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PDB: 112 results

4R1F
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BU of 4r1f by Molmil
Re-refined Human DNA topoisomerase IIa (ATPase and transducer domains) in complex with ADP and SO4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-alpha, GLYCEROL, ...
Authors:Stanger, F.V, Schirmer, T.
Deposit date:2014-08-05
Release date:2014-09-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure of the N-Terminal Gyrase B Fragment in Complex with ADPPi Reveals Rigid-Body Motion Induced by ATP Hydrolysis
Plos One, 9, 2014
6GS8
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BU of 6gs8 by Molmil
Crystal structure of SmbA in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, Uncharacterized protein
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2018-06-13
Release date:2019-07-31
Last modified:2022-07-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Reciprocal growth control by competitive binding of nucleotide second messengers to a metabolic switch in Caulobacter crescentus
Nat Microbiol, 2021
6GTM
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BU of 6gtm by Molmil
Crystal structure of SmbA in complex with ppGpp.
Descriptor: GUANOSINE-5',3'-TETRAPHOSPHATE, SmbA
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2018-06-18
Release date:2019-07-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Reciprocal growth control by competitive binding of nucleotide second messengers to a metabolic switch in Caulobacter crescentus
Nat Microbiol, 2021
7B0E
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BU of 7b0e by Molmil
Crystal structure of SmbA loop deletion mutant
Descriptor: 1,2-ETHANEDIOL, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CALCIUM ION, ...
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2020-11-19
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:High-resolution crystal structure of loop deletion mutant SmbA bound to a monomeric c-di-GMP
To Be Published
1AF6
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BU of 1af6 by Molmil
MALTOPORIN SUCROSE COMPLEX
Descriptor: MAGNESIUM ION, MALTOPORIN, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Dutzler, R, Schirmer, T.
Deposit date:1997-03-21
Release date:1998-03-25
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Channel specificity: structural basis for sugar discrimination and differential flux rates in maltoporin.
J.Mol.Biol., 272, 1997
2OAT
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BU of 2oat by Molmil
ORNITHINE AMINOTRANSFERASE COMPLEXED WITH 5-FLUOROMETHYLORNITHINE
Descriptor: 1-AMINO-7-(2-METHYL-3-OXIDO-5-((PHOSPHONOXY)METHYL)-4-PYRIDOXAL-5-OXO-6-HEPTENATE, ORNITHINE AMINOTRANSFERASE
Authors:Storici, P, Schirmer, T.
Deposit date:1998-05-07
Release date:1998-12-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of human ornithine aminotransferase complexed with the highly specific and potent inhibitor 5-fluoromethylornithine.
J.Mol.Biol., 285, 1999
5IDM
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BU of 5idm by Molmil
Bifunctional histidine kinase CckA (domain, CA) in complex with c-di-GMP and AMPPNP/Mg2+
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Cell cycle histidine kinase CckA, MAGNESIUM ION, ...
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2016-02-24
Release date:2016-10-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cyclic di-GMP mediates a histidine kinase/phosphatase switch by noncovalent domain cross-linking.
Sci Adv, 2, 2016
1BT9
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BU of 1bt9 by Molmil
OMPF PORIN MUTANT D74A
Descriptor: PROTEIN (MATRIX PORIN OUTER MEMBRANE PROTEIN F)
Authors:Philippsen, A, Schirmer, T.
Deposit date:1998-09-01
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Stability of trimeric OmpF porin: the contributions of the latching loop L2.
Biochemistry, 37, 1998
4LJ3
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BU of 4lj3 by Molmil
Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with substrate c-di-GMP and Ca++
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CALCIUM ION, Cyclic di-GMP phosphodiesterase YahA, ...
Authors:Sundriyal, A, Schirmer, T.
Deposit date:2013-07-04
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Inherent Regulation of EAL Domain-catalyzed Hydrolysis of Second Messenger Cyclic di-GMP.
J.Biol.Chem., 289, 2014
4LYK
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BU of 4lyk by Molmil
Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with activating cofactor Mg++
Descriptor: 1,2-ETHANEDIOL, Cyclic di-GMP phosphodiesterase YahA, MAGNESIUM ION, ...
Authors:Sundriyal, A, Schirmer, T.
Deposit date:2013-07-31
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Inherent Regulation of EAL Domain-catalyzed Hydrolysis of Second Messenger Cyclic di-GMP.
J.Biol.Chem., 289, 2014
5JFF
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BU of 5jff by Molmil
E. coli EcFicT mutant G55R in complex with EcFicA
Descriptor: CHLORIDE ION, Probable adenosine monophosphate-protein transferase fic, TRIS-HYDROXYMETHYL-METHYL-AMMONIUM, ...
Authors:Stanger, F.V, Schirmer, T.
Deposit date:2016-04-19
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Escherichia coli Fic Toxin-Like Protein in Complex with Its Cognate Antitoxin.
Plos One, 11, 2016
5JFZ
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BU of 5jfz by Molmil
E. coli EcFicT in complex with EcFicA mutant E28G
Descriptor: Probable adenosine monophosphate-protein transferase fic, Uncharacterized protein YhfG
Authors:Stanger, F.V, Schirmer, T.
Deposit date:2016-04-19
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of the Escherichia coli Fic Toxin-Like Protein in Complex with Its Cognate Antitoxin.
Plos One, 11, 2016
6SFT
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BU of 6sft by Molmil
Solution structure of protein ARR_CleD in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Two-component receiver protein CleD
Authors:Habazettl, J, Hee, C.S, Jenal, U, Schirmer, T, Grzesiek, S.
Deposit date:2019-08-02
Release date:2020-06-10
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Intercepting second-messenger signaling by rationally designed peptides sequestering c-di-GMP.
Proc.Natl.Acad.Sci.USA, 117, 2020
6PFK
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BU of 6pfk by Molmil
PHOSPHOFRUCTOKINASE, INHIBITED T-STATE
Descriptor: 2-PHOSPHOGLYCOLIC ACID, PHOSPHOFRUCTOKINASE
Authors:Evans, P.R, Schirmer, T, Auer, M.
Deposit date:1996-01-04
Release date:1996-07-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of the allosteric behaviour of phosphofructokinase.
Nature, 343, 1990
6TTR
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BU of 6ttr by Molmil
Crystal Structure of the coiled coil and GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), GGDEF diguanylate cyclase DgcB, PHOSPHATE ION
Authors:Holzschuh, F, Schirmer, T, Teixeira, R.D.
Deposit date:2019-12-30
Release date:2021-01-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of the coiled coil and GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
To Be Published
6TTS
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BU of 6tts by Molmil
Crystal structure of the GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), GGDEF diguanylate cyclase DgcB, SULFATE ION
Authors:Holzschuh, F, Schirmer, T, Teixeira, R.
Deposit date:2019-12-30
Release date:2021-01-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
To Be Published
6QKI
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BU of 6qki by Molmil
Native structure of EgtB from Chloracidobacterium thermophilum, a type II sulfoxide synthase
Descriptor: FE (III) ION, Uncharacterized protein
Authors:Stampfli, A.R, Badri, B.N, Schirmer, T, Seebeck, F.P.
Deposit date:2019-01-29
Release date:2019-03-27
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:An Alternative Active Site Architecture for O2Activation in the Ergothioneine Biosynthetic EgtB from Chloracidobacterium thermophilum.
J.Am.Chem.Soc., 141, 2019
6QKJ
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BU of 6qkj by Molmil
EgtB from Chloracidobacterium thermophilum, a type II sulfoxide synthase in complex with N,N,N-trimethyl-histidine
Descriptor: CHLORIDE ION, FE (III) ION, IMIDAZOLE, ...
Authors:Stampfli, A.R, Badri, B.N, Schirmer, T, Seebeck, F.P.
Deposit date:2019-01-29
Release date:2019-03-27
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An Alternative Active Site Architecture for O2Activation in the Ergothioneine Biosynthetic EgtB from Chloracidobacterium thermophilum.
J.Am.Chem.Soc., 141, 2019
6QRJ
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BU of 6qrj by Molmil
Crystal structure of ShkA full-length in complex with AMPPNP
Descriptor: Hybrid kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2019-02-19
Release date:2020-01-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Hybrid histidine kinase activation by cyclic di-GMP-mediated domain liberation.
Proc.Natl.Acad.Sci.USA, 117, 2020
6QRL
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BU of 6qrl by Molmil
Crystal structure of ShkA _Rec1 in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Hybrid kinase, SULFATE ION
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2019-02-19
Release date:2020-01-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Hybrid histidine kinase activation by cyclic di-GMP-mediated domain liberation.
Proc.Natl.Acad.Sci.USA, 117, 2020
4XJY
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BU of 4xjy by Molmil
Periplasmic repressor protein YfiR
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, L(+)-TARTARIC ACID, YfiR
Authors:Kauer, S, Schirmer, T.
Deposit date:2015-01-09
Release date:2016-01-20
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Periplasmic repressor protein YfiR at 1.8 Angstroms resolution
To Be Published
1W25
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BU of 1w25 by Molmil
Response regulator PleD in complex with c-diGMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, STALKED-CELL DIFFERENTIATION CONTROLLING PROTEIN, ...
Authors:Chan, C, Schirmer, T, Jenal, U.
Deposit date:2004-06-28
Release date:2004-11-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis of Activity and Allosteric Control of Diguanylate Cyclase
Proc.Natl.Acad.Sci.USA, 101, 2004
2J88
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BU of 2j88 by Molmil
Hyaluronidase in complex with a monoclonal IgG Fab fragment
Descriptor: FAB, HYALURONONGLUCOSAMINIDASE
Authors:Padavattan, S, Schirmer, T, Markovic-Housley, Z.
Deposit date:2006-10-23
Release date:2007-04-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Identification of a B-Cell Epitope of Hyaluronidase, a Major Bee Venom Allergen, from its Crystal Structure in Complex with a Specific Fab.
J.Mol.Biol., 368, 2007
2J1N
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BU of 2j1n by Molmil
osmoporin OmpC
Descriptor: CHLORIDE ION, DODECANE, MAGNESIUM ION, ...
Authors:Basle, A, Storici, P, Rummel, G, Rosenbusch, J.P, Schirmer, T.
Deposit date:2006-08-15
Release date:2006-09-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Osmoporin Ompc from E. Coli at 2.0 A.
J.Mol.Biol., 362, 2006
2JK8
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BU of 2jk8 by Molmil
Type IV secretion system effector protein BepA complexed with a pyrophosphate moiety
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Palanivelu, D.V, Schirmer, T.
Deposit date:2008-08-22
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Fic Domain Catalyzed Adenylylation: Insight Provided by the Structural Analysis of the Type Iv Secretion System Effector Bepa.
Protein Sci., 20, 2011

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