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser.
Elife, 9, 2020
6B68
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Beta-Lactamase, 100ms timepoint, mixed, shards crystal form
Descriptor: (2R)-2-[(1S)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-hydroxyethyl]-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, Beta-lactamase, Ceftriaxone, ...
Authors:Pandey, S, Schmidt, M.
Deposit date:2017-10-01
Release date:2018-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography.
BMC Biol., 16, 2018
6B69
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Beta-Lactamase, 500ms timepoint, mixed, shards crystal form
Descriptor: (2R)-2-[(1S)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-hydroxyethyl]-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, (2R)-2-[(S)-{[(2E)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}(carboxy)methyl]-5-(hydroxymethyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, Beta-lactamase, ...
Authors:Pandey, S, Schmidt, M.
Deposit date:2017-10-01
Release date:2018-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography.
BMC Biol., 16, 2018
6B6D
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BU of 6b6d by Molmil
Beta-Lactamase, mixed with Ceftriaxone, needles crystal form, 100ms
Descriptor: (2R)-2-[(1S)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-hydroxyethyl]-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, Beta-lactamase, Ceftriaxone
Authors:Pandey, S, Schmidt, M.
Deposit date:2017-10-01
Release date:2018-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography.
BMC Biol., 16, 2018
6PU2
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Dark, Mutant H275T , 100K, PCM Myxobacterial Phytochrome, P2
Descriptor: 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, Photoreceptor-histidine kinase BphP
Authors:Pandey, S, Schmidt, M, Stojkovic, E.A.
Deposit date:2019-07-16
Release date:2019-10-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
Struct Dyn., 6, 2019
6PTQ
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Dark, Room Temperature, PCM Myxobacterial Phytochrome, P2, Wild Type
Descriptor: 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, BENZAMIDINE, Photoreceptor-histidine kinase BphP
Authors:Pandey, S, Schmidt, M, Stojkovic, E.A.
Deposit date:2019-07-16
Release date:2019-10-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
Struct Dyn., 6, 2019
6PTX
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Dark, 100K, PCM Myxobacterial Phytochrome, P2, Wild Type,
Descriptor: 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, Photoreceptor-histidine kinase BphP
Authors:Pandey, S, Schmidt, M, Stojkovic, E.A.
Deposit date:2019-07-16
Release date:2019-10-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
Struct Dyn., 6, 2019
1MD8
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BU of 1md8 by Molmil
Monomeric structure of the active catalytic domain of complement protease C1r
Descriptor: C1R COMPLEMENT SERINE PROTEASE
Authors:Budayova-Spano, M, Grabarse, W, Thielens, N.M, Hillen, H, Lacroix, M, Schmidt, M, Fontecilla-Camps, J, Arlaud, G.J, Gaboriaud, C.
Deposit date:2002-08-07
Release date:2003-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Monomeric structures of the zymogen and active catalytic domain of complement protease c1r: further insights into the c1 activation mechanism
Structure, 10, 2002
4B52
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BU of 4b52 by Molmil
Crystal structure of Gentlyase, the neutral metalloprotease of Paenibacillus polymyxa
Descriptor: BACILLOLYSIN, CALCIUM ION, N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN, ...
Authors:Ruf, A, Stihle, M, Benz, J, Schmidt, M, Sobek, H.
Deposit date:2012-08-02
Release date:2013-01-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structure of Gentlyase, the Neutral Metalloprotease of Paenibacillus Polymyxa
Acta Crystallogr.,Sect.D, 69, 2013
2BLI
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BU of 2bli by Molmil
L29W Mb deoxy
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nienhaus, K, Ostermann, A, Nienhaus, G.U, Parak, F.G, Schmidt, M.
Deposit date:2005-03-04
Release date:2005-04-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Ligand Migration and Protein Fluctuations in Myoglobin Mutant L29W
Biochemistry, 44, 2005
7ZKY
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BU of 7zky by Molmil
Amyloid fibril from human systemic AA amyloidosis (vascular variant)
Descriptor: Amyloid protein A
Authors:Banerjee, S, Schmidt, M, Faendrich, M.
Deposit date:2022-04-13
Release date:2022-12-07
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Amyloid fibril structure from the vascular variant of systemic AA amyloidosis.
Nat Commun, 13, 2022
2BLJ
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BU of 2blj by Molmil
Structure of L29W MbCO
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nienhaus, K, Ostermann, A, Nienhaus, G.U, Parak, F.G, Schmidt, M.
Deposit date:2005-03-04
Release date:2005-04-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ligand Migration and Protein Fluctuations in Myoglobin Mutant L29W
Biochemistry, 44, 2005
2BLH
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BU of 2blh by Molmil
Ligand Migration and Protein Fluctuations in Myoglobin Mutant L29W
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nienhaus, K, Ostermann, A, Nienhaus, G.U, Parak, F.G, Schmidt, M.
Deposit date:2005-03-04
Release date:2005-04-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Ligand Migration and Protein Fluctuations in Myoglobin Mutant L29W
Biochemistry, 44, 2005
6XLQ
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BU of 6xlq by Molmil
Crystal Structure of the Human BTN3A1 Ectodomain in Complex with the CTX-2026 Fab
Descriptor: Butyrophilin subfamily 3 member A1, CTX-2026 Heavy Chain, CTX-2026 Light Chain
Authors:Payne, K.K, Mine, J.A, Biswas, S, Chaurio, R.A, Perales-Puchalt, A, Anadon, C.M, Costich, T.L, Harro, C.M, Walrath, J, Ming, Q, Tcyganov, E, Buras, A.L, Rigolizzo, K.E, Mandal, G, Lajoie, J, Ophir, M, Tchou, J, Marchion, D, Luca, V.C, Bobrowicz, P, McLaughlin, B, Eskiocak, U, Schmidt, M, Cubillos-Ruiz, J.R, Rodriguez, P.C, Gabrilovich, D.I, Conejo-Garcia, J.R.
Deposit date:2020-06-29
Release date:2020-09-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:BTN3A1 governs antitumor responses by coordinating alpha beta and gamma delta T cells.
Science, 369, 2020
7OVT
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BU of 7ovt by Molmil
major seeded in vitro fibril morphology from murine SAA1.1 protein
Descriptor: Serum amyloid A-2 protein
Authors:Heerde, T, Schmidt, M, Faendrich, M.
Deposit date:2021-06-15
Release date:2022-02-02
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Cryo-EM demonstrates the in vitro proliferation of an ex vivo amyloid fibril morphology by seeding.
Nat Commun, 13, 2022
3ZRS
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BU of 3zrs by Molmil
X-ray crystal structure of a KirBac potassium channel highlights a mechanism of channel opening at the bundle-crossing gate.
Descriptor: ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL 10, CHLORIDE ION, POTASSIUM ION
Authors:Bavro, V.N, De Zorzi, R, Schmidt, M.R, Muniz, J.R.C, Zubcevic, L, Sansom, M.S.P, Venien-Bryan, C, Tucker, S.J.
Deposit date:2011-06-17
Release date:2012-01-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structure of a Kirbac Potassium Channel with an Open Bundle Crossing Indicates a Mechanism of Channel Gating
Nat.Struct.Mol.Biol., 19, 2012
6ZCG
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BU of 6zcg by Molmil
Amyloid fibril morphology ii (in vitro) from murine SAA1.1 protein
Descriptor: Serum amyloid A-2 protein
Authors:Bansal, A, Schmidt, M, Fandrich, M.
Deposit date:2020-06-11
Release date:2021-02-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:AA amyloid fibrils from diseased tissue are structurally different from in vitro formed SAA fibrils.
Nat Commun, 12, 2021
6ZCH
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BU of 6zch by Molmil
Amyloid fibril morphology II (ex vivo) from murine SAA1.1 protein.
Descriptor: Serum amyloid A-2 protein
Authors:Bansal, A, Schmidt, M, Faendrich, M.
Deposit date:2020-06-11
Release date:2021-02-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:AA amyloid fibrils from diseased tissue are structurally different from in vitro formed SAA fibrils.
Nat Commun, 12, 2021
8B3A
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BU of 8b3a by Molmil
catalytic amyloid fibril formed by Ac-LHLHLRL-amide
Descriptor: ACE-LEU-HIS-LEU-HIS-LEU-ARG-LEU-NH2
Authors:Heerde, T, Schmidt, M, Faendrich, M.
Deposit date:2022-09-16
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structure of a catalytic amyloid fibril.
Sci Rep, 13, 2023
4LP8
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BU of 4lp8 by Molmil
A Novel Open-State Crystal Structure of the Prokaryotic Inward Rectifier KirBac3.1
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Inward rectifier potassium channel Kirbac3.1, ...
Authors:Zubcevic, L, Bavro, V.N, Muniz, J.R.C, Schmidt, M.R, Wang, S, De Zorzi, R, Venien-Bryan, C, Sansom, M.S.P, Nichols, C.G, Tucker, S.J.
Deposit date:2013-07-15
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Control of KirBac3.1 Potassium Channel Gating at the Interface between Cytoplasmic Domains.
J.Biol.Chem., 289, 2014
6ZCF
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BU of 6zcf by Molmil
Amyloid fibril morphology i (in vitro) from murine SAA1.1 protein
Descriptor: Serum amyloid A-2 protein
Authors:Bansal, A, Schmidt, M, Faendrich, M.
Deposit date:2020-06-11
Release date:2021-02-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:AA amyloid fibrils from diseased tissue are structurally different from in vitro formed SAA fibrils.
Nat Commun, 12, 2021
7ZJ2
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Amyloid fibril (in vitro) from full-length hnRNPA1 protein
Descriptor: Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1
Authors:Sharma, K, Banerjee, S, Schmidt, M, Faendrich, M.
Deposit date:2022-04-08
Release date:2023-08-02
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Cryo-EM Structure of the Full-length hnRNPA1 Amyloid Fibril.
J.Mol.Biol., 435, 2023
4FBM
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BU of 4fbm by Molmil
LipS and LipT, two metagenome-derived lipolytic enzymes increase the diversity of known lipase and esterase families
Descriptor: BROMIDE ION, LipS lipolytic enzyme
Authors:Chow, J, Krauss, U, Dall Antonia, Y, Fersini, F, Schmeisser, C, Schmidt, M, Menyes, I, Bornscheuer, U, Lauinger, B, Bongen, P, Pietruszka, J, Eckstein, M, Thum, O, Liese, A, Mueller-Dieckmann, J, Jaeger, K.-E, Kovavic, F, Streit, W.R, Structural Proteomics in Europe (SPINE)
Deposit date:2012-05-23
Release date:2012-10-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Metagenome-Derived Enzymes LipS and LipT Increase the Diversity of Known Lipases.
Plos One, 7, 2012
8OQ4
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AApoAII amyloid fibril Morphology II (ex vivo)
Descriptor: Apolipoprotein A-II
Authors:Andreotti, G, Schmidt, M, Faendrich, M.
Deposit date:2023-04-11
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Insights into the Structural Basis of Amyloid Resistance Provided by Cryo-EM Structures of AApoAII Amyloid Fibrils.
J.Mol.Biol., 436, 2024

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PDB entries from 2024-08-21

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