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PDB: 170 results

5UK0
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CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ...
Authors:Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N.
Deposit date:2017-01-19
Release date:2017-05-31
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface.
J. Mol. Biol., 429, 2017
5UK1
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CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ...
Authors:Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N.
Deposit date:2017-01-19
Release date:2017-05-31
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface.
J. Mol. Biol., 429, 2017
2LMB
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Solution Structure of C-terminal RAGE (ctRAGE)
Descriptor: Advanced glycosylation end product-specific receptor
Authors:Rai, V, Maldonado, A.Y, Burz, D.S, Reverdatto, S, Schmidt, A, Shekhtman, A.
Deposit date:2011-11-29
Release date:2011-12-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Signal transduction in receptor for advanced glycation end products (RAGE): solution structure of C-terminal rage (ctRAGE) and its binding to mDia1.
J.Biol.Chem., 287, 2012
4J24
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BU of 4j24 by Molmil
Estrogen Receptor in complex with proline-flanked LXXLL peptides
Descriptor: 19-mer peptide, ESTRADIOL, Estrogen receptor beta
Authors:Fuchs, S, Nguyen, H.D, Phan, T, Burton, M, Nieto, L, de Vries-van Leeuwen, I, Schmidt, A, Goodarzifard, M, Agten, S, Rose, R, Ottmann, C, Milroy, L.G, Brunsveld, L.
Deposit date:2013-02-04
Release date:2013-03-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Proline primed helix length as a modulator of the nuclear receptor-coactivator interaction
J.Am.Chem.Soc., 135, 2013
4J26
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Estrogen Receptor in complex with proline-flanked LXXLL peptides
Descriptor: 12-mer Peptide, ESTRADIOL, Estrogen receptor beta
Authors:Fuchs, S, Nguyen, H.D, Phan, T, Burton, M, Nieto, L, de Vries-van Leeuwen, I, Schmidt, A, Goodarzifard, M, Agten, S, Rose, R, Ottmann, C, Milroy, L.G, Brunsveld, L.
Deposit date:2013-02-04
Release date:2013-03-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Proline primed helix length as a modulator of the nuclear receptor-coactivator interaction
J.Am.Chem.Soc., 135, 2013
4IUB
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BU of 4iub by Molmil
Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its as-isolated form - oxidized state 1
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Frielingsdorf, S, Schmidt, A, Fritsch, J, Lenz, O, Scheerer, P.
Deposit date:2013-01-20
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Reversible [4Fe-3S] cluster morphing in an O2-tolerant [NiFe] hydrogenase.
Nat.Chem.Biol., 10, 2014
4IUD
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Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its as-isolated form with ascorbate - partly reduced state
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Hammer, M, Schmidt, A, Frielingsdorf, S, Fritsch, J, Lenz, O, Scheerer, P.
Deposit date:2013-01-20
Release date:2014-04-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Reversible [4Fe-3S] cluster morphing in an O2-tolerant [NiFe] hydrogenase.
Nat.Chem.Biol., 10, 2014
6G1Z
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BU of 6g1z by Molmil
Crystal structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in its Pfr state.
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, ...
Authors:Sauthof, L, Schmidt, A, Szczepek, M, Scheerer, P.
Deposit date:2018-03-22
Release date:2018-11-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural snapshot of a bacterial phytochrome in its functional intermediate state.
Nat Commun, 9, 2018
4IUC
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BU of 4iuc by Molmil
Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its as-isolated form - oxidized state 2
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Frielingsdorf, S, Schmidt, A, Fritsch, J, Lenz, O, Scheerer, P.
Deposit date:2013-01-20
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Reversible [4Fe-3S] cluster morphing in an O2-tolerant [NiFe] hydrogenase.
Nat.Chem.Biol., 10, 2014
2J6I
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BU of 2j6i by Molmil
Candida boidinii formate dehydrogenase (FDH) C-terminal mutant
Descriptor: FORMATE DEHYDROGENASE, TETRAETHYLENE GLYCOL
Authors:Schirwitz, K, Schmidt, A, Lamzin, V.S.
Deposit date:2006-09-29
Release date:2007-06-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:High-Resolution Structures of Formate Dehydrogenase from Candida Boidinii.
Protein Sci., 16, 2007
6GYH
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BU of 6gyh by Molmil
Crystal structure of the light-driven proton pump Coccomyxa subellipsoidea Rhodopsin CsR
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHOLESTEROL, Family A G protein-coupled receptor-like protein, ...
Authors:Szczepek, M, Schmidt, A, Scheerer, P.
Deposit date:2018-06-29
Release date:2019-03-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design of a light-gated proton channel based on the crystal structure ofCoccomyxarhodopsin.
Sci.Signal., 12, 2019
8AUV
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BU of 8auv by Molmil
Cryo-EM structure of the plant 40S subunit
Descriptor: 18S rRNA, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R.
Deposit date:2022-08-25
Release date:2023-06-07
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.38 Å)
Cite:Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Nat.Plants, 9, 2023
5MDL
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BU of 5mdl by Molmil
Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its O2-derivatized form by a "soak-and-freeze" derivatization method
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, FE3-S4 CLUSTER, ...
Authors:Kalms, J, Schmidt, A, Scheerer, P.
Deposit date:2016-11-11
Release date:2018-02-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Tracking the route of molecular oxygen in O2-tolerant membrane-bound [NiFe] hydrogenase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2FSS
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BU of 2fss by Molmil
Candida boidinii formate dehydrogenase (FDH) K47E mutant
Descriptor: SULFATE ION, formate dehydrogenase
Authors:Schirwitz, K, Schmidt, A, Lamzin, V.S.
Deposit date:2006-01-23
Release date:2007-02-13
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-resolution structures of formate dehydrogenase from Candida boidinii.
Protein Sci., 16, 2007
8B2L
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BU of 8b2l by Molmil
Cryo-EM structure of the plant 80S ribosome
Descriptor: 18S rRNA, 25S rRNA, 30S ribosomal protein S15, ...
Authors:Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R.
Deposit date:2022-09-14
Release date:2023-08-23
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Nat.Plants, 9, 2023
5FLX
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BU of 5flx by Molmil
Mammalian 40S HCV-IRES complex
Descriptor: 18S RRNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ...
Authors:Yamamoto, H, Collier, M, Loerke, J, Ismer, J, Schmidt, A, Hilal, T, Sprink, T, Yamamoto, K, Mielke, T, Burger, J, Shaikh, T.R, Dabrowski, M, Hildebrand, P.W, Scheerer, P, Spahn, C.M.T.
Deposit date:2015-10-28
Release date:2015-12-23
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA.
Embo J., 34, 2015
8AZW
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BU of 8azw by Molmil
Cryo-EM structure of the plant 60S subunit
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R.
Deposit date:2022-09-06
Release date:2023-06-07
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.14 Å)
Cite:Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Nat.Plants, 9, 2023
2FIR
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BU of 2fir by Molmil
Crystal structure of DFPR-VIIa/sTF
Descriptor: CALCIUM ION, CHLORIDE ION, Coagulation factor VII Heavy Chain (EC 3.4.21.21), ...
Authors:Bajaj, S.P, Schmidt, A.E, Padmanabhan, K, Bajaj, M.S, Prevost, D, Schreuder, H.
Deposit date:2005-12-30
Release date:2006-07-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:High Resolution Structures of p-Aminobenzamidine- and Benzamidine-VIIa/Soluble Tissue Factor: Unpredicted conformation of the 192-193 peptide bond and mapping of Ca2+, Mg2+, Na+ and Zn2+ sites in factor VIIa
J.Biol.Chem., 281, 2006
7JIX
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BU of 7jix by Molmil
Murine antibody that engages the influenza hemagglutinin receptor binding site
Descriptor: Fab heavy chain, Fab light chain, Hemagglutinin HA1 chain, ...
Authors:Bajic, G, Schmidt, A.G.
Deposit date:2020-07-23
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.901 Å)
Cite:Murine antibody that engages the influenza hemagglutinin receptor binding site
To Be Published
8POW
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BU of 8pow by Molmil
Crystal Structure of the C19G variant of the membrane-bound [NiFe]-Hydrogenase from Cupriavidus necator in the air-oxidized state at 1.61 A Resolution.
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, Fe4S4, ...
Authors:Kalms, J, Schmidt, A, Scheerer, P.
Deposit date:2023-07-05
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Stepwise conversion of the Cys 6 [4Fe-3S] to a Cys 4 [4Fe-4S] cluster and its impact on the oxygen tolerance of [NiFe]-hydrogenase.
Chem Sci, 14, 2023
8POX
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BU of 8pox by Molmil
Crystal Structure of the C19G variant of the membrane-bound [NiFe]-Hydrogenase from Cupriavidus necator in the H2-reduced state at 1.6 A Resolution.
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, Fe4S4, ...
Authors:Kalms, J, Schmidt, A, Scheerer, P.
Deposit date:2023-07-05
Release date:2024-09-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Stepwise conversion of the Cys 6 [4Fe-3S] to a Cys 4 [4Fe-4S] cluster and its impact on the oxygen tolerance of [NiFe]-hydrogenase.
Chem Sci, 14, 2023
1BWW
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BU of 1bww by Molmil
BENCE-JONES IMMUNOGLOBULIN REI VARIABLE PORTION, T39K MUTANT
Descriptor: PROTEIN (IG KAPPA CHAIN V-I REGION REI)
Authors:Uson, I, Pohl, E, Schneider, T.R, Dauter, Z, Schmidt, A, Fritz, H.J, Sheldrick, G.M.
Deposit date:1998-09-29
Release date:1998-10-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:1.7 A structure of the stabilized REIv mutant T39K. Application of local NCS restraints.
Acta Crystallogr.,Sect.D, 55, 1999
1QDB
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BU of 1qdb by Molmil
CYTOCHROME C NITRITE REDUCTASE
Descriptor: CALCIUM ION, CYTOCHROME C NITRITE REDUCTASE, HEME C, ...
Authors:Einsle, O, Messerschmidt, A, Stach, P, Huber, R, Kroneck, P.M.H.
Deposit date:1999-05-19
Release date:1999-08-18
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of cytochrome c nitrite reductase.
Nature, 400, 1999
2UX7
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Pseudoazurin with engineered amicyanin ligand loop, reduced form, pH 7.5
Descriptor: CHLORIDE ION, COPPER (II) ION, GLYCEROL, ...
Authors:Velarde, M, Huber, R, Yanagisawa, S, Dennison, C, Messerschmidt, A.
Deposit date:2007-03-27
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Influence of loop shortening on the metal binding site of cupredoxin pseudoazurin.
Biochemistry, 46, 2007
2UX6
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Pseudoazurin with engineered amicyanin ligand loop, oxidized form, pH 7.5
Descriptor: CHLORIDE ION, COPPER (II) ION, GLYCEROL, ...
Authors:Velarde, M, Huber, R, Yanagisawa, S, Dennison, C, Messerschmidt, A.
Deposit date:2007-03-27
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Influence of Loop Shortening on the Metal Binding Site of Cupredoxin Pseudoazurin.
Biochemistry, 46, 2007

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